TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0111b.7
         (402 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG586326 similar to PIR|G84493|G8 probable retroelement pol poly...   162  2e-40
CA860311 weakly similar to GP|7289872|gb|A CG17427 gene product ...    41  7e-04
AJ497987 weakly similar to GP|9927273|dbj Similar to Arabidopsis...    35  0.067

>BG586326 similar to PIR|G84493|G8 probable retroelement pol polyprotein
           [imported] - Arabidopsis thaliana, partial (13%)
          Length = 736

 Score =  162 bits (410), Expect = 2e-40
 Identities = 79/136 (58%), Positives = 100/136 (73%)
 Frame = +2

Query: 48  TAAPVLTLPLEKEPYEVYCNAS*QGLGCVLMQHREAMAYASSQLKLHERNYLTHDLELAV 107
           T+AP+L LP E   Y VY +AS  GLGCVL QH + +AYAS QL+ HE NY THDLE+A 
Sbjct: 8   TSAPILVLP-ELITYVVYTDASITGLGCVLTQHEKVIAYASRQLRKHEGNYPTHDLEMAA 184

Query: 108 VVFALKIWRHYLYGSTFTVFSNHKGLKYLFD*KDLNMGQRCWMNFIEDYDFTLLYHPGKA 167
           VVFALKIWR YLYG+   + ++HK LKY+F   +LN+ QR WM F+ DYD  + Y+PGKA
Sbjct: 185 VVFALKIWRSYLYGAKVQIHTDHKSLKYIFTQPELNLRQRRWMEFVADYDLDITYYPGKA 364

Query: 168 NVVADALSHQAIHVSS 183
           N+VADALS + + VS+
Sbjct: 365 NLVADALSRRRVDVSA 412


>CA860311 weakly similar to GP|7289872|gb|A CG17427 gene product {Drosophila
           melanogaster}, partial (20%)
          Length = 192

 Score = 41.2 bits (95), Expect = 7e-04
 Identities = 22/58 (37%), Positives = 31/58 (52%), Gaps = 5/58 (8%)
 Frame = +1

Query: 72  GLGCVLMQ-----HREAMAYASSQLKLHERNYLTHDLELAVVVFALKIWRHYLYGSTF 124
           G+G  L Q     H   +AYAS  L   ERNY   + E    ++A++ +RHYL+G  F
Sbjct: 13  GIGAGLSQKDEENHEHPIAYASRLLTAAERNYTVVERECLAAIWAIRNFRHYLHGPKF 186


>AJ497987 weakly similar to GP|9927273|dbj Similar to Arabidopsis thaliana
           chromosome II BAC F26H6; putative retroelement pol
           polyprotein, partial (1%)
          Length = 636

 Score = 34.7 bits (78), Expect = 0.067
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = -2

Query: 108 VVFALKIWRHYLYGSTFTVFSNHKGLKYLFD*KDLNMGQRCWMNFIEDYDFTLLYHPG-K 166
           + +A K  RHY+   T  + S    +KY+F+   L      W   + +YD         K
Sbjct: 620 LAWAAKRLRHYMINHTTWLVSKMDPIKYIFEKPALTGRIARWQMLLSEYDIEYRSQKAIK 441

Query: 167 ANVVADALSHQAI 179
            +++AD L+HQ +
Sbjct: 440 GSILADHLAHQPL 402


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.353    0.155    0.544 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,095,238
Number of Sequences: 36976
Number of extensions: 181435
Number of successful extensions: 1921
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1404
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 502
Number of HSP's gapped (non-prelim): 1488
length of query: 402
length of database: 9,014,727
effective HSP length: 98
effective length of query: 304
effective length of database: 5,391,079
effective search space: 1638888016
effective search space used: 1638888016
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.5 bits)
S2: 59 (27.3 bits)