BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0111a.4
(74 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC82306 similar to GP|22135994|gb|AAM91579.1 unknown protein {Ar... 149 2e-37
TC91603 similar to GP|22135994|gb|AAM91579.1 unknown protein {Ar... 143 1e-35
CA858622 homologue to GP|14488078|gb At1g05170/YUP8H12_22 {Arabi... 46 2e-06
CA990983 similar to GP|22202663|dbj putative elicitor response p... 44 9e-06
TC90710 similar to GP|14488078|gb|AAK63859.1 At1g05170/YUP8H12_2... 44 1e-05
TC86405 similar to GP|4138265|emb|CAA06925.1 Avr9 elicitor respo... 39 3e-04
TC93712 similar to GP|15292683|gb|AAK92710.1 unknown protein {Ar... 28 0.86
TC86531 27 1.5
TC79286 similar to GP|18481716|gb|AAL73538.1 putative T7N9 14 pr... 26 3.3
TC89274 similar to GP|14211574|dbj|BAB56105. Na H-antiportor {Pe... 26 3.3
CB894202 weakly similar to GP|23428550|gb Serine/threonine Kinas... 25 4.3
TC84387 homologue to GP|15217309|gb|AAK92653.1 Hypothetical prot... 25 4.3
TC81022 similar to PIR|T52556|T52556 beta-amylase (EC 3.2.1.2) p... 25 4.3
CA916894 similar to PIR|A96790|A96 protein T23E18.18 [imported] ... 25 4.3
TC89333 homologue to PIR|T01855|T01855 probable chaperonin-conta... 25 5.6
BG454744 similar to PIR|S62667|S62 Nramp1 protein - rice, partia... 25 5.6
BF641078 similar to GP|14423556|gb putative protein {Arabidopsis... 25 5.6
BE320311 similar to PIR|G84781|G847 hypothetical protein At2g365... 25 5.6
BQ139600 similar to PIR|B84681|B846 hypothetical protein At2g281... 25 7.3
BQ750853 similar to GP|13562018|gb fibroin 3 {Plectreurys tristi... 25 7.3
>TC82306 similar to GP|22135994|gb|AAM91579.1 unknown protein {Arabidopsis
thaliana}, partial (66%)
Length = 1203
Score = 149 bits (376), Expect = 2e-37
Identities = 68/74 (91%), Positives = 70/74 (93%)
Frame = +3
Query: 1 FRMFSNEDVTIGAWMLAMNVNHENNHELCAPECTSTSIAVWDIPKCSGLCNPEKRMLELH 60
FRMFSNEDVTIGAWMLAMNVNHEN HELC+PECTSTSIA WDIPKCSGLCNPEKRMLELH
Sbjct: 780 FRMFSNEDVTIGAWMLAMNVNHENIHELCSPECTSTSIAGWDIPKCSGLCNPEKRMLELH 959
Query: 61 QMESCTQSPTAESD 74
QM+SC QSPT ESD
Sbjct: 960 QMDSCIQSPTMESD 1001
>TC91603 similar to GP|22135994|gb|AAM91579.1 unknown protein {Arabidopsis
thaliana}, partial (31%)
Length = 748
Score = 143 bits (360), Expect = 1e-35
Identities = 65/74 (87%), Positives = 69/74 (92%)
Frame = +2
Query: 1 FRMFSNEDVTIGAWMLAMNVNHENNHELCAPECTSTSIAVWDIPKCSGLCNPEKRMLELH 60
FRMFSNEDVTIGAWMLAMNV HENN ELCA +CT+TSIAVWDIPKCSGLCNPEK+MLELH
Sbjct: 137 FRMFSNEDVTIGAWMLAMNVKHENNLELCASDCTATSIAVWDIPKCSGLCNPEKKMLELH 316
Query: 61 QMESCTQSPTAESD 74
Q ESC+QSPT ESD
Sbjct: 317 QKESCSQSPTLESD 358
>CA858622 homologue to GP|14488078|gb At1g05170/YUP8H12_22 {Arabidopsis
thaliana}, partial (54%)
Length = 874
Score = 46.2 bits (108), Expect = 2e-06
Identities = 23/67 (34%), Positives = 39/67 (57%), Gaps = 9/67 (13%)
Frame = +2
Query: 4 FSNEDVTIGAWMLAMNVNHENNHELCA---PECT------STSIAVWDIPKCSGLCNPEK 54
++NEDV+IGAW + ++V H ++ LC P+C + +A +D CSG+C
Sbjct: 425 YANEDVSIGAWFIGLDVEHIDDRRLCCGTPPDCEWKAQAGNICVASFDW-SCSGICRSAD 601
Query: 55 RMLELHQ 61
R+ E+H+
Sbjct: 602 RIKEVHR 622
>CA990983 similar to GP|22202663|dbj putative elicitor response protein
{Oryza sativa (japonica cultivar-group)}, partial (20%)
Length = 444
Score = 44.3 bits (103), Expect = 9e-06
Identities = 23/73 (31%), Positives = 38/73 (51%), Gaps = 16/73 (21%)
Frame = +3
Query: 4 FSNEDVTIGAWMLAMNVNHENNHELCA----------PECT------STSIAVWDIPKCS 47
++NEDV++GAW+L + V H + +C +C + +A +D KCS
Sbjct: 24 YANEDVSLGAWLLGLEVEHVDERSMCCATPPGLLFFQADCEWKARSGNMCVASYDW-KCS 200
Query: 48 GLCNPEKRMLELH 60
G+C +RM E+H
Sbjct: 201GICKSVERMKEIH 239
>TC90710 similar to GP|14488078|gb|AAK63859.1 At1g05170/YUP8H12_22
{Arabidopsis thaliana}, partial (73%)
Length = 1084
Score = 43.9 bits (102), Expect = 1e-05
Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 8/66 (12%)
Frame = +1
Query: 4 FSNEDVTIGAWMLAMNVNHENNHELCA--------PECTSTSIAVWDIPKCSGLCNPEKR 55
++NEDV++GAW + ++V H ++ LC + + +A +D CSG+C +R
Sbjct: 709 YANEDVSLGAWFIGLDVEHIDDRRLCCGTTDCEWKAQAGNACVASFDW-TCSGICRSAER 885
Query: 56 MLELHQ 61
+ E+H+
Sbjct: 886 IKEVHK 903
>TC86405 similar to GP|4138265|emb|CAA06925.1 Avr9 elicitor response protein
{Nicotiana tabacum}, partial (94%)
Length = 1784
Score = 39.3 bits (90), Expect = 3e-04
Identities = 18/66 (27%), Positives = 37/66 (55%), Gaps = 9/66 (13%)
Frame = +2
Query: 4 FSNEDVTIGAWMLAMNVNHENNHELCA---PECT------STSIAVWDIPKCSGLCNPEK 54
++NEDV++G+W + + V H ++ +C P+C + +A +D CSG+C +
Sbjct: 1076 YANEDVSLGSWFIGLEVEHIDDRSMCCGTPPDCEWKAQAGNICVASFDW-SCSGICKSVE 1252
Query: 55 RMLELH 60
++ +H
Sbjct: 1253 KIKYVH 1270
>TC93712 similar to GP|15292683|gb|AAK92710.1 unknown protein {Arabidopsis
thaliana}, partial (7%)
Length = 559
Score = 27.7 bits (60), Expect = 0.86
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +1
Query: 7 EDVTIGAWMLAMNVNHENNHELCAPECTS---TSIAVWDIPKCSGLCNPEKRMLELHQM 62
+D T+G+WM+ + + ++ LC + S+A D P S L + K +L M
Sbjct: 157 DDTTLGSWMMGVQSTYIDDSRLCCSSISKDKVCSLA*LDDPHVSLLVSESKDQCQLKIM 333
>TC86531
Length = 712
Score = 26.9 bits (58), Expect = 1.5
Identities = 18/51 (35%), Positives = 25/51 (48%)
Frame = -3
Query: 16 LAMNVNHENNHELCAPECTSTSIAVWDIPKCSGLCNPEKRMLELHQMESCT 66
LAMN NHE NH+ P+ + S + K N E R + L++ E T
Sbjct: 674 LAMNENHEMNHKQKLPKLNNLSKNILS-KKNFNTTNHEVRKIRLNKNEIFT 525
>TC79286 similar to GP|18481716|gb|AAL73538.1 putative T7N9 14 protein
{Sorghum bicolor}, partial (57%)
Length = 1545
Score = 25.8 bits (55), Expect = 3.3
Identities = 12/37 (32%), Positives = 19/37 (50%), Gaps = 5/37 (13%)
Frame = +3
Query: 2 RMFSNEDVTIGAWMLAMN-----VNHENNHELCAPEC 33
R+F EDV++G W+ N V + +N + C C
Sbjct: 1035 RLFKMEDVSMGMWVERFNHTVGAVQYSHNWKFCQYGC 1145
>TC89274 similar to GP|14211574|dbj|BAB56105. Na H-antiportor {Petunia x
hybrida}, partial (45%)
Length = 1008
Score = 25.8 bits (55), Expect = 3.3
Identities = 9/21 (42%), Positives = 12/21 (56%)
Frame = +2
Query: 11 IGAWMLAMNVNHENNHELCAP 31
+GA+ A NH+N H C P
Sbjct: 377 VGAYSTA*QCNHDNQHHHCCP 439
>CB894202 weakly similar to GP|23428550|gb Serine/threonine Kinase {Persea
americana}, partial (24%)
Length = 827
Score = 25.4 bits (54), Expect = 4.3
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 26 HELCAPECTSTSIAVWDIPKCSGLCNPEKRML 57
H + +P+ + + VW+ CS C+P KR+L
Sbjct: 19 HRISSPQQHAAN-NVWNSDVCSSRCSPWKRLL 111
>TC84387 homologue to GP|15217309|gb|AAK92653.1 Hypothetical protein {Oryza
sativa} [Oryza sativa (japonica cultivar-group)],
partial (3%)
Length = 1130
Score = 25.4 bits (54), Expect = 4.3
Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 3/21 (14%)
Frame = +1
Query: 30 APECTSTSIAV---WDIPKCS 47
AP C ++AV W+IPKCS
Sbjct: 268 APVCAVMNLAVALVWEIPKCS 330
>TC81022 similar to PIR|T52556|T52556 beta-amylase (EC 3.2.1.2) precursor
chloroplast [validated] - Arabidopsis thaliana, partial
(33%)
Length = 875
Score = 25.4 bits (54), Expect = 4.3
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +1
Query: 2 RMFSNEDVTIGAWMLAMNVNHENNHELCAPE 32
+MF+N DV + M + H C+PE
Sbjct: 169 KMFANHDVVFNFTCMEMKDREQPGHANCSPE 261
>CA916894 similar to PIR|A96790|A96 protein T23E18.18 [imported] -
Arabidopsis thaliana, partial (34%)
Length = 820
Score = 25.4 bits (54), Expect = 4.3
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = +3
Query: 47 SGLCNPEKRMLELH--QMESCTQSPTAESD 74
S L N + R +H Q SC QSPT S+
Sbjct: 147 SSLSNSQTRFCWIHGSQFRSCVQSPTHNSE 236
>TC89333 homologue to PIR|T01855|T01855 probable chaperonin-containing TCP-1
complex gamma chain F9D12.18 - Arabidopsis thaliana,
partial (52%)
Length = 1182
Score = 25.0 bits (53), Expect = 5.6
Identities = 13/44 (29%), Positives = 19/44 (42%), Gaps = 4/44 (9%)
Frame = -3
Query: 33 CTSTSIA----VWDIPKCSGLCNPEKRMLELHQMESCTQSPTAE 72
CTST+I +W + S C ++ Q CT S A+
Sbjct: 280 CTSTNIRFLQLIWSVHNNSTACLSNSIIISFPQSSDCTNSMLAQ 149
>BG454744 similar to PIR|S62667|S62 Nramp1 protein - rice, partial (29%)
Length = 665
Score = 25.0 bits (53), Expect = 5.6
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 4 FSNEDVTIGAWMLAMNVNHENNHELCAPECTSTSI 38
F+ D I A M ++ +H N++ AP C S S+
Sbjct: 379 FAASD*IISANMSPISTSHSNSYP*LAPACKSVSM 275
>BF641078 similar to GP|14423556|gb putative protein {Arabidopsis thaliana},
partial (23%)
Length = 643
Score = 25.0 bits (53), Expect = 5.6
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = -1
Query: 27 ELCAPECTSTSIAVWDIPKCSGLCNPEKRMLELHQMESCT 66
+ C P+ + S +P+ + L P K+++E + M CT
Sbjct: 211 QACNPKVGNCSNPQSSLPEKNHLKKPHKKLIEKYFMNPCT 92
>BE320311 similar to PIR|G84781|G847 hypothetical protein At2g36540
[imported] - Arabidopsis thaliana, partial (11%)
Length = 424
Score = 25.0 bits (53), Expect = 5.6
Identities = 13/46 (28%), Positives = 18/46 (38%)
Frame = +1
Query: 1 FRMFSNEDVTIGAWMLAMNVNHENNHELCAPECTSTSIAVWDIPKC 46
F F E +G W AM N + + + + VWD KC
Sbjct: 46 FMKFCLERFEVGVWSSAMEHNVDGALACAIGDSKNKLLFVWDQHKC 183
>BQ139600 similar to PIR|B84681|B846 hypothetical protein At2g28130
[imported] - Arabidopsis thaliana, partial (4%)
Length = 705
Score = 24.6 bits (52), Expect = 7.3
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -1
Query: 26 HELCAPECTSTSIAVWDIPKCSGLCNPEKRMLELHQM 62
H +CA + S+ I + LCN R L LH M
Sbjct: 291 HPICATIVETLSLWPMVIARVIALCNSYGRRLSLHLM 181
>BQ750853 similar to GP|13562018|gb fibroin 3 {Plectreurys tristis}, partial
(0%)
Length = 692
Score = 24.6 bits (52), Expect = 7.3
Identities = 12/43 (27%), Positives = 20/43 (45%)
Frame = -3
Query: 30 APECTSTSIAVWDIPKCSGLCNPEKRMLELHQMESCTQSPTAE 72
AP T ++ + +P C G+ P ++ L Q C Q P +
Sbjct: 684 APNMTEFTLTL-PLPHCQGVWKPVRQGLRPGQQPVCVQLPRGQ 559
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.317 0.127 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,131,763
Number of Sequences: 36976
Number of extensions: 49460
Number of successful extensions: 225
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of query: 74
length of database: 9,014,727
effective HSP length: 50
effective length of query: 24
effective length of database: 7,165,927
effective search space: 171982248
effective search space used: 171982248
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)
Lotus: description of TM0111a.4