TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0110a.16
         (1427 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsi...   214  1e-55
BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F2...   210  3e-54
BG587156 similar to PIR|G85055|G8 probable polyprotein [imported...   171  2e-42
CB893805 similar to GP|10177935|d copia-type polyprotein {Arabid...   169  7e-42
AW691018 weakly similar to GP|2462935|em open reading frame 1 {B...   145  1e-34
BF649643 similar to PIR|H86486|H86 protein Ty1/copia-element pol...   141  2e-33
TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative ret...   129  6e-30
BG644690 weakly similar to GP|18542179|gb putative pol protein {...   126  7e-29
BG587170 similar to PIR|F86470|F8 probable retroelement polyprot...   125  9e-29
TC81230                                                               101  2e-21
BG586293 weakly similar to PIR|E84473|E84 probable retroelement ...    89  9e-18
BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sati...    88  3e-17
BF645022 weakly similar to GP|8777581|dbj retroelement pol polyp...    85  2e-16
BQ122188 weakly similar to GP|9758772|dbj| contains similarity t...    79  1e-14
BI262917 weakly similar to GP|19920130|g Putative retroelement {...    75  1e-13
BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2...    74  4e-13
CB893680 weakly similar to GP|1167523|db ORF(AA 1-1338) {Nicotia...    72  2e-12
BG586273 weakly similar to PIR|F86470|F8 probable retroelement p...    70  4e-12
AW773859                                                               70  8e-12
BQ149380                                                               65  2e-10

>AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsis thaliana},
            partial (9%)
          Length = 675

 Score =  214 bits (546), Expect = 1e-55
 Identities = 101/195 (51%), Positives = 136/195 (68%)
 Frame = +1

Query: 931  PEWQQAMRTELAAMEANQTWDVVSLPPGKHEIGSKWVYKLKLHPDGSIDRHKARLVAKGY 990
            P W QAM+TE  A+  N+TWD+V LPP K  IG KWVY++K +PDGS+++ KARLVAKG+
Sbjct: 91   PRWLQAMKTEYKALIDNKTWDLVPLPPHKKAIGCKWVYRVKENPDGSVNKFKARLVAKGF 270

Query: 991  TQQNGIDYMDTFSPVAKITTVRMLLALAAMYKWELFQLDINNAFLNGDLFEEVYMKIPQG 1050
            +Q  G DY +TFSPV K  T+R++L +A  YKWE+ Q+DINNAFLNG L EEVYM  PQG
Sbjct: 271  SQTLGCDYTETFSPVIKPVTIRLILTIAITYKWEIQQIDINNAFLNGFLQEEVYMSQPQG 450

Query: 1051 YDVKGENLTCRLKKSIYGLKQASRQWFAKFSSVLTQHGFQHSYHDYSLFTKGSGDTFVVL 1110
            ++   ++L C+L KS+YGLKQA R W+   +S   Q GF  S  D SL         + L
Sbjct: 451  FEAANKSLVCKLNKSLYGLKQAPRAWYEXLTSAQIQFGFTKSRCDPSLLIYNQNGACIYL 630

Query: 1111 LVYVNDIIVSGPNAT 1125
             +YV+DI+++G +A+
Sbjct: 631  XIYVDDILITGSSAS 675


>BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F20P5.25
            [imported] - Arabidopsis thaliana, partial (10%)
          Length = 744

 Score =  210 bits (535), Expect = 3e-54
 Identities = 106/205 (51%), Positives = 139/205 (67%)
 Frame = +2

Query: 1060 CRLKKSIYGLKQASRQWFAKFSSVLTQHGFQHSYHDYSLFTKGSGDTFVVLLVYVNDIIV 1119
            C L+KSIYGLKQASRQW++K S  L   G+  S  D+SLFTK    +F  LLVYV+DI++
Sbjct: 23   CELQKSIYGLKQASRQWYSKLSESLISFGYLQSSSDFSLFTKFKDSSFTTLLVYVDDIVL 202

Query: 1120 SGPNATEIDSVKQLLKSAFKLKDLGKLKFFLGLEIAYSATGISLSQRAYALSLLHDTGFT 1179
            +G + +EI  VK  L   FK+KDLG L++FLGLE+A S  GI L+QR Y L LL D+G  
Sbjct: 203  AGNDISEIQHVKCFLIDRFKIKDLGSLRYFLGLEVARSKQGILLNQRKYTLELLEDSGNL 382

Query: 1180 DCRPTSLPMDPNLKLSSDTGPELADSSQYRRLIGRLLYLTISRPDIAFTMNKLSQFLSKP 1239
              + T  P D +LKL +   P   D +QYRRLIG+L+YLT +RPDI+F + +LSQF+SKP
Sbjct: 383  AVKSTLTPYDISLKLHNSDSPLYNDETQYRRLIGKLIYLTTTRPDISFAVQQLSQFVSKP 562

Query: 1240 TTTHLDALHHLLRYLKTTPGQGFFF 1264
               H  A   +L+YLKT P +G F+
Sbjct: 563  QQVHYQAAIRVLQYLKTAPAKGLFY 637


>BG587156 similar to PIR|G85055|G8 probable polyprotein [imported] -
            Arabidopsis thaliana, partial (17%)
          Length = 618

 Score =  171 bits (432), Expect = 2e-42
 Identities = 85/202 (42%), Positives = 131/202 (64%), Gaps = 2/202 (0%)
 Frame = -1

Query: 901  YDKLTPSYKVYSVKVASHYEPTYFHQAIQYPEWQQAMRTELAAMEANQTWDVVSLPPGKH 960
            + +   ++  + V +  ++ P  + +A++  EW++++  E  AM  N TW    LP GK 
Sbjct: 618  FSQYPEAHCAFMVNLNENHIPRSYEEAMEDKEWKESVGAEAGAMIKNDTWYESELPKGKK 439

Query: 961  EIGSKWVYKLKLHPDGSIDRHKARLVAKGYTQQNGIDYMDTFSPVAKITTVRMLLALAAM 1020
             + S+W++ +K   DGSI+R K RLVA+G+T   G DY++TF+PVAK+ T+R++L+LA  
Sbjct: 438  AVSSRWIFTIKYKADGSIERKKTRLVARGFTLTYGEDYIETFAPVAKLHTIRIVLSLAVN 259

Query: 1021 YKWELFQLDINNAFLNGDLFEEVYMKIPQGYD--VKGENLTCRLKKSIYGLKQASRQWFA 1078
              W L+Q+D+ NAFL G+L +EVYM  P G +  VK  N+  RLKK+IYGLKQ+ R W+ 
Sbjct: 258  LGWGLWQMDVKNAFLQGELEDEVYMYPPPGLEHLVKRGNV-LRLKKAIYGLKQSPRAWYN 82

Query: 1079 KFSSVLTQHGFQHSYHDYSLFT 1100
            K S+ L   GF+ S  D++LFT
Sbjct: 81   KLSTTLNGRGFRKSELDHTLFT 16


>CB893805 similar to GP|10177935|d copia-type polyprotein {Arabidopsis
            thaliana}, partial (14%)
          Length = 778

 Score =  169 bits (428), Expect = 7e-42
 Identities = 87/245 (35%), Positives = 149/245 (60%), Gaps = 3/245 (1%)
 Frame = +3

Query: 920  EPTYFHQAIQYPEWQQAMRTELAAMEANQTWDVVSLPPGKHEIGSKWVYKLKLHPDGSID 979
            +PT F +A++  +W+ +M  E+ A E N TW++  L  G   IG KW++K KL+ +G I+
Sbjct: 39   DPTTFEEAVKSEKWRASMNNEMEATERNNTWELTDLRSGAKTIGLKWIFKTKLNENGEIE 218

Query: 980  RHKARLVAKGYTQQNGIDYMDTFSPVAKITTVRMLLALAAMYKWELFQLDINNAFLNGDL 1039
            ++KARLVAKGY+QQ G+DY + F+PVA+  T+RM++ALAA  K +   + I+        
Sbjct: 219  KYKARLVAKGYSQQYGVDYTEVFAPVARWDTIRMVIALAAQIKRD--GVCIS*M*KAHSC 392

Query: 1040 FEEVYMK--IPQGYDVKGENLTCRLKKSIYGLKQASRQWFAKFSSVLTQHGFQHSYHDYS 1097
             E    K  +     +    ++ R+K+++YGLKQA R W+++  +  T+ GF+   ++++
Sbjct: 393  MEN*MRKFLLINHRVM*RRVIS*RVKRALYGLKQAPRAWYSRIEAYFTKEGFEKCPYEHT 572

Query: 1098 LFTK-GSGDTFVVLLVYVNDIIVSGPNATEIDSVKQLLKSAFKLKDLGKLKFFLGLEIAY 1156
            LF K   G   +++ +YV+D+I  G +    +  K+ +K  F + DLGK+ +FLG+E+  
Sbjct: 573  LFVKLSEGGKILIISLYVDDLIFIGNDENMFEEFKKSMKKEFNMSDLGKMHYFLGVEVTQ 752

Query: 1157 SATGI 1161
            +  GI
Sbjct: 753  NEKGI 767


>AW691018 weakly similar to GP|2462935|em open reading frame 1 {Brassica
           oleracea}, partial (12%)
          Length = 639

 Score =  145 bits (365), Expect = 1e-34
 Identities = 68/145 (46%), Positives = 99/145 (67%), Gaps = 1/145 (0%)
 Frame = +2

Query: 16  RIMENS-SNPFFLHHSDNPGLILVSQPLNGENYNSWNRSMMIALSVKNKLGFINGDFPRP 74
           + ME S  +P  LHHSD PG+ LV+QPLNG NY  W+RSM+++LS KNKLG I+G    P
Sbjct: 128 KAMETSLPDPLLLHHSDTPGISLVNQPLNGGNYGEWSRSMLLSLSAKNKLGLIDGTVKAP 307

Query: 75  ADDDPLLQSWIRNDHVVMSWILNCVSKDIVSSVICCRSAKEIWQDLQDRFHQPNGTRIYQ 134
           + DDP L  W R + +V++WIL+ +  DI  SVI   +A  +W DL DRF Q + +RIYQ
Sbjct: 308 SADDPKLPLWKRCNDLVLTWILHSIEPDIARSVIFSDTAAAVWSDLHDRFSQGDESRIYQ 487

Query: 135 LKKDLLNLQQESLTVTQFYTKHKAI 159
           +++++   +Q SL ++ +YTK K++
Sbjct: 488 IRQEISECRQGSLLISDYYTKLKSL 562


>BF649643 similar to PIR|H86486|H86 protein Ty1/copia-element polyprotein
           [imported] - Arabidopsis thaliana, partial (2%)
          Length = 608

 Score =  141 bits (356), Expect = 2e-33
 Identities = 64/155 (41%), Positives = 104/155 (66%), Gaps = 2/155 (1%)
 Frame = +1

Query: 20  NSSNPFFLHHSDNPGLILVSQPLNGENYNSWNRSMMIALSVKNKLGFINGDFPRPADDDP 79
           +SSNP+++H SD+PG +LV   LNG NY+SW+RSM+ AL+ KNK+GFING    P++ D 
Sbjct: 109 DSSNPYYIHPSDHPGHLLVPTKLNGTNYSSWSRSMVHALTAKNKVGFINGSIKTPSEVDQ 288

Query: 80  LLQS--WIRNDHVVMSWILNCVSKDIVSSVICCRSAKEIWQDLQDRFHQPNGTRIYQLKK 137
             +   W R + +++SW+ + V  D+   VI  ++A ++W+D +D+F Q N   IYQ++K
Sbjct: 289 PAEYALWNRCNSMILSWLTHSVEPDLAKGVIHAKTACQVWEDFKDQFSQKNIPAIYQIQK 468

Query: 138 DLLNLQQESLTVTQFYTKHKAIWDELQDYLPQRSC 172
            L +L Q +++ + ++TK K +WDEL+ Y    +C
Sbjct: 469 SLASLSQGTVSASTYFTKIKGLWDELETYRTLPTC 573


>TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative retroelement
           {Oryza sativa} [Oryza sativa (japonica cultivar-group)],
           partial (10%)
          Length = 823

 Score =  129 bits (325), Expect = 6e-30
 Identities = 83/260 (31%), Positives = 123/260 (46%), Gaps = 7/260 (2%)
 Frame = +1

Query: 559 QKRLPFVSENHFANHSFDLIHCDVWGPFHVPTHVGHRFFLTIVDDHSRFTWTFLIKHKSE 618
           +K++ F +  H      D IH D+WGP  V ++ G R+ +TI+DD  R  W + +++K+E
Sbjct: 49  RKKVSFSTATHRTKGILDYIHSDLWGPSKVTSYGGRRYMMTIIDDFPRKVWVYFLRYKNE 228

Query: 619 APLAIMAFFKMVQTQFGKVIKMVRTDNAKEL---QLTAFLEKQGTLHQFSCVERPQQNSV 675
                  +  +V+TQ GK +K + TDN  E        F    G     +    PQQN V
Sbjct: 229 TFPTFKKWRILVETQTGKNVKKLITDN*LEFCSSDFNEFCTNHGIARHKTIPRNPQQNGV 408

Query: 676 VERRHQQLLNVARSLLFQSHM--PLVFWGECISTATHLINLIPTPNLHNKSPSTLLYQQD 733
            ER  + LL  AR +L  + +      W E  STA HL+N  P   L  K P  +     
Sbjct: 409 AERMIRTLLERARCMLSNAGL*N*RDLWVEAASTACHLVNRSPHSALDFKVPEDIWSGNL 588

Query: 734 PSYDHLRVFGCLCFSSTLPSTRHKFSPRAVPCVLVGYKQGYKGYKLYNLTTKT--FHISR 791
             Y +LR+FGC  ++        K +PRA  C+ + Y    KGY+L+    K+    +SR
Sbjct: 589 VDYSNLRIFGCPAYALV---NDGKLAPRAGECIFLSYASESKGYRLWCSDPKSQKLILSR 759

Query: 792 DVVFNESIFPFQNTRPYVYS 811
           DV FNE        + +V S
Sbjct: 760 DVTFNEDALLSSGKQSFVSS 819


>BG644690 weakly similar to GP|18542179|gb putative pol protein {Zea mays},
            partial (22%)
          Length = 629

 Score =  126 bits (316), Expect = 7e-29
 Identities = 62/141 (43%), Positives = 96/141 (67%), Gaps = 1/141 (0%)
 Frame = -2

Query: 978  IDRHKARLVAKGYTQQNGIDYMDTFSPVAKITTVRMLLALAAMYKWELFQLDINNAFLNG 1037
            I R+K++LV +GY Q+ GIDY + FSPVA++  +R+L+A AA   ++L+Q+D+ +AF+NG
Sbjct: 424  ITRNKSKLVVQGYNQKEGIDYDEAFSPVARMEAIRILIAFAAFMGFKLYQMDVKSAFING 245

Query: 1038 DLFEEVYMKIPQGY-DVKGENLTCRLKKSIYGLKQASRQWFAKFSSVLTQHGFQHSYHDY 1096
            DL EEV++K P G+ D +  N   RL K++YGLKQA R W+ + S  L ++GF+    D 
Sbjct: 244  DLKEEVFVKQPPGFEDAEVPNHVFRLNKTLYGLKQAPRAWYERLSKFLLKNGFKRGKIDN 65

Query: 1097 SLFTKGSGDTFVVLLVYVNDI 1117
            +LF        +++ VYV+DI
Sbjct: 64   TLFLLKRE*ELLIIQVYVDDI 2


>BG587170 similar to PIR|F86470|F8 probable retroelement polyprotein
           [imported] - Arabidopsis thaliana, partial (13%)
          Length = 718

 Score =  125 bits (315), Expect = 9e-29
 Identities = 96/271 (35%), Positives = 135/271 (49%), Gaps = 4/271 (1%)
 Frame = -3

Query: 457 VIQENKLKTIGRGDTHNGLYYLHASSNNVFSASTSPLSVLNSLCNQSVFPSHCNKSTCTA 516
           VI+ ++L  IG G T   LY L             P+S  N  C+ +   S  NK     
Sbjct: 713 VIESSQL--IGEGVTKGDLYMLE---------KLDPVS--NYKCSFTS-SSSLNKD---- 588

Query: 517 ALWHARLGHPSYNRLSLLSSTIHCKIPSSINENV-CPVCPLAKQKRLPFVSENHFANHSF 575
           ALWHARLGHP    L+L+       +P  + EN  C  C L K  +  F   +    + F
Sbjct: 587 ALWHARLGHPHGRALNLM-------LPGVVFENKNCEACILGKHCKNVFPRTSTVYENCF 429

Query: 576 DLIHCDVWGPFHVPTHVGHRFFLTIVDDHSRFTWTFLIKHKSEAPLAIMAFFKMVQTQFG 635
           DLI+ D+W    + +   H++F+T +D+ S++TW  LI  K     A   F   V   + 
Sbjct: 428 DLIYTDLWTAPSL-SRDNHKYFVTFIDEKSKYTWLTLIPSKDRVIDAFKNFQAYVTNHYH 252

Query: 636 KVIKMVRTDNAKELQLTAF---LEKQGTLHQFSCVERPQQNSVVERRHQQLLNVARSLLF 692
             IK++R+DN  E    AF   L+  G LHQ SC   PQQN V +R+++ L+ VARSL+F
Sbjct: 251 AKIKILRSDNGGEYTSYAFKSHLDHHGILHQTSCPYTPQQNGVAKRKNKHLMEVARSLMF 72

Query: 693 QSHMPLVFWGECISTATHLINLIPTPNLHNK 723
           Q++         +STA +LIN IPT  L  K
Sbjct: 71  QAN---------VSTACYLINWIPTKVLRIK 6


>TC81230 
          Length = 958

 Score =  101 bits (252), Expect = 2e-21
 Identities = 70/248 (28%), Positives = 110/248 (44%), Gaps = 9/248 (3%)
 Frame = +1

Query: 38  VSQPLNGENYNSWNRSMMIALSVKNKLGFINGD--FPRPADDDPL------LQSWIRNDH 89
           +S  LNG NYN W  SM   L  +    ++ GD   P    DD        L+ W   +H
Sbjct: 226 ISIILNGSNYNHWAESMCGFLKGRRLWRYVTGDKKCPTKGKDDTADAFADKLEEWDSKNH 405

Query: 90  VVMSWILNCVSKDIVSSVICCRSAKEIWQDLQDRFHQPNGTRIYQLKKDLLNLQQES-LT 148
            +++W  N     I        +AKE+W  L+ R+   + +  YQL KDL NL+Q+S   
Sbjct: 406 QIITWFRNTSIPSIHMQFGRFENAKEVWDHLKQRYTISDLSHQYQLLKDLSNLKQQSGQP 585

Query: 149 VTQFYTKHKAIWDELQDYLPQRSCVCGENRVLLDYFQQEQIMHFLMSLSDSYNQIKSHVL 208
           V +F  + + IW++L    P       + +    +  + +++ FLM+L+D Y  +++  L
Sbjct: 586 VYEFLAQMEVIWNQLTSCEPSLKDAT-DMKTYETHRNRVRLIQFLMALTDEYEPVRASSL 762

Query: 209 LMNPLPPMNRVFSMVLQEEKQREIAARSADLNSAFAAQATNSGKSGKKDRDRPLCSYCGK 268
             NPLP +      +  EE + ++    ADL  A    AT              C +C K
Sbjct: 763 HQNPLPTLENALPCLKSEETRLQLVPPKADLAFAVTNNATKP------------CRHCQK 906

Query: 269 LGHSVDRC 276
            GHS   C
Sbjct: 907 SGHSFSDC 930


>BG586293 weakly similar to PIR|E84473|E84 probable retroelement pol
            polyprotein [imported] - Arabidopsis thaliana, partial
            (7%)
          Length = 763

 Score = 89.4 bits (220), Expect = 9e-18
 Identities = 43/90 (47%), Positives = 62/90 (68%)
 Frame = +2

Query: 948  QTWDVVSLPPGKHEIGSKWVYKLKLHPDGSIDRHKARLVAKGYTQQNGIDYMDTFSPVAK 1007
            QT  +V  P G   IG +W+YK+K + DG++ ++KARLVAKGY +Q GID+ + F+PV +
Sbjct: 53   QTLKLVKKPTGVKPIGLRWIYKIKRNEDGTLIKYKARLVAKGYVKQQGIDFDEVFAPVVR 232

Query: 1008 ITTVRMLLALAAMYKWELFQLDINNAFLNG 1037
            I T+ +LLALAA     +  +D+  AFLNG
Sbjct: 233  IETI*LLLALAATNGC*IHHIDVKIAFLNG 322


>BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sativa (japonica
            cultivar-group)}, partial (8%)
          Length = 503

 Score = 87.8 bits (216), Expect = 3e-17
 Identities = 47/122 (38%), Positives = 71/122 (57%), Gaps = 1/122 (0%)
 Frame = +1

Query: 1071 QASRQWFAKFSSVLTQHGFQHSYHDYSLFTKGSGDTF-VVLLVYVNDIIVSGPNATEIDS 1129
            Q+ R WF +F+ V+ + G+     D+++F K S      +L+VYV+DI ++G +   I  
Sbjct: 1    QSPRDWFDRFT*VVKKFGYIQCQTDHAMFIKHSSTVKKAILIVYVDDIFLTGDHGK*IKR 180

Query: 1130 VKQLLKSAFKLKDLGKLKFFLGLEIAYSATGISLSQRAYALSLLHDTGFTDCRPTSLPMD 1189
            +K LL   F++KDLG LK+FLG+E+A    G S+SQR Y L LL +T    C+    P  
Sbjct: 181  LKNLLAEEFEIKDLGNLKYFLGMEVARWKKGSSISQRKYVLDLLKETRMIGCKTIRDPYG 360

Query: 1190 PN 1191
             N
Sbjct: 361  CN 366



 Score = 56.2 bits (134), Expect = 9e-08
 Identities = 24/57 (42%), Positives = 39/57 (68%)
 Frame = +2

Query: 1180 DCRPTSLPMDPNLKLSSDTGPELADSSQYRRLIGRLLYLTISRPDIAFTMNKLSQFL 1236
            D +P+  PMD  +KL +     L D  +Y+RL+G+L+YL+ +RPDI+F +  +SQF+
Sbjct: 332  DVKPSETPMDATVKLGTLDNGTLVDKGRYQRLVGKLIYLSHTRPDISFVVCTMSQFM 502


>BF645022 weakly similar to GP|8777581|dbj retroelement pol polyprotein-like
           {Arabidopsis thaliana}, partial (8%)
          Length = 685

 Score = 84.7 bits (208), Expect = 2e-16
 Identities = 44/136 (32%), Positives = 72/136 (52%), Gaps = 7/136 (5%)
 Frame = -2

Query: 16  RIMENSSNP-------FFLHHSDNPGLILVSQPLNGENYNSWNRSMMIALSVKNKLGFIN 68
           ++ +NSSN        FFL  +DNPG ++    L G NY+ W+R++  +   K K GF+ 
Sbjct: 423 KVDDNSSNSEKKVDLVFFLGSNDNPGNVITPIQLRGLNYDEWSRAIRTSFQAKRKYGFVE 244

Query: 69  GDFPRPADDDPLLQSWIRNDHVVMSWILNCVSKDIVSSVICCRSAKEIWQDLQDRFHQPN 128
           G  P+P   +  L+ W     ++++W+LN +   + S++     A+ +W  L+ RF   N
Sbjct: 243 GKIPKPTTPEK-LEDWKAVQSMLIAWLLNTIEPSLRSTLSYYDDAESLWTHLKQRFCVVN 67

Query: 129 GTRIYQLKKDLLNLQQ 144
           G RI QLK  L   +Q
Sbjct: 66  GARICQLKASLGECKQ 19


>BQ122188 weakly similar to GP|9758772|dbj| contains similarity to
           retroelement pol polyprotein~gene_id:MNJ7.3 {Arabidopsis
           thaliana}, partial (7%)
          Length = 708

 Score = 79.0 bits (193), Expect = 1e-14
 Identities = 37/68 (54%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
 Frame = -3

Query: 20  NSSNPFFLHHSDNPGLILVSQPLNG-ENYNSWNRSMMIALSVKNKLGFINGDFPRPADDD 78
           N+SNPFFLH S+NP + LV+ PL G +N+ SW RSM +AL+ KNK+ F++G F  PA  D
Sbjct: 205 NASNPFFLHPSENPAVELVTPPLEGNKNFQSWIRSMRLALTSKNKIAFVDGTFLTPAKSD 26

Query: 79  PLLQSWIR 86
            L   WIR
Sbjct: 25  ALYNQWIR 2


>BI262917 weakly similar to GP|19920130|g Putative retroelement {Oryza
           sativa} [Oryza sativa (japonica cultivar-group)],
           partial (8%)
          Length = 426

 Score = 75.5 bits (184), Expect = 1e-13
 Identities = 38/112 (33%), Positives = 58/112 (50%)
 Frame = +1

Query: 670 PQQNSVVERRHQQLLNVARSLLFQSHMPLVFWGECISTATHLINLIPTPNLHNKSPSTLL 729
           PQQN V ER ++ LL   R++L  + M   FW E + TA ++IN  P+  +  K+P  + 
Sbjct: 88  PQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTVIDLKTPMEMW 267

Query: 730 YQQDPSYDHLRVFGCLCFSSTLPSTRHKFSPRAVPCVLVGYKQGYKGYKLYN 781
             +   Y  L VFGC  +       R K  P++  C+ +GY    KGY L++
Sbjct: 268 KGKPVDYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYXLWD 423


>BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2O9.150 -
            Arabidopsis thaliana, partial (11%)
          Length = 732

 Score = 73.9 bits (180), Expect = 4e-13
 Identities = 35/113 (30%), Positives = 62/113 (53%)
 Frame = +1

Query: 1152 LEIAYSATGISLSQRAYALSLLHDTGFTDCRPTSLPMDPNLKLSSDTGPELADSSQYRRL 1211
            +E+  +  GI + QR Y   LL   G      +  P+ P  KL  D      D+++Y+++
Sbjct: 1    VEVIQNEEGIYICQRKYVTDLLERFGMEKSNLSRNPIAPRCKLIKDENGVKVDATKYKQI 180

Query: 1212 IGRLLYLTISRPDIAFTMNKLSQFLSKPTTTHLDALHHLLRYLKTTPGQGFFF 1264
            +G L+YL  +RPD+ + ++ +S+F++ PT  H+ A+  +LRYL  T   G  +
Sbjct: 181  VGCLMYLAATRPDLMYVLSLISRFMNCPTELHMHAVKRVLRYLNGTINLGIMY 339


>CB893680 weakly similar to GP|1167523|db ORF(AA 1-1338) {Nicotiana tabacum},
            partial (7%)
          Length = 780

 Score = 72.0 bits (175), Expect = 2e-12
 Identities = 39/108 (36%), Positives = 62/108 (57%)
 Frame = -2

Query: 983  ARLVAKGYTQQNGIDYMDTFSPVAKITTVRMLLALAAMYKWELFQLDINNAFLNGDLFEE 1042
            +R++AKG         +  F P+ K+ T+  LL++ A+    L  LD+  AFL GDL E+
Sbjct: 593  SRILAKGRI------LL*NFVPIVKLNTIMFLLSIVAIENLYLE*LDVKTAFLRGDLVED 432

Query: 1043 VYMKIPQGYDVKGENLTCRLKKSIYGLKQASRQWFAKFSSVLTQHGFQ 1090
            +YM  P+G+  +   +  +LKKS+YGLKQ  RQ      ++ T+ GF+
Sbjct: 431  IYMHQPEGFS*EVGKMVGKLKKSMYGLKQGPRQCI*SLKALCTRKGFR 288


>BG586273 weakly similar to PIR|F86470|F8 probable retroelement polyprotein
           [imported] - Arabidopsis thaliana, partial (7%)
          Length = 705

 Score = 70.5 bits (171), Expect = 4e-12
 Identities = 36/90 (40%), Positives = 52/90 (57%)
 Frame = -2

Query: 708 ATHLINLIPTPNLHNKSPSTLLYQQDPSYDHLRVFGCLCFSSTLPSTRHKFSPRAVPCVL 767
           A +LIN IPT  L +++P  +L Q+ PS  ++RVFGCLC+       R+K   R+   + 
Sbjct: 704 ACYLINRIPTRVLKDQAPFEVLNQRKPSLTYMRVFGCLCYVLVPGELRNKLEARSRKAMF 525

Query: 768 VGYKQGYKGYKLYNLTTKTFHISRDVVFNE 797
           +GY    KGYK Y+   +   +SRDV F E
Sbjct: 524 IGYSTTQKGYKCYDPEARRVLVSRDVKFIE 435


>AW773859 
          Length = 538

 Score = 69.7 bits (169), Expect = 8e-12
 Identities = 46/143 (32%), Positives = 73/143 (50%), Gaps = 5/143 (3%)
 Frame = -3

Query: 449 IHFFH--KTFVIQENK-LKTIGRGDTHNGLYYLHASSNNVFSASTSPLSVLNSLCNQSVF 505
           + +FH  +  +IQE + LK IG G+   GLY+L           T   ++ +S       
Sbjct: 413 VRWFHTLQVILIQEKRSLKMIGSGELFEGLYFLTTQD-------TPSATIASSQVQPQPQ 255

Query: 506 PSHCNKSTCTAALWHARLGHPSYNRLSLLSSTIHCKIPS-SINEN-VCPVCPLAKQKRLP 563
           P+   +     ALWH RLGH S  +L     ++H   P  +I++N VC +C  ++ K+LP
Sbjct: 254 PTFLPQE----ALWHFRLGHLSNRKLL----SLHSNFPFITIDQNSVCDICHYSRHKKLP 99

Query: 564 FVSENHFANHSFDLIHCDVWGPF 586
           F    + A+  ++L H D+WGPF
Sbjct: 98  FQLSTNRASKCYELFHFDIWGPF 30


>BQ149380 
          Length = 419

 Score = 65.1 bits (157), Expect = 2e-10
 Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 9/84 (10%)
 Frame = +3

Query: 157 KAIWDELQDYLPQRSCVCG---------ENRVLLDYFQQEQIMHFLMSLSDSYNQIKSHV 207
           + +WDEL  Y P+  C C           N+ L     +++I+ FLM L+D Y  + S V
Sbjct: 75  RGLWDELDQYRPKPQCTCPIQCTCFAMRNNKALT---AEDRIIKFLMGLNDDYQGVTSKV 245

Query: 208 LLMNPLPPMNRVFSMVLQEEKQRE 231
           LLM PLP +N VFSMV+Q+E++ +
Sbjct: 246 LLMYPLPQINMVFSMVMQQERKMQ 317


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.323    0.136    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,723,418
Number of Sequences: 36976
Number of extensions: 934333
Number of successful extensions: 5644
Number of sequences better than 10.0: 102
Number of HSP's better than 10.0 without gapping: 5364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5601
length of query: 1427
length of database: 9,014,727
effective HSP length: 108
effective length of query: 1319
effective length of database: 5,021,319
effective search space: 6623119761
effective search space used: 6623119761
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 65 (29.6 bits)