TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0110a.15
         (184 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BI267523                                                               84  4e-17
TC87130 weakly similar to PIR|T04067|T04067 hypothetical protein...    37  0.004
BE999344 similar to PIR|T29150|T291 hypothetical protein F47B3.4...    33  0.084
TC88259 similar to GP|6729037|gb|AAF27033.1| unknown protein {Ar...    29  1.2
TC93414 homologue to GP|17907114|emb|CAD13249. tyrosine kinase {...    28  1.6
TC86725 similar to GP|9758909|dbj|BAB09485.1 NAM (no apical meri...    28  2.1
BQ144095 weakly similar to GP|12842949|dbj| data source:SPTR  so...    27  3.5
TC83330 similar to GP|9758939|dbj|BAB09320.1 contains similarity...    27  4.6
TC90038 similar to PIR|A84451|A84451 probable AAA-type ATPase [i...    27  6.0
TC90045 similar to SP|P49160|CEMA_SOYBN Chloroplast envelope mem...    27  6.0
AW127339 similar to PIR|G84912|G849 probable acyl-CoA synthetase...    27  6.0

>BI267523 
          Length = 602

 Score = 83.6 bits (205), Expect = 4e-17
 Identities = 43/68 (63%), Positives = 49/68 (71%)
 Frame = +2

Query: 13  HSLFSHTVNNRTYTFLIDPPFIYFAIFDHRHTKSQTLTFLNRIRSSLKETLDSVNDSTAP 72
           HS FSHTVNNRTYTFLI+PPF+ FAIFD    KS  +TFLNRIRSSL E L+  ++ T  
Sbjct: 377 HSFFSHTVNNRTYTFLIEPPFVLFAIFDTHLLKSHAITFLNRIRSSLIEPLNKNDNFT-- 550

Query: 73  PPLSLQTP 80
            P  LQ P
Sbjct: 551 -PFXLQPP 571


>TC87130 weakly similar to PIR|T04067|T04067 hypothetical protein F28M11.90
           - Arabidopsis thaliana, partial (71%)
          Length = 1510

 Score = 37.0 bits (84), Expect = 0.004
 Identities = 16/51 (31%), Positives = 25/51 (48%)
 Frame = +1

Query: 11  STHSLFSHTVNNRTYTFLIDPPFIYFAIFDHRHTKSQTLTFLNRIRSSLKE 61
           S H  +  T+  RTY FL++  ++YF I D        L FL  +R   ++
Sbjct: 514 SFHRWYFETIGKRTYGFLVEDGYVYFTIVDEGLGNLVVLRFLEHVRDEFRK 666


>BE999344 similar to PIR|T29150|T291 hypothetical protein F47B3.4 -
           Caenorhabditis elegans, partial (7%)
          Length = 596

 Score = 32.7 bits (73), Expect = 0.084
 Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 7/128 (5%)
 Frame = +3

Query: 21  NNRTYTFLIDPPFIYFAIFDHRHTKS--QTLTFLNRIRSSLKETLDSVNDSTA--PPPLS 76
           ++R  TFL+  P ++    DH HT S  Q    ++R   S    L   N+ T+  PPP+S
Sbjct: 30  HHRRLTFLLSSPSLF*LTLDHLHTLSLQQKTLLISRHLLSFLHLLTQSNNPTSPLPPPVS 209

Query: 77  L---QTPFDLILQEILHLDDGNRSPPAVVGISHDEGLKKKKMVVDSATVIANRTSAKGLA 133
               +   D +L  +L  +    +P A+        L   K +  +  +  + +SA  L 
Sbjct: 210 TSMRERDTDAVLLLLLFCETHKYNPEALTAPFSHWRLNLNK-IFSNTLLTLSYSSAPPLG 386

Query: 134 AAAATELV 141
           A   + L+
Sbjct: 387 ACFGSVLI 410


>TC88259 similar to GP|6729037|gb|AAF27033.1| unknown protein {Arabidopsis
           thaliana}, partial (35%)
          Length = 1757

 Score = 28.9 bits (63), Expect = 1.2
 Identities = 25/85 (29%), Positives = 43/85 (50%)
 Frame = +3

Query: 100 AVVGISHDEGLKKKKMVVDSATVIANRTSAKGLAAAAATELVELEKDAVEEALVGSAIQI 159
           AV   SHD G ++ ++    A + A   ++K  AAA+    ++   +AVE+    S++Q+
Sbjct: 699 AVANNSHDSGSRRFELERKVAELEAQLQTSKAEAAASIRSDLQRRLEAVEKE--NSSLQL 872

Query: 160 EGFRRVWLDLRSRLSLLHESRSEKD 184
           E        L+SRL  L    +E+D
Sbjct: 873 E--------LQSRLEELEFRIAERD 923


>TC93414 homologue to GP|17907114|emb|CAD13249. tyrosine kinase {Schistosoma
           mansoni}, partial (1%)
          Length = 578

 Score = 28.5 bits (62), Expect = 1.6
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
 Frame = +1

Query: 13  HSLFSHTVNNRTYTF------LIDPPFIYFAIFDHRHTKSQTLTFLNRI 55
           HS  S TV++ T  F      L  PP +  + F H H K+ +  FLN +
Sbjct: 247 HSPASSTVSHPTSLFPPSADPLQTPPLLLLSPFHHSHQKNSSPPFLNLV 393


>TC86725 similar to GP|9758909|dbj|BAB09485.1 NAM (no apical meristem)-like
           protein {Arabidopsis thaliana}, partial (50%)
          Length = 1645

 Score = 28.1 bits (61), Expect = 2.1
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = +3

Query: 8   SKGSTHSLFSHTVNNRTYTFLIDPPFIYFAIFDHRHTKSQTLTFLNRIRSSLKETLDSVN 67
           S+   + L S ++NN  + FLI P   Y  I   +H  + T+  +N    S +  L++  
Sbjct: 810 SQSDGYYLPSFSINNNQHQFLIKPEDNYHRINYDQHEINPTM--MNYTSISNQSNLNNPI 983

Query: 68  DSTAP-PPLSLQTP 80
            +T P P + +Q P
Sbjct: 984 GNTLPQPQIRIQNP 1025


>BQ144095 weakly similar to GP|12842949|dbj| data source:SPTR  source
           key:Q9Y2Y1  evidence:ISS~homolog to PUTATIVE
           DNA-DIRECTED RNA POLYMERASE, partial (39%)
          Length = 615

 Score = 27.3 bits (59), Expect = 3.5
 Identities = 12/27 (44%), Positives = 16/27 (58%)
 Frame = -3

Query: 13  HSLFSHTVNNRTYTFLIDPPFIYFAIF 39
           HSLF    +  T + LI PP+IY  I+
Sbjct: 541 HSLFLSASHYNTSSHLIHPPYIYIYIY 461


>TC83330 similar to GP|9758939|dbj|BAB09320.1 contains similarity to isoamyl
           acetate-hydrolyzing esterase~gene_id:K15I22.12
           {Arabidopsis thaliana}, partial (73%)
          Length = 797

 Score = 26.9 bits (58), Expect = 4.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 25  YTFLIDPPFIYFAIFDHRHTKSQTLTF 51
           Y +L+D PFI   +  H H K++  +F
Sbjct: 103 YIYLVDLPFILSFLHQHDHDKAKDFSF 183


>TC90038 similar to PIR|A84451|A84451 probable AAA-type ATPase [imported]
          - Arabidopsis thaliana, partial (43%)
          Length = 1000

 Score = 26.6 bits (57), Expect = 6.0
 Identities = 10/18 (55%), Positives = 13/18 (71%)
 Frame = +2

Query: 16 FSHTVNNRTYTFLIDPPF 33
          FSH+VNN+   F + PPF
Sbjct: 56 FSHSVNNQRRLFFLVPPF 109


>TC90045 similar to SP|P49160|CEMA_SOYBN Chloroplast envelope membrane
           protein. [Soybean] {Glycine max}, partial (94%)
          Length = 1076

 Score = 26.6 bits (57), Expect = 6.0
 Identities = 20/72 (27%), Positives = 30/72 (40%)
 Frame = +2

Query: 10  GSTHSLFSHTVNNRTYTFLIDPPFIYFAIFDHRHTKSQTLTFLNRIRSSLKETLDSVNDS 69
           GS +  F  T NN+  + L+      F +      K     +LNR+  SL     S+ND 
Sbjct: 494 GSVYKDFGFTQNNQIISGLVST----FPVILDTILKYWIFRYLNRVSPSLVVIYHSMND* 661

Query: 70  TAPPPLSLQTPF 81
              P + L+  F
Sbjct: 662 KNDPLIQLENLF 697


>AW127339 similar to PIR|G84912|G849 probable acyl-CoA synthetase [imported]
           - Arabidopsis thaliana, partial (8%)
          Length = 350

 Score = 26.6 bits (57), Expect = 6.0
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 43  HTKSQTLTFLNRIRSSLKETLDSVNDSTAPPPLSL 77
           HTK+Q +T  N   S LK     +   T PP L+L
Sbjct: 267 HTKAQVVTRKNSSISELKAAPPDIISLTRPPSLAL 163


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.316    0.132    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,404,926
Number of Sequences: 36976
Number of extensions: 73225
Number of successful extensions: 441
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of query: 184
length of database: 9,014,727
effective HSP length: 90
effective length of query: 94
effective length of database: 5,686,887
effective search space: 534567378
effective search space used: 534567378
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)