TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0110a.10
         (1408 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG587143 weakly similar to PIR|A96586|A9 hypothetical protein F2...   176  4e-44
BG586306 weakly similar to GP|15128241|db helicase-like protein ...    79  2e-14
CA859513                                                               50  5e-06
BI309215 SP|P03749|VH Host specificity protein J. {Bacteriophage...    33  0.60
TC85038 weakly similar to PIR|G86449|G86449 hypothetical protein...    32  1.7
TC86457 similar to SP|Q06364|PSD3_DAUCA Probable 26S proteasome ...    31  3.9
AW684274 similar to PIR|T17000|T170 oxygenase ARRO-1  2-oxoacid ...    30  5.1
BF633595                                                               30  6.6
TC87516 PIR|T09591|T09591 probable cdc2-like protein kinase cdc2...    30  8.6

>BG587143 weakly similar to PIR|A96586|A9 hypothetical protein F20D21.24
           [imported] - Arabidopsis thaliana, partial (12%)
          Length = 717

 Score =  176 bits (447), Expect = 4e-44
 Identities = 84/175 (48%), Positives = 117/175 (66%), Gaps = 3/175 (1%)
 Frame = -3

Query: 499 MYTIEFQKRGLPHAHILLWLSAEYKLNSIAMIDSVICAEVPDPKLYPSLFECVSNYMVHG 558
           ++ IEFQKRGL HAHILLW     +  S   +D +I AE+P+ K  P  +  V+ +M+HG
Sbjct: 589 LHRIEFQKRGLRHAHILLWFGNSSRTPSSEEVDEIISAELPNKKQDPEAYNLVTKHMIHG 410

Query: 559 PCGLSKRESPCMKNGRCAKFFPKKYADVTTFDSDGYPVYRRR-NTGVSTNRRGVDLDNGF 617
           PCG+   +SPCM+N  C K +P+ Y   T+ D  GY +YRRR N      + G  L+N F
Sbjct: 409 PCGVINPKSPCMENNVCTKKYPRPYNGSTSIDKSGYVLYRRR*NETEHVVKNGAILNNTF 230

Query: 618 VVPYNPKLLMKYQAHINIEYCNKSNSIKYLFKYINKGVDRVTLSMSSGR--TTQD 670
           +VP+N KLL KY+AHIN+E+CN+++++KYLFKYI KGVDRV++ +  G   TT D
Sbjct: 229 IVPHNIKLLKKYEAHINMEWCNRTSAVKYLFKYITKGVDRVSVVIEKGNPATTSD 65


>BG586306 weakly similar to GP|15128241|db helicase-like protein {Oryza
           sativa (japonica cultivar-group)}, partial (2%)
          Length = 667

 Score = 78.6 bits (192), Expect = 2e-14
 Identities = 38/76 (50%), Positives = 52/76 (68%)
 Frame = +2

Query: 46  RHFLDNIRSYNSMFAFTSIGGKVDCGLNDGRGPPQFVISGQNYHRIGSLVPTEGDNPKFA 105
           R F D IR YNS+ AFTSIG K+D  + +  G     I GQ +HRI SL+P +G  P++ 
Sbjct: 5   RWFRDTIRVYNSVLAFTSIGMKMDYSVVNAPGRYTIRIQGQTHHRIDSLIPRQGRPPEYL 184

Query: 106 QLYIYDTKNEVQNRMS 121
           Q+YI+DT NEV+NR++
Sbjct: 185 QIYIFDTGNEVRNRLN 232


>CA859513 
          Length = 363

 Score = 50.4 bits (119), Expect = 5e-06
 Identities = 26/73 (35%), Positives = 38/73 (51%)
 Frame = +1

Query: 499 MYTIEFQKRGLPHAHILLWLSAEYKLNSIAMIDSVICAEVPDPKLYPSLFECVSNYMVHG 558
           +Y  EF+K  LPHAH+L   +  Y        D+ + AE+ DP     L++ V + M+HG
Sbjct: 136 IYVAEFEKCDLPHAHMLFHRADNY--------DTFVSAELSDPVEQLRLYQTVVSVMIHG 291

Query: 559 PCGLSKRESPCMK 571
           P G      PCM+
Sbjct: 292 PYGPFNNNVPCMR 330


>BI309215 SP|P03749|VH Host specificity protein J. {Bacteriophage lambda},
           partial (15%)
          Length = 545

 Score = 33.5 bits (75), Expect = 0.60
 Identities = 30/90 (33%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
 Frame = +3

Query: 765 PELFVYDP--KSKSWHPRKQGESIGRMSFVPPGTGE-LYYLRMLLNVQRGCTKYEDLRSV 821
           P L VYDP  + + W   KQ   I ++       G  LY++   +N++ G   Y  +RSV
Sbjct: 99  PHLAVYDPTVQFEFWFSEKQIADIRQVETSTRYLGTALYWIAASINIKPGHDYYFYIRSV 278

Query: 822 NNNVHDTFRGACEALGLLKDDREFIDGILD 851
           N      F    EA+G   DD E   G LD
Sbjct: 279 NTVGKSAF---VEAVGRASDDAE---GYLD 350


>TC85038 weakly similar to PIR|G86449|G86449 hypothetical protein AAF81343.1
            [imported] - Arabidopsis thaliana, partial (14%)
          Length = 652

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 14/26 (53%), Positives = 18/26 (68%)
 Frame = +2

Query: 1016 NFCSI*G*WWVFLCQWTWWYGENILV 1041
            N CS *G WW +LCQ T +Y  +I+V
Sbjct: 533  NLCSS*G-WWHYLCQLTCFYSNHIVV 607


>TC86457 similar to SP|Q06364|PSD3_DAUCA Probable 26S proteasome non-ATPase
            regulatory subunit 3 (26S proteasome subunit S3), partial
            (96%)
          Length = 1913

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
 Frame = +1

Query: 1273 LYLLQ--LWMLLILLIDTRCLYSMPRRGLI*ALIQYGVLMKRLPLKRIGLQLNFLMIS 1328
            LYLL   +++LL+L +   CL   PRR     ++++   ++ LP K + LQLN   +S
Sbjct: 325  LYLLFSIMFLLLVLNLMLNCLRIFPRR----MIMRWRWTLQHLPFKPLSLQLNTCCLS 486


>AW684274 similar to PIR|T17000|T170 oxygenase ARRO-1  2-oxoacid dependent -
           apple tree, partial (29%)
          Length = 524

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = -3

Query: 865 FVSFLLPNS--MCN--PLHVWNETWHVLADGIACDLQRKHNNRGMCL 907
           FV F LPN   +C+  PL  ++E WH +   I   L +  N+RG+ L
Sbjct: 444 FVLF*LPNHVLLCHMPPLFPFDEVWHSIESRIHAQLVKNLNHRGLKL 304


>BF633595 
          Length = 313

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 136 IYVDMCLIVFSYLCEIVVILVANVHLK 162
           IY+ + L +F Y+C  V   V+NVHLK
Sbjct: 184 IYIAVSLFIFYYICLHVWFKVSNVHLK 264


>TC87516 PIR|T09591|T09591 probable cdc2-like protein kinase cdc2MsF -
            alfalfa, complete
          Length = 1251

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 11/48 (22%), Positives = 28/48 (57%)
 Frame = +2

Query: 1244 LLIL*VTLYPQCIQISNKMLVVCSIFKTRLYLLQLWMLLILLIDTRCL 1291
            L++L  + YP    + N   ++ S++  +L+++++W+ L  L+   C+
Sbjct: 1040 LIMLLSSAYPSLF*VDNICRLIFSLYSIKLWIVRIWIKLNSLVRKECM 1183


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.353    0.158    0.566 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,460,904
Number of Sequences: 36976
Number of extensions: 795861
Number of successful extensions: 10128
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 3184
Number of HSP's successfully gapped in prelim test: 518
Number of HSP's that attempted gapping in prelim test: 6657
Number of HSP's gapped (non-prelim): 4323
length of query: 1408
length of database: 9,014,727
effective HSP length: 108
effective length of query: 1300
effective length of database: 5,021,319
effective search space: 6527714700
effective search space used: 6527714700
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.5 bits)
S2: 65 (29.6 bits)