TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0108.13
         (1262 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AW256686 similar to GP|7269000|emb| contains EST gb:AI998867.1 {...    35  0.18
BQ136714 similar to GP|22795875|emb maturase {Boopis graminea}, ...    34  0.41
BG587889 similar to GP|22136974|gb putative villin 2 protein {Ar...    33  0.91
TC81004 weakly similar to SP|Q39529|LEC2_CLALU Agglutinin II pre...    32  1.6
TC77503 weakly similar to GP|16930417|gb|AAL31894.1 At2g24420/T2...    32  1.6
TC91313 similar to GP|15292869|gb|AAK92805.1 unknown protein {Ar...    31  3.5
BG586181 similar to GP|4689316|gb| peroxisomal targeting signal ...    31  3.5
BQ137252 similar to GP|6523547|emb| hydroxyproline-rich glycopro...    31  3.5
AL389529                                                               31  3.5
TC88610 homologue to PIR|G96755|G96755 developmental protein hom...    31  3.5
TC77784 similar to GP|14272369|emb|CAC40022. bZIP transcription ...    30  4.5
TC82780 similar to PIR|T00713|T00713 helicase homolog F22O13.8 -...    30  4.5
TC77199 similar to SP|O04379|AGO1_ARATH Argonaute protein. [Mous...    30  5.9
TC88994 similar to GP|20260620|gb|AAM13208.1 unknown protein {Ar...    30  7.7

>AW256686 similar to GP|7269000|emb| contains EST gb:AI998867.1 {Arabidopsis
            thaliana}, partial (3%)
          Length = 632

 Score = 35.0 bits (79), Expect = 0.18
 Identities = 28/119 (23%), Positives = 54/119 (44%), Gaps = 1/119 (0%)
 Frame = +1

Query: 898  ENASESKITPVLNRCPRIKSLKHAG-SPTYKRLLPLLSNAKKYNSCASVNRHDPKHQKFL 956
            E A+E  +     R     +L+H   SP  +R +    + +   +CA+VN H  +H++ +
Sbjct: 31   EAANEYAMKQECQRAEERMTLRHKQKSPWLQRKMQRGLDKQDIGTCAAVNEHFQRHEELI 210

Query: 957  DQTPLLPISDSDLRATSGGDSNDSVPMEHFTANSGTKQQKELNACELNDDSSSPRSRSP 1015
             +   +  S SD  +T   D+ ++   +   AN+  ++ K+     L +D   P S  P
Sbjct: 211  RKMYNMDSSSSD-DSTYEEDNENTADSDLDKANNILRKAKQKTVEVLEEDDKMPNSGLP 384


>BQ136714 similar to GP|22795875|emb maturase {Boopis graminea}, partial (4%)
          Length = 1268

 Score = 33.9 bits (76), Expect = 0.41
 Identities = 25/77 (32%), Positives = 37/77 (47%), Gaps = 4/77 (5%)
 Frame = +2

Query: 7   LRESASAMEETLISRKRSNPSSS---PPGALTRSRSQLFV-HRNRSGQRRPDSGPRQGGL 62
           +R+  S  E T  + K +  SS+   P    T  R+   + HR R  + RP  GP +GG 
Sbjct: 125 MRQDTSITERTNKTEKTARDSST*TVPRRPPTHPRTPTPLGHRQRPPRPRP--GPERGGG 298

Query: 63  YSGLGGSSGNDEKREPP 79
              + G +G  +K EPP
Sbjct: 299 ACSVAGEAGRCQKEEPP 349


>BG587889 similar to GP|22136974|gb putative villin 2 protein {Arabidopsis
           thaliana}, partial (15%)
          Length = 799

 Score = 32.7 bits (73), Expect = 0.91
 Identities = 25/81 (30%), Positives = 40/81 (48%), Gaps = 3/81 (3%)
 Frame = -1

Query: 375 PLSSQSEKPSEPELKSESFTMRETNGSKLSSSQNLLESPMELNEREVSGECL---SVPSG 431
           PL S+S + S   L S + +  E + S L+S   L  + + L   EVSG+C    +V + 
Sbjct: 655 PLLSESGETSSTSLASVASSTSEYSLSLLASEMLLSGTGLSLATGEVSGDCFFFSAVRTD 476

Query: 432 DDKCFNESKCDPAADSDGVKV 452
           +      + CDP   +DG+ V
Sbjct: 475 ERAATAAALCDP*PFTDGLGV 413


>TC81004 weakly similar to SP|Q39529|LEC2_CLALU Agglutinin II precursor
            (ClAII) (LecClAII). [Yellow wood] {Cladrastis lutea},
            partial (24%)
          Length = 610

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 17/37 (45%), Positives = 24/37 (63%)
 Frame = +1

Query: 1042 PESSSGTPISVRRIDSPSTPLRPIVNEVMAREEATFA 1078
            PESSSG  +    + SP T  +PI+N+++A E  TFA
Sbjct: 139  PESSSGGYLG---LFSPETAFKPIINQIVAVEFDTFA 240


>TC77503 weakly similar to GP|16930417|gb|AAL31894.1 At2g24420/T28I24.15
           {Arabidopsis thaliana}, partial (54%)
          Length = 1787

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 24/104 (23%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
 Frame = +2

Query: 738 IKHMQNSISSLQERGPSPKDQSM--LYVNVGVSNQTLEHHSSEVKGFSVNNGEVKQLLNM 795
           I+ +QN ++SLQ++G    ++ +   Y   G   + ++   SE+           +  N 
Sbjct: 353 IQSLQNEVASLQKKGSLDAEEQVGKAYARAGELQKQVDKLKSEL-----------EAQNS 499

Query: 796 EKRKYVSRYPSEGQSSSQLDTDMQDLEE-NERSNGAIRKSDDAV 838
           EK  + SR     +    L++ ++D+++ NE     IRK++ A+
Sbjct: 500 EKVNWESRVAKLEKKIHDLNSKLEDVQKINEEQKKQIRKTERAL 631


>TC91313 similar to GP|15292869|gb|AAK92805.1 unknown protein {Arabidopsis
            thaliana}, partial (54%)
          Length = 806

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +2

Query: 1130 FKKGILKRNPRGCRGLCTCLNCASFRLHAERAFEYSRNQLLDAEEV 1175
            F+KG+ +         C+C+ C   RL+  R F+Y R +L     V
Sbjct: 503  FQKGLKQNIHSATCSSCSCVQCVK*RLNLGRVFQYMRVRLTQGNRV 640


>BG586181 similar to GP|4689316|gb| peroxisomal targeting signal type 2
           receptor {Arabidopsis thaliana}, partial (56%)
          Length = 804

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 17/59 (28%), Positives = 27/59 (44%), Gaps = 7/59 (11%)
 Frame = -1

Query: 905 ITPVLNRCPRIKSLKHAGSPTYKRLLPLLSNAKKYNSCASVNRHD-------PKHQKFL 956
           + P L+RCPRI S+     P   + +P  ++ K +N    +N +        P HQ  L
Sbjct: 561 LVPSLSRCPRISSM----LPNINKFIPTSTSKKPFNKNTHINPNSKLSMMIIPTHQSIL 397


>BQ137252 similar to GP|6523547|emb| hydroxyproline-rich glycoprotein DZ-HRGP
           {Volvox carteri f. nagariensis}, partial (10%)
          Length = 1067

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 22/74 (29%), Positives = 29/74 (38%)
 Frame = +1

Query: 30  PPGALTRSRSQLFVHRNRSGQRRPDSGPRQGGLYSGLGGSSGNDEKREPPEEDDGDTLLV 89
           PP +  R        R R G+   D  PR+G   S  GG  G   +R   EE +      
Sbjct: 19  PPDSTGRRDPAATEKREREGKGNEDDAPRRGKKNSAGGGREGRGAERGRGEESE------ 180

Query: 90  KYLRKKAKRDDDGG 103
              RK+A+    GG
Sbjct: 181 --RRKRARGGGAGG 216


>AL389529 
          Length = 421

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -3

Query: 259 SKVDGDEGKGEEDLLVRDAPFTGKAENSGEGLSRKDSKRN 298
           +K+D  +  G   L+    PFT   E S E L+RK +KRN
Sbjct: 146 AKIDNFDDNGRXSLVTLXTPFTRAHEFSXELLARKFTKRN 27


>TC88610 homologue to PIR|G96755|G96755 developmental protein homolog DG1118
           [imported] - Arabidopsis thaliana, partial (79%)
          Length = 689

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 25/116 (21%), Positives = 52/116 (44%), Gaps = 6/116 (5%)
 Frame = +3

Query: 643 SNALGNILFNSANELSNGNLPKLTSSQDLPE-----LPMQSDVKE-VVQECLSAPSVEEP 696
           S ++GNI+ +  + L+ GNL K++ + D  E     + +Q++  E  +    S  + E  
Sbjct: 159 SKSMGNIVKSLESSLATGNLQKMSETMDQFEKQFVNMEVQAEFMESAMAGSTSLSTPEGE 338

Query: 697 IEKAVVGSKDECSREPNFDLCSAIVDFHSTKIVANDGHDVDIKHMQNSISSLQERG 752
           +   +    D+   E + +L   +   H+  +   D   VD   +   ++ L+ RG
Sbjct: 339 VNSLMQQVADDYGLEVSVNL--PVAAAHAVPVKEKDAEKVDEDDLSRRLAELKARG 500


>TC77784 similar to GP|14272369|emb|CAC40022. bZIP transcription factor
           {Arabidopsis thaliana}, partial (72%)
          Length = 2052

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 21/66 (31%), Positives = 32/66 (47%), Gaps = 2/66 (3%)
 Frame = +3

Query: 346 NWPDNFVGTKKLGHCDKDEKGMGGQDFQLPLSSQSEKPSEPE--LKSESFTMRETNGSKL 403
           +WP  F  T  +G  +K     GG+     LSS++E P EPE  L S+  +   ++ +  
Sbjct: 552 SWPMRFHQTSTVGGGNKS----GGESSDSALSSKNENPFEPESPLSSKKASSFSSDHNNN 719

Query: 404 SSSQNL 409
              QNL
Sbjct: 720 MDQQNL 737


>TC82780 similar to PIR|T00713|T00713 helicase homolog F22O13.8 -
           Arabidopsis thaliana, partial (5%)
          Length = 563

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 20/97 (20%), Positives = 43/97 (43%)
 Frame = +2

Query: 767 VSNQTLEHHSSEVKGFSVNNGEVKQLLNMEKRKYVSRYPSEGQSSSQLDTDMQDLEENER 826
           ++  +L+H      G S ++  ++ LL     ++++ Y        + + +    EE + 
Sbjct: 128 LAGDSLKHTVPHSNGSSYSDKLMESLLGKHHPRWIANYHLHESLLQENEEEKLSKEEQDM 307

Query: 827 SNGAIRKSDDAVVLNHVGVSNEVPRPPPENIISKTQD 863
           +    RKS +   +  V +   VP P PE  +SK ++
Sbjct: 308 AWEVYRKSLEWEEVQRVPIGESVPDPKPE--VSKAEE 412


>TC77199 similar to SP|O04379|AGO1_ARATH Argonaute protein. [Mouse-ear
           cress] {Arabidopsis thaliana}, partial (74%)
          Length = 2714

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 15/62 (24%), Positives = 26/62 (41%)
 Frame = -2

Query: 685 QECLSAPSVEEPIEKAVVGSKDECSREPNFDLCSAIVDFHSTKIVANDGHDVDIKHMQNS 744
           +EC  + S+      A+         + NFD    + D HS  I    G D+ +K + N 
Sbjct: 568 REC*FSGSLGSQTSNAIFSPHIATMCDFNFDTTKCLFDLHSISIRQRPGRDIPVKQLGNE 389

Query: 745 IS 746
           ++
Sbjct: 388 LN 383


>TC88994 similar to GP|20260620|gb|AAM13208.1 unknown protein {Arabidopsis
           thaliana}, partial (16%)
          Length = 888

 Score = 29.6 bits (65), Expect = 7.7
 Identities = 23/87 (26%), Positives = 43/87 (48%), Gaps = 3/87 (3%)
 Frame = +2

Query: 696 PIEKAVVGSKDECSREPNFDLCSAIVDFHSTKIVANDG---HDVDIKHMQNSISSLQERG 752
           P+++A+V    E ++EPNF+L   + D +   +  +DG    DV  +  +     +Q + 
Sbjct: 308 PLQEAMVKDTLERTKEPNFNLKDFLHDAYIHPVFNDDGDTDSDVMSQEWKEEPVIVQTKR 487

Query: 753 PSPKDQSMLYVNVGVSNQTLEHHSSEV 779
            S K+      + G S QT  H +++V
Sbjct: 488 QSRKNTPAPSKHSGGSLQTSMHGTTDV 568


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.311    0.131    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,528,702
Number of Sequences: 36976
Number of extensions: 493227
Number of successful extensions: 1979
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1978
length of query: 1262
length of database: 9,014,727
effective HSP length: 107
effective length of query: 1155
effective length of database: 5,058,295
effective search space: 5842330725
effective search space used: 5842330725
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 64 (29.3 bits)