BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0108.1
(915 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC79701 homologue to PIR|T06242|T06242 aspartate kinase (EC 2.7.... 323 e-131
BI308328 similar to PIR|T06242|T06 aspartate kinase (EC 2.7.2.4)... 407 e-123
TC87267 similar to PIR|T06242|T06242 aspartate kinase (EC 2.7.2.... 379 e-105
BI308719 similar to PIR|T06242|T06 aspartate kinase (EC 2.7.2.4)... 354 1e-97
TC85113 homologue to PIR|T06242|T06242 aspartate kinase (EC 2.7.... 115 8e-50
TC77477 homologue to GP|5305740|gb|AAD41796.1| precursor monofun... 179 6e-45
BE248159 homologue to PIR|T06246|T062 aspartate kinase (EC 2.7.2... 147 2e-35
BF632875 similar to PIR|T06242|T062 aspartate kinase (EC 2.7.2.4... 84 2e-16
TC87100 homologue to GP|9293891|dbj|BAB01794.1 contains similari... 37 0.034
TC90992 similar to PIR|F86242|F86242 unknown protein 98896-9585... 34 0.29
BG587776 weakly similar to PIR|F86242|F86 unknown protein 98896... 33 0.50
TC89482 similar to SP|Q9M3H5|AHM1_ARATH Potential cadmium/zinc-t... 30 4.2
TC76514 homologue to PIR|T09648|T09648 nucleolin homolog nuM1 - ... 29 7.2
TC87729 similar to GP|9759461|dbj|BAB10377.1 gene_id:MAF19.15~un... 29 7.2
BG448933 similar to PIR|T09648|T09 nucleolin homolog nuM1 - alfa... 29 7.2
AW560816 similar to GP|9759433|dbj gene_id:MQD22.4~pir||T06699~s... 29 7.2
>TC79701 homologue to PIR|T06242|T06242 aspartate kinase (EC 2.7.2.4) /
homoserine dehydrogenase (EC 1.1.1.3) precursor -
soybean, partial (28%)
Length = 1042
Score = 323 bits (828), Expect(2) = e-131
Identities = 163/175 (93%), Positives = 172/175 (98%)
Frame = +1
Query: 741 KDGRAFSEVVQEAKEAGYTEPDPRDDLSGTDVARKVIILARESGLKLELSNIPVESLVPE 800
KDGRAFSEVV EAKEAGYTEPDPRDDLSGTDVARKVIILARESGLKLELSNIP+ESLVPE
Sbjct: 253 KDGRAFSEVVGEAKEAGYTEPDPRDDLSGTDVARKVIILARESGLKLELSNIPIESLVPE 432
Query: 801 PLQACASAQEFMQRLPEFDQMFAKKLEEAENAGEVLRYVGVVDVTSKKGVVELRRYKKDH 860
PL+ACASAQEFMQ+LP+FDQ FAKK E+A+NAGEVLRYVGVVDVT+KKGVVELR+YKKDH
Sbjct: 433 PLRACASAQEFMQQLPKFDQEFAKKQEDADNAGEVLRYVGVVDVTNKKGVVELRKYKKDH 612
Query: 861 PFAQLSGSDNIIAFTTRRYKDQPLIVRGPGAGAQVTAGGIFSDILRLASYLGAPS 915
PFAQLSGSDNIIAFTTRRYK+QPLIVRGPGAGAQVTAGGIFSDILRLASYLGAPS
Sbjct: 613 PFAQLSGSDNIIAFTTRRYKNQPLIVRGPGAGAQVTAGGIFSDILRLASYLGAPS 777
Score = 164 bits (416), Expect(2) = e-131
Identities = 78/84 (92%), Positives = 83/84 (97%)
Frame = +3
Query: 658 YDWLRKGIHVVTPNKKANSGPLDQYLKLRALQRQSYTHYFYEATVGAGLPIVSTLRGLLE 717
Y+WL KGIHV+TPNKKANSGPL+QYL+LRALQRQSYTHYFYEATVGAGLPIVSTLRGLLE
Sbjct: 3 YEWLCKGIHVITPNKKANSGPLEQYLRLRALQRQSYTHYFYEATVGAGLPIVSTLRGLLE 182
Query: 718 TGDRILQIEGIFSGTLSYIFNNFK 741
TGD+ILQIEGIFSGTLSYIFNNFK
Sbjct: 183 TGDKILQIEGIFSGTLSYIFNNFK 254
>BI308328 similar to PIR|T06242|T06 aspartate kinase (EC 2.7.2.4) /
homoserine dehydrogenase (EC 1.1.1.3) precursor -
soybean, partial (28%)
Length = 833
Score = 407 bits (1046), Expect(2) = e-123
Identities = 203/245 (82%), Positives = 225/245 (90%)
Frame = +2
Query: 297 IMGALFRARQVTIWTDVDGVYSADPRKVSEAVILKTLSYQEAWEMSYFGANVLHPRTIIP 356
+ GA+FRARQVTIWTDVDGVYSADPRKVS+AVILKTLSYQEAWEMSYFGANVLHPRTI P
Sbjct: 8 LWGAIFRARQVTIWTDVDGVYSADPRKVSDAVILKTLSYQEAWEMSYFGANVLHPRTISP 187
Query: 357 VMQYGIPILIRNIFNLSAPGTKICHPSVNDNEDMMNVKNFVKGFATIDNLALINVEGTGM 416
V++YGIPI+IRNIFN SA GTKICHPS+ +NED +K++VKGF TIDNLAL+NVEGTGM
Sbjct: 188 VIRYGIPIIIRNIFNTSASGTKICHPSIIENEDKKILKDYVKGFTTIDNLALVNVEGTGM 367
Query: 417 AGVPGTASAIFGAVKDVGANVIMISQASSEHSICFAVPEKEVKAVAEALQSRFRHALDNG 476
AGVPGTAS IF AVK+VGANVIMISQASSEHS+CFAVPEKEVKAVAE L+S F AL G
Sbjct: 368 AGVPGTASTIFSAVKEVGANVIMISQASSEHSVCFAVPEKEVKAVAEVLESIFDSALFAG 547
Query: 477 RLSQVAIIPNCSILAAVGQKMASTPGVSATLFNALAKANINVRAIAQGCSEYNITVVLKR 536
R+SQVA+I NCSILAAVGQKMASTPGVSATLFNALA+ANIN+ AIAQGCSEYN+TVVLKR
Sbjct: 548 RISQVAVISNCSILAAVGQKMASTPGVSATLFNALAQANINILAIAQGCSEYNVTVVLKR 727
Query: 537 EDCVK 541
ED ++
Sbjct: 728 EDSIR 742
Score = 53.9 bits (128), Expect(2) = e-123
Identities = 25/30 (83%), Positives = 29/30 (96%)
Frame = +1
Query: 541 KALRAVHSRFYLSRTTIAMGIIGPGLIGST 570
KALRAVHSRFY S+TT+AMGIIGPGL+G+T
Sbjct: 739 KALRAVHSRFYNSQTTMAMGIIGPGLMGAT 828
Score = 38.5 bits (88), Expect = 0.012
Identities = 20/63 (31%), Positives = 37/63 (57%)
Frame = +2
Query: 484 IPNCSILAAVGQKMASTPGVSATLFNALAKANINVRAIAQGCSEYNITVVLKREDCVKAL 543
I N +++ G MA PG ++T+F+A+ + NV I+Q SE+++ + ++ VKA+
Sbjct: 326 IDNLALVNVEGTGMAGVPGTASTIFSAVKEVGANVIMISQASSEHSVCFAVPEKE-VKAV 502
Query: 544 RAV 546
V
Sbjct: 503 AEV 511
>TC87267 similar to PIR|T06242|T06242 aspartate kinase (EC 2.7.2.4) /
homoserine dehydrogenase (EC 1.1.1.3) precursor -
soybean, partial (24%)
Length = 817
Score = 379 bits (972), Expect = e-105
Identities = 200/256 (78%), Positives = 219/256 (85%), Gaps = 2/256 (0%)
Frame = +3
Query: 1 MASLSASSLYHFSTISPSNNTPDIT-KI-SQCQCLPFLPSHRSHSLRKALSLLPRGNQSP 58
MAS +SSL HFS IS ++ D KI + QC FL S R HSLRK ++L PR +SP
Sbjct: 51 MASSLSSSLSHFSRISVTSLQHDYNNKIPADSQCRHFLLSRRFHSLRKGITL-PRRRESP 227
Query: 59 STKISASLTDVSPSVLVEEQQLQKGETWSVHKFGGTCMGSSQRIKNVGDIVLEDDSERKL 118
S+ I ASLTDVS +V VEE++L KG++WSVHKFGGTCMGSSQRIKNVGDIVL DDSERKL
Sbjct: 228 SSGICASLTDVSVNVAVEEKELSKGDSWSVHKFGGTCMGSSQRIKNVGDIVLNDDSERKL 407
Query: 119 VVVSAMSKVTDMMYELINKAQSRDESYVSSLDAVLEKHSLTAHDLLDGDGLATFLSQLHH 178
VVVSAMSKVTDMMY+LINKAQSRDESY+SSLDAVLEKHS TAHD+LDG+ LA FLS+LH
Sbjct: 408 VVVSAMSKVTDMMYDLINKAQSRDESYISSLDAVLEKHSATAHDILDGETLAIFLSKLHE 587
Query: 179 DISNLKAMLRAIYIAGHATESFTDFVVGHGELWSAQMLSLVIRKNGADCKWMDTRDVLIV 238
DISNLKAMLRAIYIAGH TESFTDFVVGHGELWSAQMLSLVIRKNG DCKWMDTR+VLIV
Sbjct: 588 DISNLKAMLRAIYIAGHVTESFTDFVVGHGELWSAQMLSLVIRKNGIDCKWMDTREVLIV 767
Query: 239 NPTSSNQVDPDYLESE 254
NPTS NQVDPDY ESE
Sbjct: 768 NPTSXNQVDPDYXESE 815
>BI308719 similar to PIR|T06242|T06 aspartate kinase (EC 2.7.2.4) /
homoserine dehydrogenase (EC 1.1.1.3) precursor -
soybean, partial (21%)
Length = 591
Score = 354 bits (908), Expect = 1e-97
Identities = 170/197 (86%), Positives = 183/197 (92%)
Frame = +1
Query: 575 LRDQASILKEEFNIDLRVMGILGSKSMLLSDWGIDLARWRELRDESGEVANLEKFVQHVH 634
LRDQA+ LKEE NIDLRVMGI+GSKSMLL D GIDL +WRE+R+E GEVA+LEKFVQHVH
Sbjct: 1 LRDQAATLKEESNIDLRVMGIMGSKSMLLDDLGIDLVKWREIREEKGEVADLEKFVQHVH 180
Query: 635 GNHFIPNTAIVDCTADSVIAGHYYDWLRKGIHVVTPNKKANSGPLDQYLKLRALQRQSYT 694
GNH IPNT +VDCTADSVIA HY DWLRKGIHV+TPNKKANSGPL +YL+LRALQRQSYT
Sbjct: 181 GNHVIPNTVLVDCTADSVIASHYDDWLRKGIHVITPNKKANSGPLSEYLRLRALQRQSYT 360
Query: 695 HYFYEATVGAGLPIVSTLRGLLETGDRILQIEGIFSGTLSYIFNNFKDGRAFSEVVQEAK 754
HYFYEATVGAGLPI+ TLRGLLETGD+ILQIEGIFSGTLSYIFNNFKDG+ FSEVV EAK
Sbjct: 361 HYFYEATVGAGLPIIGTLRGLLETGDKILQIEGIFSGTLSYIFNNFKDGQVFSEVVAEAK 540
Query: 755 EAGYTEPDPRDDLSGTD 771
EAGYTEPDPRDDLSGTD
Sbjct: 541 EAGYTEPDPRDDLSGTD 591
>TC85113 homologue to PIR|T06242|T06242 aspartate kinase (EC 2.7.2.4) /
homoserine dehydrogenase (EC 1.1.1.3) precursor -
soybean, partial (14%)
Length = 414
Score = 115 bits (289), Expect(2) = 8e-50
Identities = 59/67 (88%), Positives = 62/67 (92%)
Frame = +1
Query: 476 GRLSQVAIIPNCSILAAVGQKMASTPGVSATLFNALAKANINVRAIAQGCSEYNITVVLK 535
G LSQVA+IPNCSILAAVGQKMASTPGVSATLFNALAKANINVRAIAQGCSEYNIT V+K
Sbjct: 163 GSLSQVAVIPNCSILAAVGQKMASTPGVSATLFNALAKANINVRAIAQGCSEYNITDVIK 342
Query: 536 REDCVKA 542
ED K+
Sbjct: 343 PEDSYKS 363
Score = 100 bits (250), Expect(2) = 8e-50
Identities = 51/55 (92%), Positives = 53/55 (95%)
Frame = +3
Query: 423 ASAIFGAVKDVGANVIMISQASSEHSICFAVPEKEVKAVAEALQSRFRHALDNGR 477
ASAIF AVKDVGANVIMISQASSEHS+CFAVPEKEVKAVAEALQSRFR ALDNG+
Sbjct: 3 ASAIFAAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALQSRFRQALDNGQ 167
Score = 39.3 bits (90), Expect = 0.007
Identities = 18/28 (64%), Positives = 23/28 (81%)
Frame = +2
Query: 530 ITVVLKREDCVKALRAVHSRFYLSRTTI 557
+ ++L + +KALRAVHSRFYLSRTTI
Sbjct: 326 LLMLLSQRIVIKALRAVHSRFYLSRTTI 409
>TC77477 homologue to GP|5305740|gb|AAD41796.1| precursor monofunctional
aspartokinase {Glycine max}, partial (84%)
Length = 2339
Score = 179 bits (453), Expect = 6e-45
Identities = 128/469 (27%), Positives = 234/469 (49%), Gaps = 5/469 (1%)
Frame = +3
Query: 88 VHKFGGTCMGSSQRIKNVGDIVLEDDSERKLVVVSAMSKVTDMMYELINKAQSRDESYVS 147
V KFGG+ + S++R+ V +V+ ER +VV+SAM K T+ + KA S + V
Sbjct: 420 VMKFGGSSVASAERMMEVAGLVMSFPEERPIVVLSAMGKTTNKLLLAGEKAVSCGVTNVC 599
Query: 148 SLDAVLEKHSLTAHDLLDGDGLATFLSQLHHDISNLKAMLRAIYIAGHATESFTDFVVGH 207
++ E + L D L S + + L+ +L I + T+ D++V
Sbjct: 600 GIE---ELSFIKDLHLRTVDQLGVDRSIIEKHLEALEQLLNGIAMMKELTKRTQDYLVSF 770
Query: 208 GELWSAQMLSLVIRKNGADCKWMDTRDVLIVNP---TSSNQVDPDYLESEKRLETWFSLN 264
GE S ++ + + K G + D ++ + T+++ ++ Y KRL + +
Sbjct: 771 GECMSTRIFAAYLNKLGVKARQYDAFEIGFITTDDFTNADILEATYPAVAKRLHGDWLAD 950
Query: 265 PCKVIIATGFIASTPQKIP-TTLKRDGSDFSAAIMGALFRARQVTIWTDVDGVYSADPRK 323
P + I TGF+ + TTL R GSD +A +G ++ +W DVDGV + DP
Sbjct: 951 PA-IAIVTGFLGKARKSCAVTTLGRGGSDLTATTIGKALGLPEIQVWKDVDGVLTCDPNI 1127
Query: 324 VSEAVILKTLSYQEAWEMSYFGANVLHPRTIIPVMQYGIPILIRNIFNLSAPGTKICHPS 383
+A + L++ EA E++YFGA VLHP+++ P + IP+ ++N +N +APGT I
Sbjct: 1128YPKAEPVPFLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLI---- 1295
Query: 384 VNDNEDMMNVKNFVKGFATIDNLALINVEGTGMAGVPGTASAIFGAVKDVGANVIMISQA 443
DM K + N+ ++++ T M G G + +F +D+G +V ++ A
Sbjct: 1296-TKERDMS--KAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSIFEDLGISVDVV--A 1460
Query: 444 SSEHSICFAVPEKEVKAVAEALQSRFRHALDN-GRLSQVAIIPNCSILAAVGQKMASTPG 502
+SE S+ + ++ + E +Q H ++ +++ V ++ N SI++ +G S+
Sbjct: 1461TSEVSVSLTLDPSKLWS-RELIQQELDHVVEELEKIAVVNLLQNRSIISLIGNVQQSSL- 1634
Query: 503 VSATLFNALAKANINVRAIAQGCSEYNITVVLKREDCVKALRAVHSRFY 551
+ F L + V+ I+QG S+ NI++V+ + + +RA+H F+
Sbjct: 1635ILEKAFRVLRTLGVTVQMISQGASKVNISLVVNDSEAEECVRALHHAFF 1781
>BE248159 homologue to PIR|T06246|T062 aspartate kinase (EC 2.7.2.4) /
homoserine dehydrogenase (EC 1.1.1.3) precursor -
soybean (fragment), partial (8%)
Length = 237
Score = 147 bits (371), Expect = 2e-35
Identities = 70/79 (88%), Positives = 75/79 (94%)
Frame = +1
Query: 320 DPRKVSEAVILKTLSYQEAWEMSYFGANVLHPRTIIPVMQYGIPILIRNIFNLSAPGTKI 379
DPRKVSEAVILKTLSYQEAWEMSYFGANVLHPRTIIPVM+YGIPILIRNIFNLSAPGTKI
Sbjct: 1 DPRKVSEAVILKTLSYQEAWEMSYFGANVLHPRTIIPVMRYGIPILIRNIFNLSAPGTKI 180
Query: 380 CHPSVNDNEDMMNVKNFVK 398
CHP V+D ED N++N+VK
Sbjct: 181 CHPVVSDYEDKSNLQNYVK 237
>BF632875 similar to PIR|T06242|T062 aspartate kinase (EC 2.7.2.4) /
homoserine dehydrogenase (EC 1.1.1.3) precursor -
soybean, partial (2%)
Length = 355
Score = 84.0 bits (206), Expect = 2e-16
Identities = 53/98 (54%), Positives = 65/98 (66%), Gaps = 2/98 (2%)
Frame = +1
Query: 1 MASLSASSLYHFSTISPSNNTPDIT-KI-SQCQCLPFLPSHRSHSLRKALSLLPRGNQSP 58
MAS +SSL HFS IS ++ D KI + QC FL S R HSLRK ++L PR +SP
Sbjct: 85 MASSLSSSLSHFSRISVTSLQHDYNNKIPADSQCRHFLLSRRFHSLRKGITL-PRRRESP 261
Query: 59 STKISASLTDVSPSVLVEEQQLQKGETWSVHKFGGTCM 96
S+ I ASLT VEE++L KG++WSVHKFGGTCM
Sbjct: 262 SSGICASLT-------VEEKELSKGDSWSVHKFGGTCM 354
>TC87100 homologue to GP|9293891|dbj|BAB01794.1 contains similarity to
uridylate kinase~gene_id:MVE11.4 {Arabidopsis thaliana},
partial (58%)
Length = 891
Score = 37.0 bits (84), Expect = 0.034
Identities = 19/47 (40%), Positives = 30/47 (63%)
Frame = +2
Query: 291 SDFSAAIMGALFRARQVTIWTDVDGVYSADPRKVSEAVILKTLSYQE 337
+D +AA+ A A V T+VDGV+ DP++ +A +L TL+YQ+
Sbjct: 710 TDTAAALRCAEINAEVVLKATNVDGVFDDDPKRNPQARLLDTLTYQD 850
>TC90992 similar to PIR|F86242|F86242 unknown protein 98896-95855
[imported] - Arabidopsis thaliana, partial (14%)
Length = 763
Score = 33.9 bits (76), Expect = 0.29
Identities = 24/110 (21%), Positives = 50/110 (44%), Gaps = 7/110 (6%)
Frame = +1
Query: 41 SHSLRKALSLLPRGNQSPSTKISASLTDVSPSVLVEEQQLQKGETWSVHKFGGTCMGSSQ 100
S+S RK+ S+ PRG +SPST + + Q+ + HK + +GS +
Sbjct: 355 SYSRRKSRSISPRGRRSPSTTTWRRRSRSPTAKRYRRQRSRSSSLSPAHKSSSSSLGSVE 534
Query: 101 RIKNVGDIVLEDDSER-------KLVVVSAMSKVTDMMYELINKAQSRDE 143
+ + E++ +R KL+ +V + + + ++++ S +E
Sbjct: 535 QKTAIEKQRKEEEKKRRQQEAELKLIAEETAKRVEEAIRKRVDESLSSEE 684
>BG587776 weakly similar to PIR|F86242|F86 unknown protein 98896-95855
[imported] - Arabidopsis thaliana, partial (23%)
Length = 608
Score = 33.1 bits (74), Expect = 0.50
Identities = 26/116 (22%), Positives = 52/116 (44%), Gaps = 7/116 (6%)
Frame = +2
Query: 35 FLPSHRSHSLRKALSLLPRGNQSPSTKISASLTDVSPSVLVEEQQLQKGETWSVHKFGGT 94
F+ SHR RK+ S+ PRG +SPST + + Q+ + HK +
Sbjct: 38 FVLSHR----RKSRSISPRGRRSPSTTTWRRRSRSPTAKRYRRQRSRSSSLSPAHKSSSS 205
Query: 95 CMGSSQRIKNVGDIVLEDDSER-------KLVVVSAMSKVTDMMYELINKAQSRDE 143
+GS ++ + E++ +R KL+ +V + + + ++++ S +E
Sbjct: 206 SLGSVEQKTAIEKQRKEEEKKRRQQEAELKLIAEETAKRVEEAIRKRVDESLSSEE 373
>TC89482 similar to SP|Q9M3H5|AHM1_ARATH Potential cadmium/zinc-transporting
ATPase HMA1 (EC 3.6.3.3) (EC 3.6.3.5). [Mouse-ear
cress], partial (41%)
Length = 1100
Score = 30.0 bits (66), Expect = 4.2
Identities = 22/77 (28%), Positives = 35/77 (44%)
Frame = +3
Query: 397 VKGFATIDNLALINVEGTGMAGVPGTASAIFGAVKDVGANVIMISQASSEHSICFAVPEK 456
+KG +D LA + G T +F A++ V + I ++ S+ S C EK
Sbjct: 114 LKGGHVLDALASCHTIAFDKTGTLTTGGLVFKAIEPVYGHHIR-NKESNISSCCVPTCEK 290
Query: 457 EVKAVAEALQSRFRHAL 473
E AVA A++ H +
Sbjct: 291 EALAVAAAMEKGTTHPI 341
>TC76514 homologue to PIR|T09648|T09648 nucleolin homolog nuM1 - alfalfa,
partial (61%)
Length = 1288
Score = 29.3 bits (64), Expect = 7.2
Identities = 34/135 (25%), Positives = 55/135 (40%), Gaps = 10/135 (7%)
Frame = +3
Query: 27 ISQCQCLPFLPSHRSHSLRKALSLLPRGNQSPSTKISASLTDVSPSVLVEEQQLQKGE-- 84
+SQ Q LP H S L ++P+ ++ +TK+ A+ VSP ++ + Q E
Sbjct: 30 LSQPQGFEQLPPHPPISHSSLLFIMPKSSKKSATKVDAAPVVVSPVKSGKKGKRQAEEEV 209
Query: 85 -TWSVHKFGGTCMGSSQRIKNV-------GDIVLEDDSERKLVVVSAMSKVTDMMYELIN 136
S K + + Q+ V + E + E+ +V A SK T +
Sbjct: 210 KAVSAKKQKVEEVAAKQKALKVVKKEESSSEESSESEDEQPVVKAPAPSKKTPAKKGNVK 389
Query: 137 KAQSRDESYVSSLDA 151
KAQ S S D+
Sbjct: 390 KAQPETTSEESDSDS 434
>TC87729 similar to GP|9759461|dbj|BAB10377.1 gene_id:MAF19.15~unknown protein
{Arabidopsis thaliana}, partial (37%)
Length = 2210
Score = 29.3 bits (64), Expect = 7.2
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +1
Query: 33 LPFLPSHRSHSLRKALSLLPRGNQSPSTKISASLTDVSPSVLVEEQQLQKGET 85
+ F+PS S + + L+ + Q + KI +TD+ P EE++ + +T
Sbjct: 1138 MKFMPSSLSSNSHRLLTAIVDSRQRKAVKIKNCVTDIDPEREKEEKEKAESQT 1296
>BG448933 similar to PIR|T09648|T09 nucleolin homolog nuM1 - alfalfa, partial
(29%)
Length = 663
Score = 29.3 bits (64), Expect = 7.2
Identities = 34/135 (25%), Positives = 55/135 (40%), Gaps = 10/135 (7%)
Frame = +2
Query: 27 ISQCQCLPFLPSHRSHSLRKALSLLPRGNQSPSTKISASLTDVSPSVLVEEQQLQKGE-- 84
+SQ Q LP H S L ++P+ ++ +TK+ A+ VSP ++ + Q E
Sbjct: 8 LSQPQGFEQLPPHPPISHSSLLFIMPKSSKKSATKVDAAPVVVSPVKSGKKGKRQAEEEV 187
Query: 85 -TWSVHKFGGTCMGSSQRIKNV-------GDIVLEDDSERKLVVVSAMSKVTDMMYELIN 136
S K + + Q+ V + E + E+ +V A SK T +
Sbjct: 188 KAVSAKKQKVEEVAAKQKALKVVKKEESSSEESSESEDEQPVVKAPAPSKKTPAKKGNVK 367
Query: 137 KAQSRDESYVSSLDA 151
KAQ S S D+
Sbjct: 368 KAQPETTSEESDSDS 412
>AW560816 similar to GP|9759433|dbj gene_id:MQD22.4~pir||T06699~similar to
unknown protein {Arabidopsis thaliana}, partial (19%)
Length = 568
Score = 29.3 bits (64), Expect = 7.2
Identities = 12/18 (66%), Positives = 15/18 (82%)
Frame = -2
Query: 48 LSLLPRGNQSPSTKISAS 65
L++ PRGNQSPS K +AS
Sbjct: 231 LAIAPRGNQSPSAKFTAS 178
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.318 0.134 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,440,970
Number of Sequences: 36976
Number of extensions: 309561
Number of successful extensions: 1515
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1509
length of query: 915
length of database: 9,014,727
effective HSP length: 105
effective length of query: 810
effective length of database: 5,132,247
effective search space: 4157120070
effective search space used: 4157120070
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Lotus: description of TM0108.1