TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0106.7.5
         (63 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC87745 similar to PIR|F84452|F84452 probable nonsense-mediated ...    84  8e-18
TC80680 similar to GP|14517540|gb|AAK62660.1 AT3g50910/F18B3_190...    26  2.7

>TC87745 similar to PIR|F84452|F84452 probable nonsense-mediated mRNA decay
            protein [imported] - Arabidopsis thaliana, partial (77%)
          Length = 1902

 Score = 84.3 bits (207), Expect = 8e-18
 Identities = 43/66 (65%), Positives = 51/66 (77%), Gaps = 5/66 (7%)
 Frame = +2

Query: 2    FLNDLEENPDLRFNLSLYQNIEFQPSEMASVTDGEELPSVPLEELLA-----DLELGEDE 56
            FL +LEENP+LRFN+SLYQN ++QPSE+ASVTDGEE PSVP +ELL      DL  GE +
Sbjct: 1436 FLKELEENPELRFNISLYQNKDYQPSEVASVTDGEEAPSVPWDELLTGLEDLDLSEGEGD 1615

Query: 57   DEEDFM 62
            D ED M
Sbjct: 1616 DGEDNM 1633


>TC80680 similar to GP|14517540|gb|AAK62660.1 AT3g50910/F18B3_190 {Arabidopsis
            thaliana}, partial (33%)
          Length = 1548

 Score = 26.2 bits (56), Expect = 2.7
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +2

Query: 26   PSEMASVTDGEELPSVPLEELLADL 50
            P+++ +V +GE+L S P+E+L   L
Sbjct: 1241 PADLTAVAEGEQLNSDPVEDLCQQL 1315


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.310    0.135    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,401,203
Number of Sequences: 36976
Number of extensions: 12991
Number of successful extensions: 50
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of query: 63
length of database: 9,014,727
effective HSP length: 39
effective length of query: 24
effective length of database: 7,572,663
effective search space: 181743912
effective search space used: 181743912
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 51 (24.3 bits)