TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0106.15
         (120 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC78136 similar to GP|22652297|gb|AAN03675.1 putative nucleopori...    34  0.015
TC79840 similar to PIR|A86211|A86211 hypothetical protein [impor...    28  0.82
TC77994 weakly similar to PIR|T39903|T39903 serine-rich protein ...    26  3.1
TC88332 similar to GP|10177796|dbj|BAB11287. gb|AAF31027.1~gene_...    26  4.1
TC80260 similar to GP|5059352|gb|AAD38983.1| syntaxin of plants ...    26  4.1
TC81249 similar to GP|14517556|gb|AAK62668.1 AT3g61710/F15G16_10...    25  5.3
TC77681 similar to GP|22597156|gb|AAN03465.1 nucleolar histone d...    25  5.3
TC83757 similar to GP|10177454|dbj|BAB10845. contains similarity...    25  6.9
BE248096 similar to GP|20160913|dbj contains EST C28023(C53723)~...    25  6.9
TC76535 similar to SP|Q9BBN6|YCF1_LOTJA Hypothetical 214.8 kDa p...    25  6.9

>TC78136 similar to GP|22652297|gb|AAN03675.1 putative nucleoporin PRECOZ
           {Arabidopsis thaliana}, partial (48%)
          Length = 2532

 Score = 33.9 bits (76), Expect = 0.015
 Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 14/96 (14%)
 Frame = +3

Query: 13  AEGDHIKVDRVKEVDNEVDD-------MKEWGHILKED-----EDLMNAIDDMNALSHVV 60
           A+ +   ++ +KEVDN+VD          E+ + ++E      ++ +++++D + L HV 
Sbjct: 606 ADNEEDMMEDIKEVDNDVDQEALPLIRRAEFSYWMRESVSYHVQNQISSLNDSHYLQHVF 785

Query: 61  MKFQNRQVFDWAQLVGKNNDFVVIMIRSDYG--TLN 94
                RQ+ +  QL   N D  +  + S  G  TLN
Sbjct: 786 TLLTGRQLDEAVQLAVSNGDVRLACLLSQAGGSTLN 893


>TC79840 similar to PIR|A86211|A86211 hypothetical protein [imported] -
           Arabidopsis thaliana, partial (22%)
          Length = 841

 Score = 28.1 bits (61), Expect = 0.82
 Identities = 17/61 (27%), Positives = 30/61 (48%), Gaps = 9/61 (14%)
 Frame = +1

Query: 1   MSHVLIEKVD---------NVAEGDHIKVDRVKEVDNEVDDMKEWGHILKEDEDLMNAID 51
           M   L EKVD          +  G H  +++ ++   E   + +W H LKE+ ++M+ ID
Sbjct: 193 MHGYLTEKVDVYSFGVVALEIVSGKHNTMNKPRD---ECFSLVDWVHFLKEEGNIMDLID 363

Query: 52  D 52
           +
Sbjct: 364 E 366


>TC77994 weakly similar to PIR|T39903|T39903 serine-rich protein - fission
            yeast (Schizosaccharomyces pombe), partial (5%)
          Length = 1571

 Score = 26.2 bits (56), Expect = 3.1
 Identities = 21/84 (25%), Positives = 34/84 (40%)
 Frame = -1

Query: 20   VDRVKEVDNEVDDMKEWGHILKEDEDLMNAIDDMNALSHVVMKFQNRQVFDWAQLVGKNN 79
            V++ KE +NE     +W     EDED +                + ++  DW + VG + 
Sbjct: 1379 VEKAKECENE-----DWP---PEDEDEVEK----------ERSEERKRAEDWKKTVGGSR 1254

Query: 80   DFVVIMIRSDYGTLNGKESLTLGC 103
            DF   M+R+       +    LGC
Sbjct: 1253 DFYYFMLRASMIRAEIRAEGLLGC 1182


>TC88332 similar to GP|10177796|dbj|BAB11287.
           gb|AAF31027.1~gene_id:MXA21.11~strong similarity to
           unknown protein {Arabidopsis thaliana}, partial (57%)
          Length = 698

 Score = 25.8 bits (55), Expect = 4.1
 Identities = 12/38 (31%), Positives = 19/38 (49%)
 Frame = +3

Query: 51  DDMNALSHVVMKFQNRQVFDWAQLVGKNNDFVVIMIRS 88
           DD +   HV+   +N  +FDW +   KN     I++ S
Sbjct: 540 DDYDGHRHVIKVVKNTPLFDWFKDSLKNEGMDEILVNS 653


>TC80260 similar to GP|5059352|gb|AAD38983.1| syntaxin of plants 42
           {Arabidopsis thaliana}, partial (83%)
          Length = 995

 Score = 25.8 bits (55), Expect = 4.1
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = +2

Query: 7   EKVDNVAEGDHIKVDRVKEVDNEVDDMKEWGHILKE 42
           E++  + + +HI  +R +E+D     + E   I+K+
Sbjct: 782 EQMTKLKKNEHISAEREREIDQVAKSVHELAQIMKD 889


>TC81249 similar to GP|14517556|gb|AAK62668.1 AT3g61710/F15G16_100
           {Arabidopsis thaliana}, partial (41%)
          Length = 813

 Score = 25.4 bits (54), Expect = 5.3
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +1

Query: 81  FVVIMIRSDYGTLNGKESLTLGCEHGGKFKPYKGKFD 117
           FVV+          G  SL+ G +HGG   P+   F+
Sbjct: 316 FVVVYKSESASDGGGGNSLSPGVDHGGHLPPHNSGFN 426


>TC77681 similar to GP|22597156|gb|AAN03465.1 nucleolar histone deacetylase
           HD2-P39 {Glycine max}, partial (47%)
          Length = 1233

 Score = 25.4 bits (54), Expect = 5.3
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 11  NVAEGDHIKVDRVKEVDNEVDDMKEWGHILKEDEDLMNAIDD 52
           N A   H+KV   K+ D++ DD  +   I   D+++ NA  D
Sbjct: 527 NAATAKHVKVVDPKDEDSDDDDESD-DEIGSSDDEMENADSD 649


>TC83757 similar to GP|10177454|dbj|BAB10845. contains similarity to nuclear
           protein ZAP~gene_id:MQB2.8 {Arabidopsis thaliana},
           partial (10%)
          Length = 995

 Score = 25.0 bits (53), Expect = 6.9
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +3

Query: 15  GDHIKVDRVKEVDNEVDD 32
           GD +K  R++EVD ++DD
Sbjct: 705 GDDLKESRIQEVDMDMDD 758


>BE248096 similar to GP|20160913|dbj contains EST C28023(C53723)~similar to
           sperm protein homolog~unknown protein, partial (49%)
          Length = 318

 Score = 25.0 bits (53), Expect = 6.9
 Identities = 18/59 (30%), Positives = 28/59 (46%), Gaps = 1/59 (1%)
 Frame = +3

Query: 52  DMNALSH-VVMKFQNRQVFDWAQLVGKNNDFVVIMIRSDYGTLNGKESLTLGCEHGGKF 109
           + N+L H +++++   Q+FD    V   +DFV    RS+    N   S     E G KF
Sbjct: 42  EANSLIHSLIIRYTPEQLFDVVAAVDYYHDFVPWCQRSEIVKRNPDGSFDAELEIGFKF 218


>TC76535 similar to SP|Q9BBN6|YCF1_LOTJA Hypothetical 214.8 kDa protein ycf1.
            {Lotus japonicus}, partial (16%)
          Length = 1658

 Score = 25.0 bits (53), Expect = 6.9
 Identities = 11/42 (26%), Positives = 24/42 (56%), Gaps = 3/42 (7%)
 Frame = +3

Query: 10   DNVAEGDHIKVDRVK---EVDNEVDDMKEWGHILKEDEDLMN 48
            D + E D  + D +    E+D E+D  +E    ++++ED+++
Sbjct: 993  DEILEYDEKQKDEINGETEIDVEIDSEQEQNGSIEDEEDILS 1118


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.319    0.139    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,945,808
Number of Sequences: 36976
Number of extensions: 29508
Number of successful extensions: 129
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of query: 120
length of database: 9,014,727
effective HSP length: 84
effective length of query: 36
effective length of database: 5,908,743
effective search space: 212714748
effective search space used: 212714748
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)