TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0102b.4
         (278 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC78549 similar to GP|15027268|emb|CAC44902. replication licensi...    31  0.46
TC86791 similar to GP|9828617|gb|AAG00240.1| F1N21.15 {Arabidops...    28  3.9
BQ148893 similar to GP|19578315|emb transcription factor E2Fe {A...    27  6.6
TC86890 weakly similar to GP|4406801|gb|AAD20110.1| unknown prot...    27  6.6
BG450549 similar to GP|19578315|emb transcription factor E2Fe {A...    27  6.6

>TC78549 similar to GP|15027268|emb|CAC44902. replication licensing factor
            MCM7 homologue {Zea mays}, partial (73%)
          Length = 1900

 Score = 31.2 bits (69), Expect = 0.46
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 197  NCCCREESSVEDDVFSGWSLNGV 219
            NCCC E S  + D F GWS+  +
Sbjct: 1251 NCCCSERSGDK*DGFRGWSIGAI 1319


>TC86791 similar to GP|9828617|gb|AAG00240.1| F1N21.15 {Arabidopsis thaliana},
            partial (70%)
          Length = 1157

 Score = 28.1 bits (61), Expect = 3.9
 Identities = 15/54 (27%), Positives = 30/54 (54%)
 Frame = +2

Query: 159  LLVRTTTLNFITLARKILIKGTTYTISIIEEGEALLHPNCCCREESSVEDDVFS 212
            +++    L F+  A  ILI  + +++ +I++     + +CCCRE S V   ++S
Sbjct: 953  VMILLLVLVFVN*ALIILIMASDFSLFLIKDEWW**YKHCCCRE*SVVPLQIYS 1114


>BQ148893 similar to GP|19578315|emb transcription factor E2Fe {Arabidopsis
           thaliana}, partial (17%)
          Length = 545

 Score = 27.3 bits (59), Expect = 6.6
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +2

Query: 224 ELSESGGEDDDGLWPVETKSQHDLQGSPNHSLGDNKNPRS 263
           ++  S  ED+D L    T SQ +    P  S  DN NP S
Sbjct: 53  DVKVSDEEDEDELLSQTTGSQGESLSQPTGSQNDNLNPNS 172


>TC86890 weakly similar to GP|4406801|gb|AAD20110.1| unknown protein
            {Arabidopsis thaliana}, partial (54%)
          Length = 2446

 Score = 27.3 bits (59), Expect = 6.6
 Identities = 17/67 (25%), Positives = 27/67 (39%)
 Frame = +3

Query: 212  SGWSLNGVTVTPELSESGGEDDDGLWPVETKSQHDLQGSPNHSLGDNKNPRSNTGAVNRL 271
            S + +NG     E  E  G  ++GL  +       +    +HS  D+ N   N   V  +
Sbjct: 1887 SDFLINGYNEDLEYVEESGNSEEGLGMMHMARGSTITNGDSHSHSDHANGNGNGHVVINV 2066

Query: 272  LSSRLNS 278
             S+  NS
Sbjct: 2067 DSNSTNS 2087


>BG450549 similar to GP|19578315|emb transcription factor E2Fe {Arabidopsis
           thaliana}, partial (25%)
          Length = 679

 Score = 27.3 bits (59), Expect = 6.6
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +2

Query: 224 ELSESGGEDDDGLWPVETKSQHDLQGSPNHSLGDNKNPRS 263
           ++  S  ED+D L    T SQ +    P  S  DN NP S
Sbjct: 113 DVKVSDEEDEDELLSQTTGSQGESLSQPTGSQNDNLNPNS 232


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.317    0.135    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,753,151
Number of Sequences: 36976
Number of extensions: 145180
Number of successful extensions: 781
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of query: 278
length of database: 9,014,727
effective HSP length: 95
effective length of query: 183
effective length of database: 5,502,007
effective search space: 1006867281
effective search space used: 1006867281
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)