BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0102a.7
(1496 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC86737 weakly similar to GP|6683624|dbj|BAA89272.1 Pol {Alterna... 292 8e-79
BG644693 weakly similar to GP|18767374|g Putative 22 kDa kafirin... 227 3e-59
BG586326 similar to PIR|G84493|G8 probable retroelement pol poly... 225 9e-59
BF003873 similar to GP|14715222|em putative polyprotein {Cicer a... 182 1e-45
TC77595 weakly similar to PIR|T18350|T18350 probable pol polypro... 176 6e-44
BG587145 similar to PIR|H86337|H8 protein F5M15.26 [imported] - ... 99 3e-32
TC93153 similar to GP|14715220|emb|CAC44106. gag polyprotein {Ci... 117 3e-26
BG454871 weakly similar to GP|10140673|g putative gag-pol polypr... 74 3e-17
BG644740 similar to PIR|A84460|A84 probable retroelement pol pol... 87 6e-17
BG644699 similar to PIR|T07863|T078 probable polyprotein - pinea... 69 1e-11
BG587101 similar to GP|6691191|gb F7F22.15 {Arabidopsis thaliana... 57 5e-08
AL366725 57 7e-08
TC87383 similar to GP|19168656|emb|CAD26175. DNA-DIRECTED RNA PO... 53 1e-06
BG452991 PIR|A25875|A25 histone H4 - Tetrahymena thermophila, pa... 45 3e-06
BG587176 weakly similar to PIR|G84493|G84 probable retroelement ... 49 2e-05
TC87382 similar to EGAD|146423|156195 vitellogenin {Anolis pulch... 47 4e-05
BG647713 homologue to GP|15042313|gb| 232R {Chilo iridescent vir... 46 1e-04
TC88387 similar to GP|13357253|gb|AAK20050.1 putative zinc finge... 45 2e-04
BG644733 weakly similar to GP|15289942|db putative polyprotein {... 45 3e-04
CA860311 weakly similar to GP|7289872|gb|A CG17427 gene product ... 44 4e-04
>TC86737 weakly similar to GP|6683624|dbj|BAA89272.1 Pol {Alternaria
alternata}, partial (21%)
Length = 1540
Score = 292 bits (747), Expect = 8e-79
Identities = 167/395 (42%), Positives = 238/395 (59%), Gaps = 14/395 (3%)
Frame = +1
Query: 534 VVQEFEDVF-PEDVPGIPPVRDM-EFTIDIVPGTG----PISIAP-YRMAPAELTELKSQ 586
V++EF D+F PE +P R + + I ++P P+ P Y M+ EL LK
Sbjct: 343 VLEEFPDLFNPEKAYQVPASRGLLDHAIPLIPDKDGNDPPLPWGPLYGMSRQELLVLKKT 522
Query: 587 LEDLTKKGFIRPSVSPWGAPVLLVKKKDGRSRLCVDYRQLNKVTIKNCYPLPRIDDLMDQ 646
LEDL KGFI+ S S GAPVL V+K G R CVDYR LN +T K+ YPLP I + + +
Sbjct: 523 LEDLLDKGFIKASGSAAGAPVLFVRKPGGGIRFCVDYRALNAITKKDRYPLPLISETLRR 702
Query: 647 LKGAAIFSKIDLRSGYHQIRVKDEDIQKTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNR 706
+ GA F+K+D+ + +H++R+KDED +KTAFRTRYG +E++V PFG+T APA F Y+N+
Sbjct: 703 VAGARWFTKLDVVAAFHKMRIKDEDQEKTAFRTRYGLFEWIVCPFGLTGAPATFQRYINK 882
Query: 707 IFHPFLDRFVVVFIDDILIYSR-NLEEHEEHLRQVLQVLREKVLYANAAKCEFWLEEVKF 765
H FLD FV +IDD+LIY+ + ++HE +R+VL+ L + L + KCEF + VK+
Sbjct: 883 TLHEFLDDFVTAYIDDVLIYTTGSKKDHEAQVRRVLRRLADAGLSLDPKKCEFSVTTVKY 1062
Query: 766 LGHVISK-EGIAVDPSKVETVLAWDRPKTVTDIRSFIGLAGYYRRFIEGFAKIAGPLTKL 824
+G +++ +G++ DP K+ + W P +V RSF+G YY+ FI G+++I PLT+L
Sbjct: 1063VGFILTAGKGVSCDPLKLAAIRDWLPPGSVKGARSFLGFCNYYKDFIPGYSEITEPLTRL 1242
Query: 825 TRKNQPFAWTEDCEQSFQDMKERLTTAPVLTLPQEEEPYEVYCDASYQGLGCVLMQH--- 881
TRK+ PF W + E +F +K PVL + E V D S LG VL Q
Sbjct: 1243TRKDFPFRWGAEQEAAFTKLKRLFAEEPVLRMFDPEAVTTVETDCSGFALGGVLTQEDGT 1422
Query: 882 --RKAVAYSSRQLKIHERNYPTHDLELAAVVFALK 914
VA+ S++L E NYP HD EL AV L+
Sbjct: 1423GAAHPVAFHSQRLSPAEYNYPIHDKELLAVWACLR 1527
>BG644693 weakly similar to GP|18767374|g Putative 22 kDa kafirin cluster;
Ty3-Gypsy type {Oryza sativa}, partial (15%)
Length = 716
Score = 227 bits (578), Expect = 3e-59
Identities = 126/238 (52%), Positives = 156/238 (64%), Gaps = 5/238 (2%)
Frame = +2
Query: 549 IPPVRDMEFTIDIVPGTGPISIAPYRMAPAELTELKSQLEDLTKKGFIRPSVSPWGAPVL 608
+PP ++F ID++P PI I YR+ P +L LK QL+DL +KGFI+PS+ P G VL
Sbjct: 17 VPPEWKIDFGIDLLPNMNPI*IPSYRINPLKLKVLKLQLKDLLEKGFIQPSIYP*GVVVL 196
Query: 609 LVKKKDGRSRLCVDYRQLNKVTIKNCYPLPRIDDLMDQLKGAAIFSKIDLRSGYHQIRVK 668
+KKKDG R+ +DY QLN V IK YPLP ID+L D L+G+ F KIDLR G HQ RV
Sbjct: 197 FLKKKDGFLRMSIDYPQLNNVNIKIKYPLPLIDELFDNLQGSKWFFKIDLRLG*HQHRVI 376
Query: 669 DEDIQKTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHPFLDRFVVVFIDDILIYSR 728
ED+ KTAFR RYGHYE LVM FG TN P FM+ MNR+F +LD V+VF +DILIYS+
Sbjct: 377 GEDVPKTAFRIRYGHYEILVMSFG*TNPPMAFMELMNRVFQDYLDSLVIVFSNDILIYSK 556
Query: 729 NLEEHEEHLRQVLQVLREKVLYANAAKCEF----WLEEVKFLG-HVISKEGIAVDPSK 781
N EHE HLR L+VL++ L C+ L EV F HVIS EG+ VD +
Sbjct: 557 NENEHENHLRLALKVLKDIGL------CQISYV*ILVEVGFFSLHVISGEGLKVDSKR 712
>BG586326 similar to PIR|G84493|G8 probable retroelement pol polyprotein
[imported] - Arabidopsis thaliana, partial (13%)
Length = 736
Score = 225 bits (574), Expect = 9e-59
Identities = 120/246 (48%), Positives = 159/246 (63%), Gaps = 1/246 (0%)
Frame = +2
Query: 849 TTAPVLTLPQEEEPYEVYCDASYQGLGCVLMQHRKAVAYSSRQLKIHERNYPTHDLELAA 908
T+AP+L LP E Y VY DAS GLGCVL QH K +AY+SRQL+ HE NYPTHDLE+AA
Sbjct: 8 TSAPILVLP-ELITYVVYTDASITGLGCVLTQHEKVIAYASRQLRKHEGNYPTHDLEMAA 184
Query: 909 VVFALKIWRHYLYGSTFTVFSDHKSLKYLFDQKDLNMRQRRWMEFIKDYDFTLLYHPGKA 968
VVFALKIWR YLYG+ + +DHKSLKY+F Q +LN+RQRRWMEF+ DYD + Y+PGKA
Sbjct: 185 VVFALKIWRSYLYGAKVQIHTDHKSLKYIFTQPELNLRQRRWMEFVADYDLDITYYPGKA 364
Query: 969 NVVADALSRQTIHVSSLMIKELELIETFRDLSLGMQVTPGKLSFGMVTIT-SDFLNEIKV 1027
N+VADALSR+ + VS+ + +L R L L + +T S G+ + +D I++
Sbjct: 365 NLVADALSRRRVDVSAEREAD-DLDGMVRALRLNV-LTKATESLGLEAVNQADLFTRIRL 538
Query: 1028 KQLLDEELIEKRNLIILGKAPDFEVGTDNILRCKGRVCVPLDMELRRMILDEGHKSRLSI 1087
Q DE L + +++ D + GR+ VP D L+ I+ E HKSR S+
Sbjct: 539 AQGQDENL----QKVAQNDRTEYQTAKDGTILVNGRISVPNDRSLKEEIMSEAHKSRFSV 706
Query: 1088 HPGSTK 1093
HPG+ +
Sbjct: 707 HPGAPR 724
>BF003873 similar to GP|14715222|em putative polyprotein {Cicer arietinum},
partial (82%)
Length = 559
Score = 182 bits (461), Expect = 1e-45
Identities = 81/125 (64%), Positives = 105/125 (83%), Gaps = 1/125 (0%)
Frame = +2
Query: 1370 GVGRAIKSRKLTPKFIGPYQIIERVGKVAYRIALPPFLSKIHDVLHVSQLRKYIPDPSHI 1429
GVGRA+KS+KLT +FIGPYQI ERVG VAYR+ LPP L +HDV HVSQLRKY+PDPSH+
Sbjct: 2 GVGRALKSKKLTVRFIGPYQISERVGTVAYRVGLPPHLLNLHDVFHVSQLRKYVPDPSHV 181
Query: 1430 IKEDDIQLRDNLSFEVAPMRIEERRIKQLRNKQVPLVKVIWNQVTGDA-TWELEEKMKEQ 1488
I+ DD+Q+RDNL+ E P+RI++R++K LR K++PLV+V+W++ G++ TWELE KM E
Sbjct: 182 IQSDDVQVRDNLTVETLPVRIDDRKVKTLRGKEIPLVRVVWDRANGESLTWELESKMVES 361
Query: 1489 YPELF 1493
YPELF
Sbjct: 362 YPELF 376
>TC77595 weakly similar to PIR|T18350|T18350 probable pol polyprotein - rice
blast fungus gypsy retroelement (fragment), partial (14%)
Length = 1708
Score = 176 bits (446), Expect = 6e-44
Identities = 138/448 (30%), Positives = 209/448 (45%), Gaps = 18/448 (4%)
Frame = +2
Query: 1058 LRCKGRVCVPLD-------MELRRMILDEGHKSRLSIHPGSTKMYQDLKLNFWWPGMKKN 1110
L +GR+ VP ELR ++ E H S + HPG + + F+WPG +
Sbjct: 104 LTFRGRIWVPGSDDEESPLNELRTKLVQESHDSTAAGHPGRNGTLEIVSRKFFWPGQSQT 283
Query: 1111 VAEYVAACLTCQKAKIEHQKPAGMLQSLDVPEWKWDSISMDFVVALPATRKRFDS-IWVI 1169
V +V C C I Q G L+ L VP +SMDF+ +LP TR R +WVI
Sbjct: 284 VRRFVRNCDVCGGIHIWRQAKRGFLKPLPVPNRLHSDLSMDFITSLPPTRGRGSQYLWVI 463
Query: 1170 VDRLTKSAHFIPVKTTFNVEALAKVYVAEIVRLHGVPSSIVSDRDPKFTSHFWKALHEAL 1229
VDRL+KS + T EA A+ +++ R HG+P SIVSDR + FW+
Sbjct: 464 VDRLSKSVT-LEEMDTMEAEACAQRFLSCHYRFHGMPQSIVSDRGSNWVGRFWREFCRLT 640
Query: 1230 GTKLRLSSAYHPQTDGQTERTIQSLEDLLRACVLDSQESWDELLPLIEFTYNNSFHASIG 1289
G LS++YHPQTDG TER Q ++ +LRA V SQ++W +LLP ++ N ++SIG
Sbjct: 641 GVTQLLSTSYHPQTDGGTERWNQEIQAVLRAYVCWSQDNWGDLLPTVQLALRNRHNSSIG 820
Query: 1290 MAPYEALYGRRCRTPLCWFQD-GEHLLVGPELVQQTTEKVKQ----IQEKMRTSQSRQKS 1344
P+ +G P+ +D G + G Q +++K IQ ++ +Q R ++
Sbjct: 821 ATPFFVEHGYHV-DPIPTVEDTGGVVSEGEAAAQLLVKRMKDVTGFIQAEIVAAQQRSEA 997
Query: 1345 YADTRRRELE-FEAGDHVFLRVTPTTGVGRAIKSRKLTPKFIGPYQIIERVGKVAYRIAL 1403
A+ RR + ++ GD V+L V+ + K L K Y++ V + +
Sbjct: 998 SANKRRCPADRYQVGDKVWLNVSNYKSPRPSKKLDWLHHK----YEVTRFVTPHVVELNV 1165
Query: 1404 PPFLSKIHDVLHVSQLRKYIPDPSHIIKEDDIQ----LRDNLSFEVAPMRIEERRIKQLR 1459
P ++ HV LR+ DP + D Q + D+ E I R Q+
Sbjct: 1166 P---GTVYPKFHVDLLRRAASDPLPGQEVVDPQPPPIVDDDGEVEWEVEEILAARWHQVG 1336
Query: 1460 NKQVPLVKVIWNQVTGDATWELEEKMKE 1487
+ V W DATWE + ++E
Sbjct: 1337 RGRRRQALVKWKGFV-DATWEAADAIRE 1417
>BG587145 similar to PIR|H86337|H8 protein F5M15.26 [imported] - Arabidopsis
thaliana, partial (13%)
Length = 763
Score = 98.6 bits (244), Expect(2) = 3e-32
Identities = 47/133 (35%), Positives = 80/133 (59%)
Frame = +2
Query: 670 EDIQKTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHPFLDRFVVVFIDDILIYSRN 729
+D++KTAF T G Y Y VMPFG+ NA + + +NR+F L + V+IDD+L+ S
Sbjct: 11 DDLEKTAFITDRGTYCYKVMPFGLKNAGSTYQRLVNRMFADKLGNTMEVYIDDMLVKSLR 190
Query: 730 LEEHEEHLRQVLQVLREKVLYANAAKCEFWLEEVKFLGHVISKEGIAVDPSKVETVLAWD 789
+H HL++ + L E ++ N AKC F + +FLG++++++GI V+P ++ +L
Sbjct: 191 ATDHLNHLKE*FKTLDEYIMKLNPAKCTFGVTSGEFLGYIVTQQGIEVNPKQITAILDLP 370
Query: 790 RPKTVTDIRSFIG 802
PK +++ G
Sbjct: 371 SPKNSREVQRLTG 409
Score = 60.1 bits (144), Expect(2) = 3e-32
Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Frame = +3
Query: 809 RFIEGFAKIAGPLTKLTRKNQPFAWTEDCEQSFQDMKERLTTAPVLTLPQEEEPYEVYCD 868
RFI P KL N+ F W E CE++F+ +K+ LTT PVL+ P+ + +Y
Sbjct: 429 RFISRSTDKCLPFYKLLCGNKRFVWDEKCEEAFEQLKQYLTTPPVLSKPEAGDTLSLYIA 608
Query: 869 ASYQGLGCVLMQ----HRKAVAYSSRQLKIHERNYPTHDLELAAVV 910
S + VL++ +K + Y+S+++ E YPT + AV+
Sbjct: 609 ISSTAVSSVLIREDRGEQKPIFYTSKRMTDPETRYPTLEKMAFAVI 746
>TC93153 similar to GP|14715220|emb|CAC44106. gag polyprotein {Cicer
arietinum}, partial (8%)
Length = 516
Score = 117 bits (293), Expect = 3e-26
Identities = 64/170 (37%), Positives = 93/170 (54%), Gaps = 1/170 (0%)
Frame = +2
Query: 33 AATAALVAAQNHAEENARRVQREEREQAAAQ-TRGLNDFKRQDPPKFSGGFDPEEADLWL 91
++ AALVAA E A+ VQ+ + + TR L F R PP F G + P+ A WL
Sbjct: 11 SSDAALVAA---LEAVAQAVQQLPKVDTGSDGTRMLETFLRNHPPTFKGRYAPDGA*KWL 181
Query: 92 QELEKIFTFLRTTAEMKVDYATYLLTGEAEYWWRGARAMMEADHQAITWECFRGAFLDKY 151
+E+E+IF ++ KV + T++L EA+ WW ++E D +TW FR FL +Y
Sbjct: 182 KEIERIFRVMQCFETQKVQFGTHMLAEEADDWWISLLPVLEQDDAVVTWAMFRKEFLGRY 361
Query: 152 FPKSARAAKEAQFLRLRQGGMTVAEYAYKLESLAKHFRYFRGQIDEGYMC 201
FP+ R KE +FL L+QG M+V EYA K LA + ++ + E C
Sbjct: 362 FPEDVRGKKEIEFLELKQGDMSVTEYAAKFVELATFYPHYSAETAEFSKC 511
>BG454871 weakly similar to GP|10140673|g putative gag-pol polyprotein {Oryza
sativa (japonica cultivar-group)}, partial (7%)
Length = 674
Score = 73.6 bits (179), Expect(2) = 3e-17
Identities = 35/81 (43%), Positives = 48/81 (59%)
Frame = +2
Query: 1219 SHFWKALHEALGTKLRLSSAYHPQTDGQTERTIQSLEDLLRACVLDSQESWDELLPLIEF 1278
S+FWK L + GT L +SSAYHP +DGQ+E + E LR + W + P E+
Sbjct: 32 SNFWKQLFKLHGTILTMSSAYHP*SDGQSEALNKGXEMYLRCLMFTDPLKWSKAFPWAEY 211
Query: 1279 TYNNSFHASIGMAPYEALYGR 1299
YN S++ S M P++ALYGR
Sbjct: 212 WYNTSYNISAAMTPFKALYGR 274
Score = 34.7 bits (78), Expect(2) = 3e-17
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +1
Query: 1338 SQSRQKSYADTRRRELEFEAGDHVFLRVTPTTGVGRAIKSRKL--TPKFIGPYQIIERVG 1395
+Q K AD +RR EF+ G+HV +++ P A++ + +P F +
Sbjct: 388 AQQTMKHQADKKRRHFEFQLGEHVLVKLQPYQQSSVALRKYQKFGSPNFGSLLTVCSL*V 567
Query: 1396 KVAYRIALPPFLS 1408
+ A+ PP+LS
Sbjct: 568 ESAFHCKSPPYLS 606
>BG644740 similar to PIR|A84460|A84 probable retroelement pol polyprotein
[imported] - Arabidopsis thaliana, partial (4%)
Length = 754
Score = 86.7 bits (213), Expect = 6e-17
Identities = 44/78 (56%), Positives = 56/78 (71%), Gaps = 4/78 (5%)
Frame = -1
Query: 588 EDLT----KKGFIRPSVSPWGAPVLLVKKKDGRSRLCVDYRQLNKVTIKNCYPLPRIDDL 643
+DLT +K F +PS+SP GA +L V+KKDG R+C+DYRQ NKVT KN YPLPRID+L
Sbjct: 301 KDLT*RFARKRFQQPSISP*GAALLFVRKKDGYFRMCIDYRQFNKVTTKNKYPLPRIDNL 122
Query: 644 MDQLKGAAIFSKIDLRSG 661
D+++ F IDLR G
Sbjct: 121 FDKIQEDCYF*NIDLRLG 68
>BG644699 similar to PIR|T07863|T078 probable polyprotein - pineapple
retrotransposon dea1 (fragment), partial (5%)
Length = 231
Score = 68.9 bits (167), Expect = 1e-11
Identities = 34/74 (45%), Positives = 52/74 (69%), Gaps = 1/74 (1%)
Frame = +2
Query: 1359 DHVFLRVTPTT-GVGRAIKSRKLTPKFIGPYQIIERVGKVAYRIALPPFLSKIHDVLHVS 1417
+ V L+V PT G R K KL+ ++IGP+++I+R+G+VAY +ALPP LS +H V HVS
Sbjct: 2 EQVLLKVLPTERGDCRFGKRGKLSLRYIGPFEVIKRIGEVAYELALPPGLSGVHPVFHVS 181
Query: 1418 QLRKYIPDPSHIIK 1431
++Y D ++II+
Sbjct: 182 MFKRYHGDGNYIIR 223
>BG587101 similar to GP|6691191|gb F7F22.15 {Arabidopsis thaliana}, partial
(10%)
Length = 624
Score = 57.0 bits (136), Expect = 5e-08
Identities = 49/193 (25%), Positives = 88/193 (45%), Gaps = 5/193 (2%)
Frame = +2
Query: 1055 DNI-LRCKGRVCVPLDMELRRMILDEGHKSRLSIHPGSTKMYQDLK-LNFWWPGMKKNVA 1112
DNI +RC +P IL H S + H +K ++ FWWP M K+
Sbjct: 59 DNIYIRCVAEEEIP-------GILFHCHGSNYAGHFAVSKTVSKIQQAGFWWPTMFKDAH 217
Query: 1113 EYVAACLTCQKA---KIEHQKPAGMLQSLDVPEWKWDSISMDFVVALPATRKRFDSIWVI 1169
+++ C CQ+ ++ P + ++V +D +DF+ P++ I V
Sbjct: 218 SFISKCDPCQRQGNIS*RNEMPQNFILEVEV----FDVWGIDFMGPFPSSYNN-KYILVA 382
Query: 1170 VDRLTKSAHFIPVKTTFNVEALAKVYVAEIVRLHGVPSSIVSDRDPKFTSHFWKALHEAL 1229
VD ++K I T + + K++ + I GVP ++SD F + ++ L +
Sbjct: 383 VDYVSKWVEAIASPTN-DATVVVKMFKSVIFPRFGVPRVVISDGGSHFINKVFEKLLKKN 559
Query: 1230 GTKLRLSSAYHPQ 1242
G + ++++AYHPQ
Sbjct: 560 GVRHKVATAYHPQ 598
>AL366725
Length = 485
Score = 56.6 bits (135), Expect = 7e-08
Identities = 39/171 (22%), Positives = 77/171 (44%), Gaps = 8/171 (4%)
Frame = +2
Query: 186 KHFRYFRGQIDEGYMCERFIDGLSYELQRAVQ-------PLGLNRYQVLVEKTKGIEAID 238
K + ++ + E C +F +GL +++RA+ P +N ++ E TK + +
Sbjct: 2 KFYPHYAAETAEFSKCIKFENGLRPDIKRAIGYQQLRVFPDLVNTCRIYEEDTKAHDKVV 181
Query: 239 NARGKFQGQNKLNQGSGGPARTNQGRGDKGRYFQKKPYVRPQGRGTASGSFYPTGENA-I 297
N R K +GQ + PA +G + ++P + ++ G + +
Sbjct: 182 NER-KTKGQ*SRPKPYSAPA----DKGKQRMVDDRRPKKKDAPAEIVCFNYGEKGHKSNV 346
Query: 298 APRPLGVSLDGVTCFKCNQKGHYASHCPEGPLMCWNCNKPGHLARDCRIPK 348
P+ + C +C++KGH + C ++C+NCN+ GH+ C+ PK
Sbjct: 347 CPKEIK------KCVRCDKKGHIVADCKRNDIVCFNCNEEGHIGSQCKQPK 481
>TC87383 similar to GP|19168656|emb|CAD26175. DNA-DIRECTED RNA POLYMERASE II
{Encephalitozoon cuniculi}, partial (0%)
Length = 1247
Score = 52.8 bits (125), Expect = 1e-06
Identities = 40/139 (28%), Positives = 57/139 (40%), Gaps = 2/139 (1%)
Frame = -2
Query: 17 QQVTNSAAREEAEAQRAATAALVAAQNHAEENARRVQREEREQAAAQTRGLNDFKRQDPP 76
Q++ N A + EAQ+ V++ + + R QR E + +ND K D P
Sbjct: 871 QEIVN-AQQALLEAQQKRFKDHVSSSDSLSSRSSRSQRREFQ--------MNDIK*-DIP 722
Query: 77 KFSGGFDPEEADLWLQELEKIFTFLRTTAEMKVDYATYLLTGEAEYWWRGA--RAMMEAD 134
F G P++ WLQ +E++F + E KV L A WW R E
Sbjct: 721 DFEGNLQPDDLLDWLQIMERLFKYKEVLEEQKVKIVAAKLKKLASIWWENVKRRRKREGK 542
Query: 135 HQAITWECFRGAFLDKYFP 153
+ TWE R KY P
Sbjct: 541 SKIKTWEKMRQKLTRKYLP 485
>BG452991 PIR|A25875|A25 histone H4 - Tetrahymena thermophila, partial (33%)
Length = 560
Score = 44.7 bits (104), Expect(3) = 3e-06
Identities = 24/72 (33%), Positives = 42/72 (58%)
Frame = +3
Query: 993 IETFRDLSLGMQVTPGKLSFGMVTITSDFLNEIKVKQLLDEELIEKRNLIILGKAPDFEV 1052
+E FRDLSL +V+P + GM+ I ++FL+ IK Q +D +L++ + DF+V
Sbjct: 69 LEQFRDLSLVCEVSPQSVKLGMLKINNEFLDSIKEAQKVDVKLVDLMFGNNQTEDGDFKV 248
Query: 1053 GTDNILRCKGRV 1064
+L+ + R+
Sbjct: 249 DDQGVLQFRDRI 284
Score = 24.3 bits (51), Expect(3) = 3e-06
Identities = 10/13 (76%), Positives = 12/13 (91%)
Frame = +1
Query: 970 VVADALSRQTIHV 982
VVAD LSR+T+HV
Sbjct: 1 VVADVLSRKTLHV 39
Score = 20.8 bits (42), Expect(3) = 3e-06
Identities = 6/15 (40%), Positives = 13/15 (86%)
Frame = +2
Query: 1072 LRRMILDEGHKSRLS 1086
+++MIL+E H+S ++
Sbjct: 284 MKKMILEESHRSNVN 328
>BG587176 weakly similar to PIR|G84493|G84 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(1%)
Length = 729
Score = 48.5 bits (114), Expect = 2e-05
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = -1
Query: 1441 LSFEVAPMRIEERRIKQLRNKQVPLVKVIWN-QVTGDATWELEEKMKEQYPELFTE 1495
L E P+RI +R K +R K + +VK++W+ + TWE E +MK YPE F +
Sbjct: 717 LDLETRPVRILDRMEKAMRKKPIQMVKIVWDCSGREEITWETEARMKADYPEWFNQ 550
>TC87382 similar to EGAD|146423|156195 vitellogenin {Anolis pulchellus},
partial (7%)
Length = 2304
Score = 47.4 bits (111), Expect = 4e-05
Identities = 37/129 (28%), Positives = 48/129 (36%), Gaps = 4/129 (3%)
Frame = +2
Query: 29 EAQRAATAALVAAQNHAEENARRVQREEREQAAAQTRGL--NDFKRQDPPKFSGGFDPEE 86
E A A L A Q E + + +Q R L ND K D P F G ++
Sbjct: 485 EIINAQQALLEAEQRRFEGDVSYSDSSSSRSSHSQRRQLQMNDIK-VDIPDFEGNLQLDD 661
Query: 87 ADLWLQELEKIFTFLRTTAEMKVDYATYLLTGEAEYWWRG--ARAMMEADHQAITWECFR 144
WLQ +E++F + E KV L A WW R E + TW+ R
Sbjct: 662 FLDWLQTIERVFEYKEVPEEQKVKIVAAKLKKHALIWWENLKRRRKREGKSKIKTWDKMR 841
Query: 145 GAFLDKYFP 153
KY P
Sbjct: 842 QKLTRKYLP 868
>BG647713 homologue to GP|15042313|gb| 232R {Chilo iridescent virus}, partial
(1%)
Length = 726
Score = 45.8 bits (107), Expect = 1e-04
Identities = 37/146 (25%), Positives = 55/146 (37%), Gaps = 11/146 (7%)
Frame = +2
Query: 17 QQVTNSAAREEAEAQRAATAALVAAQNHAEENARRVQREEREQA-AAQTRGLNDFKRQ-- 73
Q+ + EE Q V AQ E RR ++ + ++ +R +RQ
Sbjct: 143 QRPLHEIEMEEMRRQIQLLQETVNAQQALLEAQRRRNDDDGSGSDSSSSRSSRSHRRQTR 322
Query: 74 ------DPPKFSGGFDPEEADLWLQELEKIFTFLRTTAEMKVDYATYLLTGEAEYWWRGA 127
D P F G P+E WLQ +E++F + E KV L A WW+
Sbjct: 323 MSKIKVDIPDF*GKLQPDEFVDWLQTIERVFKYKEVAEEQKVKIVAAKLKKHASIWWKNL 502
Query: 128 RAM--MEADHQAITWECFRGAFLDKY 151
+ E + TW+ R KY
Sbjct: 503 KRKRNCEGKSKIKTWDKMRQKLTRKY 580
>TC88387 similar to GP|13357253|gb|AAK20050.1 putative zinc finger protein
{Oryza sativa (japonica cultivar-group)}, partial (96%)
Length = 1286
Score = 45.4 bits (106), Expect = 2e-04
Identities = 31/120 (25%), Positives = 53/120 (43%), Gaps = 1/120 (0%)
Frame = +1
Query: 226 VLVEKTKGIEAIDNARGKFQGQNKLNQGSGGPARTNQGRGDKGRYFQKKPYVRPQGRGTA 285
V V K + ++ +R K + ++ +++ + R ++ + ++ PY R RG +
Sbjct: 235 VEVGKILKMSSVSRSRSKSRSRSPMDRSRSRSPVDRRIRSERFSH-REAPYRRDSRRGFS 411
Query: 286 SGSFYPTGENAIAPRPLGVSLDGVT-CFKCNQKGHYASHCPEGPLMCWNCNKPGHLARDC 344
+ +N P V C C+ GH AS C L CWNC +PGH+A C
Sbjct: 412 QDNLC---KNCKRPGHYVRECPNVAVCHNCSLPGHIASECSTKSL-CWNCKEPGHMASSC 579
Score = 45.1 bits (105), Expect = 2e-04
Identities = 19/39 (48%), Positives = 25/39 (63%), Gaps = 1/39 (2%)
Frame = +1
Query: 311 CFKCNQKGHYASHCP-EGPLMCWNCNKPGHLARDCRIPK 348
C+ C + GH AS CP EG +C C K GH AR+C +P+
Sbjct: 538 CWNCKEPGHMASSCPNEG--ICHTCGKAGHRARECTVPQ 648
Score = 41.2 bits (95), Expect = 0.003
Identities = 22/49 (44%), Positives = 27/49 (54%)
Frame = +1
Query: 311 CFKCNQKGHYASHCPEGPLMCWNCNKPGHLARDCRIPKVEDAANVVGAR 359
C C + GH A CP P+ C CN GH+AR C PK +NV+G R
Sbjct: 730 CNNCRKTGHLARDCPNDPI-CNLCNISGHVARQC--PK----SNVIGDR 855
Score = 40.8 bits (94), Expect = 0.004
Identities = 25/60 (41%), Positives = 27/60 (44%), Gaps = 10/60 (16%)
Frame = +1
Query: 295 NAIAPRPLGVSLDG---------VTCFKCNQKGHYASHCPEGPLM-CWNCNKPGHLARDC 344
N I R G SL G V C C Q GH + C GPLM C NC GH A +C
Sbjct: 838 NVIGDRGGGGSLRGGYRDGGFRDVVCRSCQQFGHMSRDCMGGPLMICQNCGGRGHQAYEC 1017
Score = 40.4 bits (93), Expect = 0.005
Identities = 19/47 (40%), Positives = 24/47 (50%)
Frame = +1
Query: 311 CFKCNQKGHYASHCPEGPLMCWNCNKPGHLARDCRIPKVEDAANVVG 357
C C ++GH A C C NC K GHLARDC + + N+ G
Sbjct: 673 CNNCYKQGHIAVECTNEKA-CNNCRKTGHLARDCPNDPICNLCNISG 810
Score = 35.0 bits (79), Expect = 0.22
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
Frame = +1
Query: 311 CFKCNQKGHYASHC-----PEGPL-MCWNCNKPGHLARDC 344
C C + GH A C P G L +C NC K GH+A +C
Sbjct: 595 CHTCGKAGHRARECTVPQKPPGDLRLCNNCYKQGHIAVEC 714
Score = 30.4 bits (67), Expect = 5.4
Identities = 15/56 (26%), Positives = 22/56 (38%), Gaps = 22/56 (39%)
Frame = +1
Query: 311 CFKCNQKGHYASHCPEG----------------------PLMCWNCNKPGHLARDC 344
C CN GH A CP+ ++C +C + GH++RDC
Sbjct: 787 CNLCNISGHVARQCPKSNVIGDRGGGGSLRGGYRDGGFRDVVCRSCQQFGHMSRDC 954
>BG644733 weakly similar to GP|15289942|db putative polyprotein {Oryza sativa
(japonica cultivar-group)}, partial (1%)
Length = 174
Score = 44.7 bits (104), Expect = 3e-04
Identities = 21/43 (48%), Positives = 32/43 (73%)
Frame = -3
Query: 1161 KRFDSIWVIVDRLTKSAHFIPVKTTFNVEALAKVYVAEIVRLH 1203
K ++SI V+VDRLTKS FIP KT+++ + A++ + EIV +H
Sbjct: 130 KSYESI*VVVDRLTKSTLFIPFKTSYSAK*YARILLDEIVCIH 2
>CA860311 weakly similar to GP|7289872|gb|A CG17427 gene product {Drosophila
melanogaster}, partial (20%)
Length = 192
Score = 44.3 bits (103), Expect = 4e-04
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Frame = +1
Query: 873 GLGCVLMQ-----HRKAVAYSSRQLKIHERNYPTHDLELAAVVFALKIWRHYLYGSTF 925
G+G L Q H +AY+SR L ERNY + E A ++A++ +RHYL+G F
Sbjct: 13 GIGAGLSQKDEENHEHPIAYASRLLTAAERNYTVVERECLAAIWAIRNFRHYLHGPKF 186
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.321 0.137 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,863,946
Number of Sequences: 36976
Number of extensions: 604380
Number of successful extensions: 2904
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 2812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2882
length of query: 1496
length of database: 9,014,727
effective HSP length: 109
effective length of query: 1387
effective length of database: 4,984,343
effective search space: 6913283741
effective search space used: 6913283741
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)
Lotus: description of TM0102a.7