BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0101.5
(967 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG644690 weakly similar to GP|18542179|gb putative pol protein {... 185 4e-65
BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2... 190 3e-48
CB893805 similar to GP|10177935|d copia-type polyprotein {Arabid... 163 3e-40
AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsi... 160 3e-39
BG587156 similar to PIR|G85055|G8 probable polyprotein [imported... 157 1e-38
BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F2... 140 2e-33
TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative ret... 138 1e-32
TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-relate... 76 6e-28
AJ502495 weakly similar to GP|18071369|g putative gag-pol polypr... 118 1e-26
BI262917 weakly similar to GP|19920130|g Putative retroelement {... 112 9e-25
TC89912 weakly similar to PIR|B84512|B84512 probable retroelemen... 109 4e-24
BG587170 similar to PIR|F86470|F8 probable retroelement polyprot... 103 4e-22
BG586293 weakly similar to PIR|E84473|E84 probable retroelement ... 96 9e-20
BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vu... 88 1e-17
BG586273 weakly similar to PIR|F86470|F8 probable retroelement p... 74 2e-13
BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sati... 66 3e-12
BG644677 weakly similar to GP|7682800|gb| Hypothetical protein T... 70 4e-12
CB893680 weakly similar to GP|1167523|db ORF(AA 1-1338) {Nicotia... 70 5e-12
TC92908 similar to GP|10140704|gb|AAG13538.1 putative gag-pol po... 58 2e-08
BG587174 similar to PIR|A47759|A4775 retrovirus-related reverse ... 55 1e-07
>BG644690 weakly similar to GP|18542179|gb putative pol protein {Zea mays},
partial (22%)
Length = 629
Score = 185 bits (469), Expect(2) = 4e-65
Identities = 89/141 (63%), Positives = 113/141 (80%), Gaps = 1/141 (0%)
Frame = -2
Query: 519 VVRNKARLVAQGYRQQEGIDYTETFAPVARLEAIRLLISFSVNHNIILHQMDVKSVFLNG 578
+ RNK++LV QGY Q+EGIDY E F+PVAR+EAIR+LI+F+ L+QMDVKS F+NG
Sbjct: 424 ITRNKSKLVVQGYNQKEGIDYDEAFSPVARMEAIRILIAFAAFMGFKLYQMDVKSAFING 245
Query: 579 YISEEVYVHQPPGFEDEKNPDHVFNLKKSLYGLKQAPRAWYERL-RFLLENEFVRGKVDT 637
+ EEV+V QPPGFED + P+HVF L K+LYGLKQAPRAWYERL +FLL+N F RGK+D
Sbjct: 244 DLKEEVFVKQPPGFEDAEVPNHVFRLNKTLYGLKQAPRAWYERLSKFLLKNGFKRGKIDN 65
Query: 638 TLFCKTYKDDILIVQIYVDDI 658
TLF + ++LI+Q+YVDDI
Sbjct: 64 TLFLLKRE*ELLIIQVYVDDI 2
Score = 82.8 bits (203), Expect(2) = 4e-65
Identities = 35/64 (54%), Positives = 50/64 (77%)
Frame = -3
Query: 450 LLSLKGLVSLIEPKSIDEALQDKDWILAMEEELNQFSKNDVWNIVKKPQGVHIIGTKWVF 509
L+S +S IEPK++ EAL+D DWI +M+EEL+QF ++ VW +V +P+G +IGT+WVF
Sbjct: 621 LVSFSAFISSIEPKNVKEALRDADWINSMQEELHQFERSKVWYLVPRPEGKTVIGTRWVF 442
Query: 510 RNKL 513
RNKL
Sbjct: 441 RNKL 430
>BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2O9.150 -
Arabidopsis thaliana, partial (11%)
Length = 732
Score = 190 bits (482), Expect = 3e-48
Identities = 95/217 (43%), Positives = 137/217 (62%), Gaps = 1/217 (0%)
Frame = +1
Query: 693 IQVDQTPEATYIHQSKYTKELLKKFNMTESIIAKTLMHPTCILEKEDASGKVCQKLYRGM 752
++V Q E YI Q KY +LL++F M +S +++ + P C L K++ KV Y+ +
Sbjct: 1 VEVIQNEEGIYICQRKYVTDLLERFGMEKSNLSRNPIAPRCKLIKDENGVKVDATKYKQI 180
Query: 753 ICSFLYLTASRPDILFSEHLCARFQSDPRETHLTVVKRILRYLKGTTNLGLLYKKTSEYK 812
+ +YL A+RPD+++ L +RF + P E H+ VKR+LRYL GT NLG++YK+ K
Sbjct: 181 VGCLMYLAATRPDLMYVLSLISRFMNCPTELHMHAVKRVLRYLNGTINLGIMYKRNGSEK 360
Query: 813 LSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISIAICNT*M 872
L Y D+DYAGD +RKSTSG L S VSW+SK+Q + LST +AE+I+ A C
Sbjct: 361 LEAYTDSDYAGDLDDRKSTSGYVFMLSSGAVSWSSKKQPVVTLSTTKAEFIAAAFCACQS 540
Query: 873 LWMKHQLEDYQILES-NIPIYCDNTAAISLSKNPILH 908
+WM+ LE +S +I +YCDN + I LSKNP+LH
Sbjct: 541 VWMRRVLEKLGYTQSGSITMYCDNNSTIKLSKNPVLH 651
>CB893805 similar to GP|10177935|d copia-type polyprotein {Arabidopsis
thaliana}, partial (14%)
Length = 778
Score = 163 bits (412), Expect = 3e-40
Identities = 91/260 (35%), Positives = 145/260 (55%), Gaps = 16/260 (6%)
Frame = +3
Query: 461 EPKSIDEALQDKDWILAMEEELNQFSKNDVWNIVKKPQGVHIIGTKWVFRNKLNEKGDVV 520
+P + +EA++ + W +M E+ +N+ W + G IG KW+F+ KLNE G++
Sbjct: 39 DPTTFEEAVKSEKWRASMNNEMEATERNNTWELTDLRSGAKTIGLKWIFKTKLNENGEIE 218
Query: 521 RNKARLVAQGYRQQEGIDYTETFAPVARLEAIRLLISFSVN--------------HNIIL 566
+ KARLVA+GY QQ G+DYTE FAPVAR + IR++I+ + H+ +
Sbjct: 219 KYKARLVAKGYSQQYGVDYTEVFAPVARWDTIRMVIALAAQIKRDGVCIS*M*KAHSCME 398
Query: 567 HQMDVKSVFLNGYISEEVYVHQPPGFEDEKNPDHVFNLKKSLYGLKQAPRAWYERLR-FL 625
+ M K + +N + + +K++LYGLKQAPRAWY R+ +
Sbjct: 399 N*MR-KFLLINHRVM*RRVIS--------------*RVKRALYGLKQAPRAWYSRIEAYF 533
Query: 626 LENEFVRGKVDTTLFCKTYK-DDILIVQIYVDDIIFGSANSSLCKEFSEMMQAEFEMSMM 684
+ F + + TLF K + ILI+ +YVDD+IF + ++ +EF + M+ EF MS +
Sbjct: 534 TKEGFEKCPYEHTLFVKLSEGGKILIISLYVDDLIFIGNDENMFEEFKKSMKKEFNMSDL 713
Query: 685 GELKYFLGIQVDQTPEATYI 704
G++ YFLG++V Q + YI
Sbjct: 714 GKMHYFLGVEVTQNEKGIYI 773
>AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsis thaliana},
partial (9%)
Length = 675
Score = 160 bits (404), Expect = 3e-39
Identities = 91/218 (41%), Positives = 125/218 (56%), Gaps = 4/218 (1%)
Frame = +1
Query: 453 LKGLVSLIEPKSID---EALQDKDWILAMEEELNQFSKNDVWNIVKKPQGVHIIGTKWVF 509
LK V L EP D L D W+ AM+ E N W++V P IG KWV+
Sbjct: 25 LKPKVFLTEPCPQDCENLPLSDPRWLQAMKTEYKALIDNKTWDLVPLPPHKKAIGCKWVY 204
Query: 510 RNKLNEKGDVVRNKARLVAQGYRQQEGIDYTETFAPVARLEAIRLLISFSVNHNIILHQM 569
R K N G V + KARLVA+G+ Q G DYTETF+PV + IRL+++ ++ + + Q+
Sbjct: 205 RVKENPDGSVNKFKARLVAKGFSQTLGCDYTETFSPVIKPVTIRLILTIAITYKWEIQQI 384
Query: 570 DVKSVFLNGYISEEVYVHQPPGFEDEKNPDHVFNLKKSLYGLKQAPRAWYERLRFL-LEN 628
D+ + FLNG++ EEVY+ QP GFE N V L KSLYGLKQAPRAWYE L ++
Sbjct: 385 DINNAFLNGFLQEEVYMSQPQGFE-AANKSLVCKLNKSLYGLKQAPRAWYEXLTSAQIQF 561
Query: 629 EFVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANSS 666
F + + D +L + + IYVDDI+ +++S
Sbjct: 562 GFTKSRCDPSLLIYNQNGACIYLXIYVDDILITGSSAS 675
>BG587156 similar to PIR|G85055|G8 probable polyprotein [imported] -
Arabidopsis thaliana, partial (17%)
Length = 618
Score = 157 bits (398), Expect = 1e-38
Identities = 79/183 (43%), Positives = 113/183 (61%), Gaps = 1/183 (0%)
Frame = -1
Query: 462 PKSIDEALQDKDWILAMEEELNQFSKNDVWNIVKKPQGVHIIGTKWVFRNKLNEKGDVVR 521
P+S +EA++DK+W ++ E KND W + P+G + ++W+F K G + R
Sbjct: 558 PRSYEEAMEDKEWKESVGAEAGAMIKNDTWYESELPKGKKAVSSRWIFTIKYKADGSIER 379
Query: 522 NKARLVAQGYRQQEGIDYTETFAPVARLEAIRLLISFSVNHNIILHQMDVKSVFLNGYIS 581
K RLVA+G+ G DY ETFAPVA+L IR+++S +VN L QMDVK+ FL G +
Sbjct: 378 KKTRLVARGFTLTYGEDYIETFAPVAKLHTIRIVLSLAVNLGWGLWQMDVKNAFLQGELE 199
Query: 582 EEVYVHQPPGFEDEKNPDHVFNLKKSLYGLKQAPRAWYERLRFLLENE-FVRGKVDTTLF 640
+EVY++ PPG E +V LKK++YGLKQ+PRAWY +L L F + ++D TLF
Sbjct: 198 DEVYMYPPPGLEHLVKRGNVLRLKKAIYGLKQSPRAWYNKLSTTLNGRGFRKSELDHTLF 19
Query: 641 CKT 643
T
Sbjct: 18 TLT 10
>BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F20P5.25
[imported] - Arabidopsis thaliana, partial (10%)
Length = 744
Score = 140 bits (354), Expect = 2e-33
Identities = 85/244 (34%), Positives = 132/244 (53%), Gaps = 4/244 (1%)
Frame = +2
Query: 601 VFNLKKSLYGLKQAPRAWYERL-RFLLENEFVRGKVDTTLFCKTYKDDILIVQIYVDDII 659
V L+KS+YGLKQA R WY +L L+ +++ D +LF K + +YVDDI+
Sbjct: 20 VCELQKSIYGLKQASRQWYSKLSESLISFGYLQSSSDFSLFTKFKDSSFTTLLVYVDDIV 199
Query: 660 FGSANSSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEATYIHQSKYTKELLKKFNM 719
+ S + + F++ +G L+YFLG++V ++ + ++Q KYT ELL+
Sbjct: 200 LAGNDISEIQHVKCFLIDRFKIKDLGSLRYFLGLEVARSKQGILLNQRKYTLELLED--- 370
Query: 720 TESIIAKTLMHPTCI---LEKEDASGKVCQKLYRGMICSFLYLTASRPDILFSEHLCARF 776
+ ++ K+ + P I L D+ + YR +I +YLT +RPDI F+ ++F
Sbjct: 371 SGNLAVKSTLTPYDISLKLHNSDSPLYNDETQYRRLIGKLIYLTTTRPDISFAVQQLSQF 550
Query: 777 QSDPRETHLTVVKRILRYLKGTTNLGLLYKKTSEYKLSGYCDADYAGDRTERKSTSGNCQ 836
S P++ H R+L+YLK GL Y TS KLS + D+D+A T RKS +G
Sbjct: 551 VSKPQQVHYQAAIRVLQYLKTAPAKGLFYSATSNLKLSSFADSDWATCPTTRKSVTGYWV 730
Query: 837 FLGS 840
FLGS
Sbjct: 731 FLGS 742
>TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative retroelement
{Oryza sativa} [Oryza sativa (japonica cultivar-group)],
partial (10%)
Length = 823
Score = 138 bits (347), Expect = 1e-32
Identities = 80/236 (33%), Positives = 124/236 (51%), Gaps = 2/236 (0%)
Frame = +1
Query: 123 GKFTKVSFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFISR 182
G KVSF T L+ +H DL+GP K S GG+RY M I+DD+ R WV F+
Sbjct: 43 GNRKKVSFSTATH-RTKGILDYIHSDLWGPSKVTSYGGRRYMMTIIDDFPRKVWVYFLRY 219
Query: 183 KDESHSVFSTFIVQVQNENACRIMRVRSDHGGVFENDKFESLFDSYGIAYDFSCPRTPQQ 242
K+E+ F + + V+ + + ++ +D+ F + F ++GIA + PR PQQ
Sbjct: 220 KNETFPTFKKWRILVETQTGKNVKKLITDN*LEFCSSDFNEFCTNHGIARHKTIPRNPQQ 399
Query: 243 NGVVERKNRTLQEMSRTMLQEIDM--AKHFWAEAVNTSCYIQNRISVRPILNKTPYELWK 300
NGV ER RTL E +R ML + + W EA +T+C++ NR + K P ++W
Sbjct: 400 NGVAERMIRTLLERARCMLSNAGL*N*RDLWVEAASTACHLVNRSPHSALDFKVPEDIWS 579
Query: 301 KVKPNISYFHPFGCVCYALNTKDRLHKFDSKSSKCLLLGYSKRSKGFRIYNTDAKT 356
+ S FGC YAL +L ++ +C+ L Y+ SKG+R++ +D K+
Sbjct: 580 GNLVDYSNLRIFGCPAYALVNDGKL---APRAGECIFLSYASESKGYRLWCSDPKS 738
>TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
(EC 3.4.23.-);, partial (7%)
Length = 705
Score = 75.9 bits (185), Expect(2) = 6e-28
Identities = 38/77 (49%), Positives = 53/77 (68%)
Frame = +1
Query: 788 VKRILRYLKGTTNLGLLYKKTSEYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWAS 847
VKRI+RY+KGT+ + + + SE + GY D+D+AGD +RKST+G L VSW S
Sbjct: 1 VKRIMRYIKGTSGVAVCFGG-SELTVRGYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLS 177
Query: 848 KRQSTIALSTAEAEYIS 864
K Q+ +ALST EAEY++
Sbjct: 178 KLQTVVALSTTEAEYMA 228
Score = 67.8 bits (164), Expect(2) = 6e-28
Identities = 28/82 (34%), Positives = 50/82 (60%)
Frame = +3
Query: 873 LWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRAKYIEVKYHFIRDYVQKGYFF* 932
+WM+ +E+ + I +YCD+ +A+ +++NP HSR K+I ++YHF+R+ V++G
Sbjct: 255 IWMQRLMEELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGIQYHFVREVVEEGSVDM 434
Query: 933 SSLILTINSADIFTKPLAEDRF 954
+ N AD TK + D+F
Sbjct: 435 QKIHTNDNLADAMTKSINTDKF 500
>AJ502495 weakly similar to GP|18071369|g putative gag-pol polyprotein {Oryza
sativa}, partial (9%)
Length = 542
Score = 118 bits (295), Expect = 1e-26
Identities = 65/147 (44%), Positives = 90/147 (61%), Gaps = 2/147 (1%)
Frame = +2
Query: 819 ADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISIAICNT*MLWMKHQ 878
+D+AGD RKSTSG LG+ +SW+SK+Q +A STAEAEYI+ C T +W++
Sbjct: 2 SDWAGDTETRKSTSGYAFHLGTGAISWSSKKQPVVAFSTAEAEYIASTSCATQTVWLRRI 181
Query: 879 LEDYQILESNIP--IYCDNTAAISLSKNPILHSRAKYIEVKYHFIRDYVQKGYFF*SSLI 936
LE E N P IYCDN +AI+LSKNP+ H R+K+I++++H IR+ + +
Sbjct: 182 LE-VMHHEQNTPTKIYCDNKSAIALSKNPVFHGRSKHIDIQFHKIRELIAEKEVVIEYCP 358
Query: 937 LTINSADIFTKPLAEDRFKFILKNLNM 963
ADIFTKPL + F + K L M
Sbjct: 359 TEEKIADIFTKPLKIESFYKLKKMLGM 439
>BI262917 weakly similar to GP|19920130|g Putative retroelement {Oryza
sativa} [Oryza sativa (japonica cultivar-group)],
partial (8%)
Length = 426
Score = 112 bits (279), Expect = 9e-25
Identities = 55/113 (48%), Positives = 68/113 (59%)
Frame = +1
Query: 239 TPQQNGVVERKNRTLQEMSRTMLQEIDMAKHFWAEAVNTSCYIQNRISVRPILNKTPYEL 298
TPQQNGV ER NRTL E +R ML+ MAK FWAEAV T+CY+ NR I KTP E+
Sbjct: 85 TPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTVIDLKTPMEM 264
Query: 299 WKKVKPNISYFHPFGCVCYALNTKDRLHKFDSKSSKCLLLGYSKRSKGFRIYN 351
WK + S H FGC Y + K D KS KC+ LGY+ KG+ +++
Sbjct: 265 WKGKPVDYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYXLWD 423
>TC89912 weakly similar to PIR|B84512|B84512 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(10%)
Length = 814
Score = 109 bits (273), Expect = 4e-24
Identities = 57/162 (35%), Positives = 91/162 (55%), Gaps = 2/162 (1%)
Frame = +1
Query: 788 VKRILRYLKGTTNLGLLYKKTSEYK--LSGYCDADYAGDRTERKSTSGNCQFLGSNLVSW 845
+K +L+YL + L Y K ++ + L GY DADYAG+ RKS SG L +SW
Sbjct: 7 LKWVLKYLNESLKSSLKYTKAAQEEDALEGYVDADYAGNVDTRKSLSGFVFTLYGTTISW 186
Query: 846 ASKRQSTIALSTAEAEYISIAICNT*MLWMKHQLEDYQILESNIPIYCDNTAAISLSKNP 905
+ +QS + LST +AEYI+ +W+K + + I + + I+CD+ +AI L+ +
Sbjct: 187 KANQQSVVTLSTTQAEYIAFVEGVKDAIWLKGMIGELGITQEYVKIHCDSQSAIHLANHQ 366
Query: 906 ILHSRAKYIEVKYHFIRDYVQKGYFF*SSLILTINSADIFTK 947
+ H R K+I+++ HFIRD ++ + N AD+FTK
Sbjct: 367 VYHERTKHIDIRLHFIRDMIESKEIVVEKMASEENPADVFTK 492
>BG587170 similar to PIR|F86470|F8 probable retroelement polyprotein
[imported] - Arabidopsis thaliana, partial (13%)
Length = 718
Score = 103 bits (256), Expect = 4e-22
Identities = 67/206 (32%), Positives = 107/206 (51%)
Frame = -3
Query: 83 HRRLGHASMRKIS*LCKLDLVRGLPTLKFSSDALCEACQKGKFTKVSFKAKNVVSTSRPL 142
H RLGH R ++ + LP + F + CEAC GK K F + V +
Sbjct: 578 HARLGHPHGRALNLM--------LPGVVFENKN-CEACILGKHCKNVFPRTSTVYENC-F 429
Query: 143 ELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFISRKDESHSVFSTFIVQVQNENA 202
+L++ DL+ + S +Y + +D+ S++TW+ I KD F F V N
Sbjct: 428 DLIYTDLW-TAPSLSRDNHKYFVTFIDEKSKYTWLTLIPSKDRVIDAFKNFQAYVTNHYH 252
Query: 203 CRIMRVRSDHGGVFENDKFESLFDSYGIAYDFSCPRTPQQNGVVERKNRTLQEMSRTMLQ 262
+I +RSD+GG + + F+S D +GI + SCP TPQQNGV +RKN+ L E++R+++
Sbjct: 251 AKIKILRSDNGGEYTSYAFKSHLDHHGILHQTSCPYTPQQNGVAKRKNKHLMEVARSLMF 72
Query: 263 EIDMAKHFWAEAVNTSCYIQNRISVR 288
+ + V+T+CY+ N I +
Sbjct: 71 QAN---------VSTACYLINWIPTK 21
>BG586293 weakly similar to PIR|E84473|E84 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(7%)
Length = 763
Score = 95.5 bits (236), Expect = 9e-20
Identities = 48/116 (41%), Positives = 73/116 (62%)
Frame = +2
Query: 464 SIDEALQDKDWILAMEEELNQFSKNDVWNIVKKPQGVHIIGTKWVFRNKLNEKGDVVRNK 523
S+D + +D I ++ L +VKKP GV IG +W+++ K NE G +++ K
Sbjct: 5 SLDRCNEGRDRIYYQKQTLK---------LVKKPTGVKPIGLRWIYKIKRNEDGTLIKYK 157
Query: 524 ARLVAQGYRQQEGIDYTETFAPVARLEAIRLLISFSVNHNIILHQMDVKSVFLNGY 579
ARLVA+GY +Q+GID+ E FAPV R+E I LL++ + + +H +DVK FLNG+
Sbjct: 158 ARLVAKGYVKQQGIDFDEVFAPVVRIETI*LLLALAATNGC*IHHIDVKIAFLNGH 325
>BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vulgaris},
partial (13%)
Length = 494
Score = 88.2 bits (217), Expect = 1e-17
Identities = 48/122 (39%), Positives = 70/122 (57%), Gaps = 3/122 (2%)
Frame = +1
Query: 763 RPDILFSEHLCARFQSDPRETHLTVVKRILRYLKGTTNLGLLY---KKTSEYKLSGYCDA 819
RPDI +S + ++F DPR+ HL RILRY++GT GLL+ K+ Y+L Y D+
Sbjct: 121 RPDICYSVSVISKFMHDPRKPHLIAANRILRYVRGTMEYGLLFPYGAKSEVYELICYSDS 300
Query: 820 DYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISIAICNT*MLWMKHQL 879
D+ GD R+STSG +SW +K+Q ALS+ EAEYI+ LW+ +
Sbjct: 301 DWCGD---RRSTSGYVFKFNDAAISWCTKKQPITALSSYEAEYIAGTFATFQALWLDSVI 471
Query: 880 ED 881
++
Sbjct: 472 KE 477
>BG586273 weakly similar to PIR|F86470|F8 probable retroelement polyprotein
[imported] - Arabidopsis thaliana, partial (7%)
Length = 705
Score = 74.3 bits (181), Expect = 2e-13
Identities = 43/167 (25%), Positives = 88/167 (51%), Gaps = 25/167 (14%)
Frame = -2
Query: 278 SCYIQNRISVRPILNKTPYELWKKVKPNISYFHPFGCVCYALNTKDRLHKFDSKSSKCLL 337
+CY+ NRI R + ++ P+E+ + KP+++Y FGC+CY L + +K +++S K +
Sbjct: 704 ACYLINRIPTRVLKDQAPFEVLNQRKPSLTYMRVFGCLCYVLVPGELRNKLEARSRKAMF 525
Query: 338 LGYSKRSKGFRIYNTDAKTIEEYIHVRFDDK--------------LDSDQSKLVEKFVD- 382
+GYS KG++ Y+ +A+ + V+F ++ L SD++ ++ ++
Sbjct: 524 IGYSTTQKGYKCYDPEARRVLVSRDVKFIEERGYYEEKNQEDLRDLTSDKAGVLRVILEG 345
Query: 383 ----MSINVSDKGKAPEEA--EPEEDSP----EEVGPSDPQPQKKSR 419
M+ + S + + PEE+ EP + + G S+P+ Q+ +
Sbjct: 344 LGIKMNQDQSTRSRQPEESSNEPRRAAQTPHLDHEGGSEPETQENGQ 204
>BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sativa (japonica
cultivar-group)}, partial (8%)
Length = 503
Score = 66.2 bits (160), Expect(2) = 3e-12
Identities = 43/123 (34%), Positives = 67/123 (53%), Gaps = 4/123 (3%)
Frame = +1
Query: 613 QAPRAWYERLRFLLEN-EFVRGKVDTTLFCK---TYKDDILIVQIYVDDIIFGSANSSLC 668
Q+PR W++R +++ +++ + D +F K T K ILIV YVDDI +
Sbjct: 1 QSPRDWFDRFT*VVKKFGYIQCQTDHAMFIKHSSTVKKAILIV--YVDDIFLTGDHGK*I 174
Query: 669 KEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEATYIHQSKYTKELLKKFNMTESIIAKTL 728
K ++ EFE+ +G LKYFLG++V + + + I Q KY +LLK+ T I KT+
Sbjct: 175 KRLKNLLAEEFEIKDLGNLKYFLGMEVARWKKGSSISQRKYVLDLLKE---TRMIGCKTI 345
Query: 729 MHP 731
P
Sbjct: 346 RDP 354
Score = 24.3 bits (51), Expect(2) = 3e-12
Identities = 14/44 (31%), Positives = 23/44 (51%)
Frame = +2
Query: 725 AKTLMHPTCILEKEDASGKVCQKLYRGMICSFLYLTASRPDILF 768
++T M T L D V + Y+ ++ +YL+ +RPDI F
Sbjct: 344 SETPMDATVKLGTLDNGTLVDKGRYQRLVGKLIYLSHTRPDISF 475
>BG644677 weakly similar to GP|7682800|gb| Hypothetical protein T15F17.l
{Arabidopsis thaliana}, partial (3%)
Length = 539
Score = 70.1 bits (170), Expect = 4e-12
Identities = 40/111 (36%), Positives = 61/111 (54%)
Frame = -3
Query: 757 LYLTASRPDILFSEHLCARFQSDPRETHLTVVKRILRYLKGTTNLGLLYKKTSEYKLSGY 816
+ LT P+I FS +L +R+ S P H +K I +YLKG ++GL Y K L GY
Sbjct: 531 ILLTLQGPNITFSINLLSRYSSAPTMRH*NGIKHICKYLKGIIDMGLFYSKDCSPDLIGY 352
Query: 817 CDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISIAI 867
+A Y D + +S +G G+ ++SW S + STIA S+ A Y+ + +
Sbjct: 351 VNA*YLSDPHKARS*TGYIFTCGNTVISWRSTK*STIATSSNHA-YVQVIL 202
>CB893680 weakly similar to GP|1167523|db ORF(AA 1-1338) {Nicotiana tabacum},
partial (7%)
Length = 780
Score = 69.7 bits (169), Expect = 5e-12
Identities = 38/95 (40%), Positives = 53/95 (55%)
Frame = -2
Query: 543 FAPVARLEAIRLLISFSVNHNIILHQMDVKSVFLNGYISEEVYVHQPPGFEDEKNPDHVF 602
F P+ +L I L+S N+ L +DVK+ FL G + E++Y+HQP GF E V
Sbjct: 554 FVPIVKLNTIMFLLSIVAIENLYLE*LDVKTAFLRGDLVEDIYMHQPEGFS*EVG-KMVG 378
Query: 603 NLKKSLYGLKQAPRAWYERLRFLLENEFVRGKVDT 637
LKKS+YGLKQ PR L+ L + R ++ T
Sbjct: 377 KLKKSMYGLKQGPRQCI*SLKALCTRKGFRSEIST 273
>TC92908 similar to GP|10140704|gb|AAG13538.1 putative gag-pol polyprotein
{Oryza sativa}, partial (1%)
Length = 638
Score = 58.2 bits (139), Expect = 2e-08
Identities = 47/186 (25%), Positives = 89/186 (47%), Gaps = 1/186 (0%)
Frame = +2
Query: 387 VSDKGKAPEEAEPEEDSPEEV-GPSDPQPQKKSRIVASHPKELILGNKDEPVRTRSAFRP 445
+ + K+ E + E + EE+ G +P +K + SH L +K + +
Sbjct: 53 IQEDFKSHGEVQEESNYIEEIKGFQEPTQLRKIKE*ESHLVTLNSSSKSYHIFHYVGYSF 232
Query: 446 SEETLLSLKGLVSLIEPKSIDEALQDKDWILAMEEELNQFSKNDVWNIVKKPQGVHIIGT 505
S + SL + S IEPK+ +A Q ++W+ AME+E+ +N+ + +G +
Sbjct: 233 SAKHRASLAAITSNIEPKNYVQAAQ*QEWLAAMEQEIQVLEENNTSTLEPLREGKKWVDC 412
Query: 506 KWVFRNKLNEKGDVVRNKARLVAQGYRQQEGIDYTETFAPVARLEAIRLLISFSVNHNII 565
+ V++ G++ + KA+LVA+ + Q EG D+ + + + R L++ +
Sbjct: 413 RPVYKIIHKANGEIEKYKAQLVAKDFVQVEGEDF*D-LCLSNKDDNCRCLLTIAAAKG*Q 589
Query: 566 LHQMDV 571
LH MDV
Sbjct: 590 LHLMDV 607
>BG587174 similar to PIR|A47759|A4775 retrovirus-related reverse
transcriptase homolog - rape retrotransposon copia-like
(fragment), partial (84%)
Length = 249
Score = 55.1 bits (131), Expect = 1e-07
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Frame = -1
Query: 580 ISEEVYVHQPPGFEDEKNPDHVFNLKKSLYGLKQAPRAWYERLRFLLENEFVRGKVDTTL 639
+ E++Y+ QP GF DHV L+KSLYGLKQ+PR WY+R + G + T +
Sbjct: 246 LEEKIYMTQPEGFLFPGKEDHVCKLRKSLYGLKQSPRQWYKRFDSYRSSWATTGVLMTVV 67
Query: 640 FCKT--YKDDILIVQIYVDDII 659
T + + +YVDD++
Sbjct: 66 ST*TR*RMSRYIYLVLYVDDML 1
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.322 0.137 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,991,714
Number of Sequences: 36976
Number of extensions: 431141
Number of successful extensions: 2075
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 2021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2050
length of query: 967
length of database: 9,014,727
effective HSP length: 105
effective length of query: 862
effective length of database: 5,132,247
effective search space: 4423996914
effective search space used: 4423996914
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Lotus: description of TM0101.5