TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0101.13
         (385 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC80013 similar to PIR|T48875|T48875 copper transport protein [i...    30  1.6
TC83036 similar to PIR|C96637|C96637 hypothetical protein F11P17...    30  2.0
TC86510 similar to GP|20160777|dbj|BAB89718. putative ribonucleo...    29  2.7
TC83764 similar to GP|19387258|gb|AAL87170.1 putative AAA-type A...    28  6.0

>TC80013 similar to PIR|T48875|T48875 copper transport protein [imported] -
           Arabidopsis thaliana, partial (45%)
          Length = 632

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = -1

Query: 132 RKVFVRGKCVNFSPAIINQTLERS--VVEFVEEELSLDTVAEELTAGRVKK 180
           R+V  R   + F P ++N+ LER+   ++  +  +  +T   EL AG++ K
Sbjct: 326 RRV*TRPATIGFEPGLMNRVLERNSMSMDMAKTRIKANTYLPELPAGQLSK 174


>TC83036 similar to PIR|C96637|C96637 hypothetical protein F11P17.13
            [imported] - Arabidopsis thaliana, partial (20%)
          Length = 1256

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 14/35 (40%), Positives = 15/35 (42%)
 Frame = +2

Query: 316  LRNSQCHC*T*GHFQGTSRDHQDCCC*ETKGGCSH 350
            L   QCH     H Q TSR+  DC       G SH
Sbjct: 983  LSKPQCHTSQRSHVQSTSRESSDCSSTSANNGKSH 1087


>TC86510 similar to GP|20160777|dbj|BAB89718. putative ribonucleoprotein
           {Oryza sativa (japonica cultivar-group)}, partial (67%)
          Length = 1587

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 26/96 (27%), Positives = 45/96 (46%)
 Frame = +1

Query: 110 KLVKEFIVNLSEDVNNSTSPEFRKVFVRGKCVNFSPAIINQTLERSVVEFVEEELSLDTV 169
           K  +E++VNL     N   P  RK   RG+    +    + TL   + E  EE  S +  
Sbjct: 22  KRKREYLVNLHRRPPNYEKPNLRKKRERGRERIVTRNFFDSTL---MAETKEESKSNNEE 192

Query: 170 AEELTAGRVKKWPAKKLLSTGVLSVKYAILNRIGVV 205
           + +L  G+V K   +  L T  L  ++AI++ + ++
Sbjct: 193 SVKLFVGQVPKHMTEDELLT--LFKEFAIVDEVNII 294


>TC83764 similar to GP|19387258|gb|AAL87170.1 putative AAA-type ATPase
           {Oryza sativa (japonica cultivar-group)}, partial (43%)
          Length = 1250

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 13/30 (43%), Positives = 18/30 (59%), Gaps = 2/30 (6%)
 Frame = +3

Query: 181 WPAKKLLSTGVLSVKYAI--LNRIGVVNWV 208
           WPA KLLS GVL   + +  L ++ +  WV
Sbjct: 810 WPASKLLSMGVLIAPWILSCLEKLLITRWV 899


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.339    0.147    0.497 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,354,631
Number of Sequences: 36976
Number of extensions: 221504
Number of successful extensions: 1366
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1366
length of query: 385
length of database: 9,014,727
effective HSP length: 98
effective length of query: 287
effective length of database: 5,391,079
effective search space: 1547239673
effective search space used: 1547239673
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 59 (27.3 bits)