BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0100b.1
(354 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BI308204 similar to PIR|JC7336|JC7 zinc-finger protein - Arabido... 129 3e-34
TC88671 similar to PIR|JC7336|JC7336 zinc-finger protein - Arabi... 102 2e-22
BF636112 similar to GP|13174240|gb| putative zinc finger protein... 92 3e-19
TC85373 similar to GP|15028099|gb|AAK76580.1 putative flowering ... 89 3e-18
TC82857 similar to PIR|T52076|T52076 ABI3-interacting protein ai... 67 1e-11
TC85333 similar to GP|15028099|gb|AAK76580.1 putative flowering ... 67 1e-11
BG452497 similar to GP|15028099|gb| putative flowering protein C... 67 1e-11
TC90874 similar to PIR|T52076|T52076 ABI3-interacting protein ai... 58 5e-09
TC92294 similar to GP|10281006|dbj|BAB13743. pseudo-response reg... 55 4e-08
TC88177 homologue to GP|10281004|dbj|BAB13742. pseudo-response r... 53 2e-07
TC80004 similar to GP|8778844|gb|AAF79843.1| T6D22.9 {Arabidopsi... 50 2e-06
BE124805 similar to GP|10177426|db GATA-binding transcription fa... 49 2e-06
BG583956 homologue to GP|10177159|dbj gb|AAF63824.1~gene_id:K21P... 49 3e-06
TC88635 similar to GP|12711287|emb|CAC28528. GATA-1 zinc finger ... 49 4e-06
TC86792 similar to GP|10281004|dbj|BAB13742. pseudo-response reg... 49 4e-06
TC89696 similar to GP|10177426|dbj|BAB10711. GATA-binding transc... 48 7e-06
TC88293 similar to GP|16323057|gb|AAL15263.1 AT5g57660/MRI1_1 {A... 46 2e-05
TC81215 similar to GP|17064972|gb|AAL32640.1 Unknown protein {Ar... 45 3e-05
AW256569 similar to GP|10177426|dbj GATA-binding transcription f... 45 4e-05
CA921267 homologue to GP|10177426|dbj GATA-binding transcription... 45 4e-05
>BI308204 similar to PIR|JC7336|JC7 zinc-finger protein - Arabidopsis
thaliana, partial (46%)
Length = 811
Score = 129 bits (324), Expect(2) = 3e-34
Identities = 81/189 (42%), Positives = 104/189 (54%), Gaps = 8/189 (4%)
Frame = +1
Query: 29 ANGADEGQHAPATVAASASNASAPHPR--------AGELTISFEGEVYVFPAVTPEKVQA 80
A+G EGQ ++ + HP + +LT+SF G+VYVF +VTPEKVQ+
Sbjct: 181 ASGEGEGQINDVSLENVYVSGDGNHPDMSVQQFDDSSQLTLSFRGQVYVFDSVTPEKVQS 360
Query: 81 VLLLLGQKDIPNSTPNSGLLQQKNFPQIKGINDPSQSSNLSRRFASLVRFREKRKERCFE 140
VLLLLG ++ P S L Q G P++ S +R ASL+RFR+KRKER F+
Sbjct: 361 VLLLLGGCEL---NPGSQCLDTSPLNQRSGAEFPTRCSQ-PQRAASLIRFRQKRKERNFD 528
Query: 141 KKIRYTCRKEVAQRMHRKNGQFASLKEDYKSPAGNLDSSNGTPPCPESIERRCQHCGTSE 200
KK+RY R+EVA RM R GQF S K+ + D +G E C HCG S
Sbjct: 529 KKVRYEVRQEVALRMQRSKGQFTSAKKQDGGNSWGSDPESGQDVVQS--ETSCTHCGISS 702
Query: 201 KSTPAMRRG 209
KSTP MRRG
Sbjct: 703 KSTPMMRRG 729
Score = 33.9 bits (76), Expect(2) = 3e-34
Identities = 12/17 (70%), Positives = 14/17 (81%)
Frame = +3
Query: 209 GPAGPRSLCNACGLMWA 225
G GP++LCNACGL WA
Sbjct: 729 GRLGPKTLCNACGLFWA 779
Score = 28.5 bits (62), Expect = 4.1
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +2
Query: 190 ERRCQHCGTSEKSTPA-MRRGPAGPRSLCNACGLMWANKGTLRDLSKA 236
++R H S ++ P GP+GP N+GTLRDLS A
Sbjct: 668 QKRHAHTVESVQNPPL*CEGGPSGP*DTMQCLWAFLGNRGTLRDLSTA 811
>TC88671 similar to PIR|JC7336|JC7336 zinc-finger protein - Arabidopsis
thaliana, partial (44%)
Length = 1272
Score = 102 bits (254), Expect = 2e-22
Identities = 56/131 (42%), Positives = 72/131 (54%), Gaps = 4/131 (3%)
Frame = +3
Query: 135 KERCFEKKIRYTCRKEVAQRMHRKNGQFASLKEDYKSPAGNLDSSNGTPPCPESIERRCQ 194
K+ +K+ K++ RK GQF + K+ S + D + P I C
Sbjct: 558 KKDALIRKLDMKYVKKLHSGCKRKKGQFTTSKKQDGSNSCGTDQDSSQDASPSEIS--CT 731
Query: 195 HCGTSEKSTPAMRRGPAGPRSLCNACGLMWANKGTLRDLSK----AAKTPYEQNERDTSA 250
HCGTS KSTP MRRGP+GPRSLCNACGL WAN+G LRDLSK + P EQ ++ S+
Sbjct: 732 HCGTSSKSTPMMRRGPSGPRSLCNACGLFWANRGVLRDLSKRHQELSTVPVEQVDQGNSS 911
Query: 251 DMKPSTTEPEN 261
D +T N
Sbjct: 912 DCGTATIPAHN 944
Score = 97.8 bits (242), Expect = 6e-21
Identities = 54/103 (52%), Positives = 76/103 (73%)
Frame = +2
Query: 58 ELTISFEGEVYVFPAVTPEKVQAVLLLLGQKDIPNSTPNSGLLQQKNFPQIKGINDPSQS 117
+LT+SF G+VYVF +VTP KVQ+VLLLLG + PN N+ + Q++ +++ ++ P++
Sbjct: 338 QLTLSFRGQVYVFDSVTPAKVQSVLLLLGGCEQPNVGVNA--VPQQSL-RVESMDFPTKY 508
Query: 118 SNLSRRFASLVRFREKRKERCFEKKIRYTCRKEVAQRMHRKNG 160
S L R ASL+RFR+KRKERCF+KK+RY R+EVA RM K G
Sbjct: 509 SQLHRE-ASLLRFRQKRKERCFDKKVRYEVRQEVALRMQAKEG 634
>BF636112 similar to GP|13174240|gb| putative zinc finger protein {Oryza
sativa}, partial (21%)
Length = 691
Score = 92.0 bits (227), Expect = 3e-19
Identities = 58/134 (43%), Positives = 78/134 (57%), Gaps = 8/134 (5%)
Frame = +3
Query: 29 ANGADEGQHAPATVAASASNASAPHPR--------AGELTISFEGEVYVFPAVTPEKVQA 80
A+G EGQ ++ + HP + +LT+SF G+VYVF +VTPEKVQ+
Sbjct: 225 ASGEGEGQINDVSLENVYVSGDGNHPDMSVQQFDDSSQLTLSFRGQVYVFDSVTPEKVQS 404
Query: 81 VLLLLGQKDIPNSTPNSGLLQQKNFPQIKGINDPSQSSNLSRRFASLVRFREKRKERCFE 140
VLLLLG ++ P S L Q G P++ S +R ASL+RFR+KRKER F+
Sbjct: 405 VLLLLGGCEL---NPGSQCLDTSPLNQRSGAEFPTRCSQ-PQRAASLIRFRQKRKERNFD 572
Query: 141 KKIRYTCRKEVAQR 154
KK+RY R+EVA R
Sbjct: 573 KKVRYEVRQEVALR 614
>TC85373 similar to GP|15028099|gb|AAK76580.1 putative flowering protein
CONSTANS {Arabidopsis thaliana}, partial (22%)
Length = 683
Score = 88.6 bits (218), Expect = 3e-18
Identities = 45/93 (48%), Positives = 58/93 (61%), Gaps = 6/93 (6%)
Frame = +1
Query: 141 KKIRYTCRKEVAQRMHRKNGQFASLK---EDYKSPAGNLDSSNGTPPCPESIERR---CQ 194
K++RY R+EVA RM R G+F S K ++ S N +S G + +++ C+
Sbjct: 76 KRVRYNVRREVALRMQRNKGRFTSAKSKNDESASAEMNCGTSEGLMADNDGSQQQDNVCR 255
Query: 195 HCGTSEKSTPAMRRGPAGPRSLCNACGLMWANK 227
C SEK TP MRRGP GPR+LCNACGLMWANK
Sbjct: 256 QCNISEKCTPMMRRGPEGPRTLCNACGLMWANK 354
>TC82857 similar to PIR|T52076|T52076 ABI3-interacting protein aip1
[imported] - Arabidopsis thaliana, partial (11%)
Length = 818
Score = 67.0 bits (162), Expect = 1e-11
Identities = 44/118 (37%), Positives = 63/118 (53%), Gaps = 1/118 (0%)
Frame = +1
Query: 86 GQKDIPNSTPNSGLLQQKNFPQIKGINDP-SQSSNLSRRFASLVRFREKRKERCFEKKIR 144
G P N L +++P +G + ++ S + RR A+L++FR+K+KERCF+KKIR
Sbjct: 22 GMMPFPYYPMNMCLHPAQSWPSYRGSSSSEAKLSKVDRREAALIKFRQKKKERCFDKKIR 201
Query: 145 YTCRKEVAQRMHRKNGQFASLKEDYKSPAGNLDSSNGTPPCPESIERRCQHCGTSEKS 202
Y RK++A+R R GQF S K N+D NG PP E E G + S
Sbjct: 202 YVNRKQLAERRPRVRGQFVS-----KLNGVNVD-LNGQPPSIEYDENEEDDQGARDYS 357
>TC85333 similar to GP|15028099|gb|AAK76580.1 putative flowering protein
CONSTANS {Arabidopsis thaliana}, partial (22%)
Length = 1421
Score = 66.6 bits (161), Expect = 1e-11
Identities = 27/35 (77%), Positives = 29/35 (82%)
Frame = +1
Query: 193 CQHCGTSEKSTPAMRRGPAGPRSLCNACGLMWANK 227
C+ C SEK TP MRRGP GPR+LCNACGLMWANK
Sbjct: 907 CRQCNISEKCTPMMRRGPEGPRTLCNACGLMWANK 1011
Score = 35.4 bits (80), Expect = 0.034
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 10/98 (10%)
Frame = +1
Query: 94 TPNSGLLQQKNFPQIKGINDPSQSSNLSRRFASLVRFREKRKERCF-------EKKIRYT 146
T +GLL + +G S SNL ++ + K +E K++RY
Sbjct: 397 TLKTGLLSSSRMQRSRG-RFTSTKSNLDESASAEMSCEVKSEESADGFQNGVQNKRVRYN 573
Query: 147 CRKEVAQRMHRKNGQFASLK---EDYKSPAGNLDSSNG 181
R+EVA RM R G+F S K ++ S N +S G
Sbjct: 574 VRREVALRMQRNKGRFTSAKSKNDESASAEMNCGTSEG 687
>BG452497 similar to GP|15028099|gb| putative flowering protein CONSTANS
{Arabidopsis thaliana}, partial (12%)
Length = 648
Score = 66.6 bits (161), Expect = 1e-11
Identities = 27/35 (77%), Positives = 29/35 (82%)
Frame = +1
Query: 193 CQHCGTSEKSTPAMRRGPAGPRSLCNACGLMWANK 227
C+ C SEK TP MRRGP GPR+LCNACGLMWANK
Sbjct: 196 CRQCNISEKCTPMMRRGPEGPRTLCNACGLMWANK 300
>TC90874 similar to PIR|T52076|T52076 ABI3-interacting protein aip1 [imported]
- Arabidopsis thaliana, partial (19%)
Length = 1257
Score = 58.2 bits (139), Expect = 5e-09
Identities = 26/43 (60%), Positives = 35/43 (80%)
Frame = +3
Query: 120 LSRRFASLVRFREKRKERCFEKKIRYTCRKEVAQRMHRKNGQF 162
+ RR A+L++FR+KRKERCF+KKIRY RK++A+R R GQF
Sbjct: 972 VDRREAALMKFRQKRKERCFDKKIRYVNRKQLAERRPRVRGQF 1100
>TC92294 similar to GP|10281006|dbj|BAB13743. pseudo-response regulator 5
{Arabidopsis thaliana}, partial (7%)
Length = 772
Score = 55.1 bits (131), Expect = 4e-08
Identities = 30/66 (45%), Positives = 41/66 (61%)
Frame = +1
Query: 115 SQSSNLSRRFASLVRFREKRKERCFEKKIRYTCRKEVAQRMHRKNGQFASLKEDYKSPAG 174
S S +R A+L +FR KRKERCFEKK+RY RK+ A++ R GQF ++ P
Sbjct: 400 SDSHRSRQREAALTKFRLKRKERCFEKKVRYQSRKKQAEQRLRVKGQFVRKVQNDDHP-- 573
Query: 175 NLDSSN 180
N+DS +
Sbjct: 574 NVDSGD 591
>TC88177 homologue to GP|10281004|dbj|BAB13742. pseudo-response regulator 7
{Arabidopsis thaliana}, partial (4%)
Length = 1310
Score = 52.8 bits (125), Expect = 2e-07
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Frame = +3
Query: 129 RFREKRKERCFEKKIRYTCRKEVAQRMHRKNGQF-----ASLKEDYKSPAGNLDSSNGTP 183
+FR+KRKERCF+KK+RY RK++A + R GQF + KE+ + L S + +
Sbjct: 702 KFRQKRKERCFDKKVRYHSRKKLADQRPRVRGQFVKQIVSDTKEEEIKESEELVSMDNSS 881
Query: 184 PCPESIERRC 193
P+ + +C
Sbjct: 882 DVPQQYQSKC 911
>TC80004 similar to GP|8778844|gb|AAF79843.1| T6D22.9 {Arabidopsis
thaliana}, partial (8%)
Length = 1058
Score = 49.7 bits (117), Expect = 2e-06
Identities = 27/62 (43%), Positives = 35/62 (55%)
Frame = +3
Query: 179 SNGTPPCPESIERRCQHCGTSEKSTPAMRRGPAGPRSLCNACGLMWANKGTLRDLSKAAK 238
+NG P P RRC HC + TP R GP GP++LCNACG+ + G L + AK
Sbjct: 636 NNGQNPIPT---RRCTHC--LSQRTPQWRAGPLGPKTLCNACGVRY-KSGRLLPEYRPAK 797
Query: 239 TP 240
+P
Sbjct: 798 SP 803
>BE124805 similar to GP|10177426|db GATA-binding transcription factor-like
protein {Arabidopsis thaliana}, partial (36%)
Length = 715
Score = 49.3 bits (116), Expect = 2e-06
Identities = 21/53 (39%), Positives = 30/53 (55%)
Frame = +2
Query: 189 IERRCQHCGTSEKSTPAMRRGPAGPRSLCNACGLMWANKGTLRDLSKAAKTPY 241
+ RRC HCG + TP R GP GP++LCNACG+ + + L + A +
Sbjct: 416 VPRRCSHCGVQK--TPQWRTGPGGPKTLCNACGVRYKSGRLLPEYRPACSPTF 568
>BG583956 homologue to GP|10177159|dbj gb|AAF63824.1~gene_id:K21P3.18~similar
to unknown protein {Arabidopsis thaliana}, partial (43%)
Length = 818
Score = 48.9 bits (115), Expect = 3e-06
Identities = 24/52 (46%), Positives = 31/52 (59%)
Frame = +2
Query: 171 SPAGNLDSSNGTPPCPESIERRCQHCGTSEKSTPAMRRGPAGPRSLCNACGL 222
+P + S N P ++ C CGTS+ TP R GPAGP+SLCNACG+
Sbjct: 221 NPNAAVSSDNSNP------KKTCADCGTSK--TPLWRGGPAGPKSLCNACGI 352
>TC88635 similar to GP|12711287|emb|CAC28528. GATA-1 zinc finger protein
{Nicotiana tabacum}, partial (21%)
Length = 1327
Score = 48.5 bits (114), Expect = 4e-06
Identities = 22/59 (37%), Positives = 32/59 (53%)
Frame = +1
Query: 191 RRCQHCGTSEKSTPAMRRGPAGPRSLCNACGLMWANKGTLRDLSKAAKTPYEQNERDTS 249
R+C HC +E TP R GP GP++LCNACG+ + + + AA +E + S
Sbjct: 820 RKCTHCEVTE--TPQWREGPKGPKTLCNACGVRYRSGRLFPEYRPAASPTFEASVHSNS 990
>TC86792 similar to GP|10281004|dbj|BAB13742. pseudo-response regulator 7
{Arabidopsis thaliana}, partial (32%)
Length = 2209
Score = 48.5 bits (114), Expect = 4e-06
Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 3/54 (5%)
Frame = +1
Query: 112 NDPSQSSNLSRRFASLVRFREKRKER---CFEKKIRYTCRKEVAQRMHRKNGQF 162
N QS N R A+L++FR+KRKER CF K++RY R+++A++ R GQF
Sbjct: 1756 NRVDQSKNFQRE-AALIKFRQKRKERKERCFHKQVRYQSRQKLAEQRPRYRGQF 1914
>TC89696 similar to GP|10177426|dbj|BAB10711. GATA-binding transcription
factor-like protein {Arabidopsis thaliana}, partial
(25%)
Length = 806
Score = 47.8 bits (112), Expect = 7e-06
Identities = 36/125 (28%), Positives = 52/125 (40%), Gaps = 2/125 (1%)
Frame = +2
Query: 99 LLQQKNFPQIKGINDPSQSSNLSRRFASLVRFREKRKERCFEKKIRYTCRKEVAQRMHRK 158
L Q P ++ S S+N S L + + K R R +A
Sbjct: 326 LKHQMTSPMLENSTSSSNSNNSSNSITLLSGYNHMKFPVRARSKSRSKPRLGLADA---- 493
Query: 159 NGQFASLKEDYKSPAGNLDSSN--GTPPCPESIERRCQHCGTSEKSTPAMRRGPAGPRSL 216
++L+ +K P+ TP +I R+C HCG + TP R GP GP++L
Sbjct: 494 ----SNLQFPWKQPSTKTSKEKVKQTP----TIGRKCHHCGVDD--TPQWRAGPNGPKTL 643
Query: 217 CNACG 221
CNACG
Sbjct: 644 CNACG 658
>TC88293 similar to GP|16323057|gb|AAL15263.1 AT5g57660/MRI1_1 {Arabidopsis
thaliana}, partial (30%)
Length = 1454
Score = 45.8 bits (107), Expect = 2e-05
Identities = 25/59 (42%), Positives = 34/59 (57%)
Frame = +2
Query: 109 KGINDPSQSSNLSRRFASLVRFREKRKERCFEKKIRYTCRKEVAQRMHRKNGQFASLKE 167
+G+ +Q + R A ++R+REKRK R FEK IRY RK A+ R G+FA E
Sbjct: 641 QGVQGATQLCGMDRE-ARVMRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTE 814
>TC81215 similar to GP|17064972|gb|AAL32640.1 Unknown protein {Arabidopsis
thaliana}, partial (14%)
Length = 938
Score = 45.4 bits (106), Expect = 3e-05
Identities = 21/38 (55%), Positives = 22/38 (57%)
Frame = +3
Query: 193 CQHCGTSEKSTPAMRRGPAGPRSLCNACGLMWANKGTL 230
C HCG + STP R GP LCNACG W KGTL
Sbjct: 447 CFHCGVT--STPLWRNGPPEKPILCNACGSRWRTKGTL 554
>AW256569 similar to GP|10177426|dbj GATA-binding transcription factor-like
protein {Arabidopsis thaliana}, partial (20%)
Length = 613
Score = 45.1 bits (105), Expect = 4e-05
Identities = 18/33 (54%), Positives = 23/33 (69%)
Frame = -3
Query: 190 ERRCQHCGTSEKSTPAMRRGPAGPRSLCNACGL 222
+RRC HC + TP R GP GP++LCNACG+
Sbjct: 512 QRRCSHCHVQK--TPQWRAGPLGPKTLCNACGV 420
>CA921267 homologue to GP|10177426|dbj GATA-binding transcription factor-like
protein {Arabidopsis thaliana}, partial (20%)
Length = 694
Score = 45.1 bits (105), Expect = 4e-05
Identities = 20/51 (39%), Positives = 29/51 (56%)
Frame = -1
Query: 191 RRCQHCGTSEKSTPAMRRGPAGPRSLCNACGLMWANKGTLRDLSKAAKTPY 241
RRC HCG ++ TP R GP G ++LCNACG+ + + L + A +
Sbjct: 538 RRCSHCGVTK--TPQWRSGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTF 392
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.311 0.128 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,317,521
Number of Sequences: 36976
Number of extensions: 136526
Number of successful extensions: 691
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of query: 354
length of database: 9,014,727
effective HSP length: 97
effective length of query: 257
effective length of database: 5,428,055
effective search space: 1395010135
effective search space used: 1395010135
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)
Lotus: description of TM0100b.1