TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0100a.14
         (90 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC78124 similar to GP|21592711|gb|AAM64660.1 unknown {Arabidopsi...   153  1e-38
TC91619 similar to GP|21592711|gb|AAM64660.1 unknown {Arabidopsi...   143  1e-35
TC91602 similar to GP|17902570|emb|CAC81927. putative WD-repeat ...    25  6.7
BG452068                                                               24  8.8

>TC78124 similar to GP|21592711|gb|AAM64660.1 unknown {Arabidopsis
           thaliana}, partial (86%)
          Length = 559

 Score =  153 bits (386), Expect = 1e-38
 Identities = 74/87 (85%), Positives = 82/87 (94%)
 Frame = +2

Query: 1   MNVEEEVQRLKEEITRLGSVQTDGSYKVTFGTLFHDDRCANIFEALVGTLRAAKKRKIVA 60
           MNVEEEV RLKEEI RLG +Q+DGSYKVTFGTLFHDD+CANIFEALVGTLRAAKKRK++ 
Sbjct: 50  MNVEEEVGRLKEEIKRLGKLQSDGSYKVTFGTLFHDDQCANIFEALVGTLRAAKKRKVLT 229

Query: 61  YDGELLLQGVHDNVEITLNPSPAAPAA 87
           Y+GELLLQGVHDNVEITLNP+PAA A+
Sbjct: 230 YEGELLLQGVHDNVEITLNPTPAAAAS 310


>TC91619 similar to GP|21592711|gb|AAM64660.1 unknown {Arabidopsis
           thaliana}, partial (76%)
          Length = 670

 Score =  143 bits (361), Expect = 1e-35
 Identities = 70/83 (84%), Positives = 77/83 (92%)
 Frame = +3

Query: 4   EEEVQRLKEEITRLGSVQTDGSYKVTFGTLFHDDRCANIFEALVGTLRAAKKRKIVAYDG 63
           +  ++ L+EEI RLG+VQTDGS KVTFGTLFHDDRCANIFEALVGTLRAAKKRK+VAYDG
Sbjct: 63  KRRLKSLREEIKRLGNVQTDGSCKVTFGTLFHDDRCANIFEALVGTLRAAKKRKVVAYDG 242

Query: 64  ELLLQGVHDNVEITLNPSPAAPA 86
           ELLLQGVHDNVEITLNP+PAA A
Sbjct: 243 ELLLQGVHDNVEITLNPAPAAAA 311


>TC91602 similar to GP|17902570|emb|CAC81927. putative WD-repeat protein
           {Silene latifolia}, partial (60%)
          Length = 1070

 Score = 24.6 bits (52), Expect = 6.7
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 36  DDRCANIFEALVGTLRAAKKRKIVAYDGEL 65
           DD C  +++A VG+  A K  K  A+DG++
Sbjct: 902 DDSCLILWDARVGSFPAVKVEK--AHDGDV 985


>BG452068 
          Length = 468

 Score = 24.3 bits (51), Expect = 8.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 58  IVAYDGELLLQGVHDNVEITLNPSPAAPAAAVN 90
           I+ Y  ELL++  H N+ ++ N SPA     +N
Sbjct: 449 ILLYLKELLVKSAHMNLLLSTNLSPAIVLFLIN 351


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.316    0.134    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,034,488
Number of Sequences: 36976
Number of extensions: 19444
Number of successful extensions: 63
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of query: 90
length of database: 9,014,727
effective HSP length: 66
effective length of query: 24
effective length of database: 6,574,311
effective search space: 157783464
effective search space used: 157783464
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)