BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0098c.1
(78 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC77245 similar to GP|6630556|gb|AAF19575.1| putative alpha-L-ar... 88 7e-19
TC93206 similar to GP|13398412|gb|AAK21879.1 arabinoxylan arabin... 62 4e-11
TC83833 28 0.50
TC84663 similar to SP|O48670|RERA_ARATH RER1A protein (AtRER1A).... 28 0.85
TC78416 similar to PIR|F96705|F96705 unknown protein 73543-7230... 26 2.5
TC78415 similar to PIR|F96705|F96705 unknown protein 73543-7230... 26 2.5
TC93751 similar to GP|9293900|dbj|BAB01803.1 emb|CAB62463.1~gene... 25 5.5
AW257087 homologue to GP|6683126|dbj KIAA0339 protein {Homo sapi... 25 5.5
BG449743 similar to OMNI|NT01MC2447 Leucine Rich Repeat putativ... 24 9.4
TC76898 similar to GP|21593056|gb|AAM65005.1 GSH-dependent dehyd... 24 9.4
>TC77245 similar to GP|6630556|gb|AAF19575.1| putative
alpha-L-arabinofuranosidase {Arabidopsis thaliana},
partial (89%)
Length = 2351
Score = 87.8 bits (216), Expect = 7e-19
Identities = 42/78 (53%), Positives = 58/78 (73%), Gaps = 1/78 (1%)
Frame = +2
Query: 2 VNFGSGSESFRISINGLK-SKVKQSGSRKTVLTAANVMDENSFSEPNKIVPQQTPIEGAS 60
VNFG+ + + +IS NGL + ++ SGS KTVLT+ N+MDENSFS+P K++P Q+ ++
Sbjct: 1928 VNFGTSAVNLKISFNGLDPNSLQSSGSTKTVLTSTNLMDENSFSQPKKVIPIQSLLQSVG 2107
Query: 61 TDMKVELPPHSVTSFDLL 78
DM V +PPHS TSFDLL
Sbjct: 2108 KDMNVIVPPHSFTSFDLL 2161
>TC93206 similar to GP|13398412|gb|AAK21879.1 arabinoxylan
arabinofuranohydrolase isoenzyme AXAH-I {Hordeum
vulgare}, partial (6%)
Length = 642
Score = 62.0 bits (149), Expect = 4e-11
Identities = 34/77 (44%), Positives = 45/77 (58%)
Frame = +1
Query: 1 VVNFGSGSESFRISINGLKSKVKQSGSRKTVLTAANVMDENSFSEPNKIVPQQTPIEGAS 60
+ N F+ISI G SK GS KTVLT N +DENSF+EP KI PQ +P++
Sbjct: 205 IANMRKTQVDFKISIQGFASK-NLKGSTKTVLTG-NELDENSFAEPKKIAPQTSPLQNPG 378
Query: 61 TDMKVELPPHSVTSFDL 77
+M V + P S+T D+
Sbjct: 379 NEMNVIVQPTSLTILDM 429
>TC83833
Length = 406
Score = 28.5 bits (62), Expect = 0.50
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +1
Query: 9 ESFRISINGLKSKVKQSGSRKTVLTAANVMDENSFSEPNKIVPQQTPIEGAST 61
E+ +++ L SK+K GS+ T +V S +EP I +TPI+ T
Sbjct: 130 EAAKVASQLLFSKLKAQGSKLRTKTLEDVRKSTSKTEPKLIGFDETPIDVKDT 288
>TC84663 similar to SP|O48670|RERA_ARATH RER1A protein (AtRER1A). [Mouse-ear
cress] {Arabidopsis thaliana}, partial (81%)
Length = 802
Score = 27.7 bits (60), Expect = 0.85
Identities = 23/68 (33%), Positives = 32/68 (46%), Gaps = 3/68 (4%)
Frame = +1
Query: 11 FRISINGLKSKV---KQSGSRKTVLTAANVMDENSFSEPNKIVPQQTPIEGASTDMKVEL 67
FR S++ S K S S +TVL + + + FS I P TP+ + + EL
Sbjct: 184 FRSSLSSTSSASTY*KASTSLRTVLAFTSSISSSVFSPLRLIPPSPTPLTVLLSPL--EL 357
Query: 68 PPHSVTSF 75
P SV SF
Sbjct: 358 PMSSVLSF 381
>TC78416 similar to PIR|F96705|F96705 unknown protein 73543-72303
[imported] - Arabidopsis thaliana, partial (35%)
Length = 833
Score = 26.2 bits (56), Expect = 2.5
Identities = 12/28 (42%), Positives = 18/28 (63%)
Frame = +1
Query: 51 PQQTPIEGASTDMKVELPPHSVTSFDLL 78
P+ T + G ST MKV PH++T +L+
Sbjct: 208 PRLTLVSGRSTKMKVLDWPHTITVLNLI 291
>TC78415 similar to PIR|F96705|F96705 unknown protein 73543-72303
[imported] - Arabidopsis thaliana, partial (82%)
Length = 887
Score = 26.2 bits (56), Expect = 2.5
Identities = 12/28 (42%), Positives = 18/28 (63%)
Frame = +1
Query: 51 PQQTPIEGASTDMKVELPPHSVTSFDLL 78
P+ T + G ST MKV PH++T +L+
Sbjct: 613 PRLTLVSGRSTKMKVLDWPHTITVLNLI 696
>TC93751 similar to GP|9293900|dbj|BAB01803.1
emb|CAB62463.1~gene_id:MVE11.13~similar to unknown
protein {Arabidopsis thaliana}, partial (7%)
Length = 1166
Score = 25.0 bits (53), Expect = 5.5
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 35 ANVMDENSFSEPNKIVPQQTPIEGAST 61
A + N+F EPN+I+ TP+ S+
Sbjct: 727 AENLKSNNFQEPNQILESLTPVSTMSS 807
>AW257087 homologue to GP|6683126|dbj KIAA0339 protein {Homo sapiens},
partial (2%)
Length = 466
Score = 25.0 bits (53), Expect = 5.5
Identities = 16/56 (28%), Positives = 27/56 (47%)
Frame = +1
Query: 6 SGSESFRISINGLKSKVKQSGSRKTVLTAANVMDENSFSEPNKIVPQQTPIEGAST 61
S S+S S + S S S + ++++ D+ E K V ++TP + AST
Sbjct: 289 SDSDSSSSSSSSSSSSSSSSSSSSSSSSSSSNSDDEEEEEEAKPVVKKTPAKSAST 456
>BG449743 similar to OMNI|NT01MC2447 Leucine Rich Repeat putative
{Magnetococcus sp. MC-1}, partial (3%)
Length = 452
Score = 24.3 bits (51), Expect = 9.4
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 8 SESFRISINGLKSKVKQSGSRKTVLTAANVMDENS 42
+E RIS L+ V+ SG R VL + +EN+
Sbjct: 153 TEVERISTEQLRQGVELSGLRNDVLRGNRISEENN 49
>TC76898 similar to GP|21593056|gb|AAM65005.1 GSH-dependent dehydroascorbate
reductase 1 putative {Arabidopsis thaliana}, partial
(98%)
Length = 971
Score = 24.3 bits (51), Expect = 9.4
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 7 GSESFRISINGLKSKVKQSGSRKTVLTAANVMDEN 41
GS F + LKSK G+ + +L N +DE+
Sbjct: 337 GSNIFASFSSFLKSKDSNDGTEQALLAELNALDEH 441
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.308 0.126 0.336
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,713,223
Number of Sequences: 36976
Number of extensions: 13893
Number of successful extensions: 80
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of query: 78
length of database: 9,014,727
effective HSP length: 54
effective length of query: 24
effective length of database: 7,018,023
effective search space: 168432552
effective search space used: 168432552
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 51 (24.3 bits)
Lotus: description of TM0098c.1