BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0098b.3
(287 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF645369 37 0.007
BG647160 homologue to GP|15004435|gb| maturase {Ionopsis satyrio... 34 0.057
BE941328 33 0.097
TC81092 similar to GP|15810369|gb|AAL07072.1 unknown protein {Ar... 33 0.17
BE999344 similar to PIR|T29150|T291 hypothetical protein F47B3.4... 33 0.17
TC90353 weakly similar to GP|9759609|dbj|BAB11551.1 gene_id:MNA5... 32 0.28
TC82226 similar to PIR|T48615|T48615 hypothetical protein F18O22... 32 0.37
TC81252 similar to PIR|T52624|T52624 b-Zip DNA binding protein [... 32 0.37
TC85361 similar to PIR|T48978|T48978 hypothetical protein F14D17... 32 0.37
BG449434 31 0.48
BG587253 homologue to GP|9944648|gb|AA AMV125 {Amsacta moorei en... 31 0.48
BG646469 similar to GP|10177240|db emb|CAB89309.1~gene_id:MRN17.... 31 0.63
TC86145 homologue to GP|10334499|emb|CAC10211. hypothetical prot... 31 0.63
TC80612 similar to PIR|T52373|T52373 homeobox protein THOM1 [imp... 31 0.63
TC81969 similar to GP|6523547|emb|CAB62280.1 hydroxyproline-rich... 30 0.82
TC85372 similar to GP|14335060|gb|AAK59794.1 AT5g10780/T30N20_50... 30 1.1
TC85338 homologue to PIR|H96836|H96836 unknown protein T21F11.17... 30 1.1
TC85334 similar to PIR|C84451|C84451 probable ubiquinone biosynt... 30 1.1
TC80119 weakly similar to GP|15982797|gb|AAL09746.1 AT5g35440/MO... 30 1.1
TC78916 similar to GP|7267777|emb|CAB81180.1 predicted protein o... 30 1.4
>BF645369
Length = 635
Score = 37.4 bits (85), Expect = 0.007
Identities = 23/75 (30%), Positives = 36/75 (47%)
Frame = +2
Query: 119 KALLSSSSSSLSLSHPPPPPPSFTIATIVVVAIATGSITASNSTVVITNTHCHHHPPLMP 178
KA L +++ S S PPPPPP FT+ ++ + N T+ + T+ H+H P
Sbjct: 5 KASLIAATPSYSFI-PPPPPPPFTLVIDSLMNHDASKPRSKNHTISYSTTNIHNH--TFP 175
Query: 179 LFITEVTHTNIAPRK 193
FI H P++
Sbjct: 176 SFILHSLHLR*HPKE 220
>BG647160 homologue to GP|15004435|gb| maturase {Ionopsis satyrioides},
partial (2%)
Length = 780
Score = 34.3 bits (77), Expect = 0.057
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +1
Query: 35 IIRYSFSEWVASFSSFFGGSCSL-YVELLAKKHGLLLDINLGYRWVICESDSTTVIHLLE 93
+IR S ++ FS F ++ + EL L L I+L ++C SDS ++L++
Sbjct: 385 VIRNYLSTYITGFSGFISIYQNIMFAELTTLHQSLKLAISLNIEEMVCYSDSLLTVNLIK 564
Query: 94 ALAMPHPLYDVL 105
H +Y VL
Sbjct: 565 EDISQHHVYAVL 600
>BE941328
Length = 505
Score = 33.5 bits (75), Expect = 0.097
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +3
Query: 35 IIRYSFSEWVASFSSFFGGSCSLY-VELLAKKHGLLLDINLGYRWVICESDSTTVIHLL 92
I+R S S +++SFS F S + +L A GL + I+L V+C SDS ++L+
Sbjct: 15 ILRNSASLFISSFSGFIPNSTDIL*AKLTAIHQGLNMIIDLNMNDVMCYSDSLLAVNLI 191
>TC81092 similar to GP|15810369|gb|AAL07072.1 unknown protein {Arabidopsis
thaliana}, partial (38%)
Length = 907
Score = 32.7 bits (73), Expect = 0.17
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Frame = -3
Query: 123 SSSSSSLSLSHPPPPPPSFTIATIVVVAIATGSITASNSTVVITN------THCHHHPPL 176
S+ S+ +S PPPPPP + I+ + + T S+ S +++I+ TH + +
Sbjct: 374 SAKSNPCIVSTPPPPPP*ESNG*ILPIPLPTFSVFLSPGSLLISKTKLSFLTHAAYGNKV 195
Query: 177 MPLFIT 182
P FIT
Sbjct: 194 TPFFIT 177
>BE999344 similar to PIR|T29150|T291 hypothetical protein F47B3.4 -
Caenorhabditis elegans, partial (7%)
Length = 596
Score = 32.7 bits (73), Expect = 0.17
Identities = 24/68 (35%), Positives = 34/68 (49%)
Frame = +2
Query: 130 SLSHPPPPPPSFTIATIVVVAIATGSITASNSTVVITNTHCHHHPPLMPLFITEVTHTNI 189
SL HPPPPPPS+ + + + T S S+S + T H P P F++ H+
Sbjct: 11 SLLHPPPPPPSY-FPPFLPITLLTNS*PPSHS-ISSTKNSPHFTP---PPFLSTPPHSIK 175
Query: 190 APRKHVTS 197
P H+TS
Sbjct: 176 QP--HLTS 193
>TC90353 weakly similar to GP|9759609|dbj|BAB11551.1 gene_id:MNA5.1~unknown
protein {Arabidopsis thaliana}, partial (13%)
Length = 1119
Score = 32.0 bits (71), Expect = 0.28
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = -2
Query: 140 SFTIATIVVVAIATGSITASNSTVVITNTHCHHHPPLMPLFITEVTHTNIAPRKHVTS 197
S IA+ ++ +AT + N ++ N HC PL + + E+ H I RKH S
Sbjct: 851 SMDIASTILGTLAT---SCPNYGIIEKNHHCKRLGPLKAVSVLEIYHQGIQMRKHERS 687
>TC82226 similar to PIR|T48615|T48615 hypothetical protein F18O22.210 -
Arabidopsis thaliana, partial (63%)
Length = 1300
Score = 31.6 bits (70), Expect = 0.37
Identities = 33/114 (28%), Positives = 53/114 (45%), Gaps = 20/114 (17%)
Frame = -2
Query: 103 DVLNKPTINDMASQVDKALLSSSSSSLSLSHPPPPPP----------SFTIATIVVVAIA 152
D+++ N S+ +LSS+S L +SH P P P +FTIA+IV +
Sbjct: 693 DIISVKFTN*KLSKARAGILSSNS--LIISHGPSPTPTKTIDSGYSLAFTIASIVFFS*E 520
Query: 153 TGSITASNSTVVIT-----NTHCHHHPPL-----MPLFITEVTHTNIAPRKHVT 196
S+ S ST+++T + + PPL MP+ + +A R+H T
Sbjct: 519 L-SLPFSVSTLLVTCPSAIISET*YWPPLFSTIVMPISMIGANEVGLASRRHGT 361
>TC81252 similar to PIR|T52624|T52624 b-Zip DNA binding protein [imported] -
Arabidopsis thaliana, partial (48%)
Length = 1221
Score = 31.6 bits (70), Expect = 0.37
Identities = 17/42 (40%), Positives = 24/42 (56%)
Frame = +3
Query: 122 LSSSSSSLSLSHPPPPPPSFTIATIVVVAIATGSITASNSTV 163
L +SSS+ + + PPPPPS T+ VA S T S +T+
Sbjct: 90 LPTSSSAAASTASPPPPPSPANPTLTTVAPTPKSTTVSPTTL 215
>TC85361 similar to PIR|T48978|T48978 hypothetical protein F14D17.90 -
Arabidopsis thaliana, partial (90%)
Length = 904
Score = 31.6 bits (70), Expect = 0.37
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +3
Query: 134 PPPPPPSFTIATIVVVAI 151
PPPPPPSF+++T VV +
Sbjct: 60 PPPPPPSFSVSTAVVTLL 113
>BG449434
Length = 673
Score = 31.2 bits (69), Expect = 0.48
Identities = 29/91 (31%), Positives = 43/91 (46%), Gaps = 14/91 (15%)
Frame = +1
Query: 104 VLNKPTINDMASQVDKALLSSSSSSLSLSHPPPPP---------PSFTIATIVVVAIATG 154
+L+ P N +A + K +S SSS L + PP PSF I +VVA+ T
Sbjct: 22 LLSTPLFNTIAHGLTKLSMSCSSS*LLVLPPPIHMLTSSN*NLLPSFLI---IVVAVITT 192
Query: 155 SITASNSTVV-----ITNTHCHHHPPLMPLF 180
T SNST++ +T+ + P + LF
Sbjct: 193 QPTHSNSTLLNSPSQLTHPNLKSKPQQLSLF 285
>BG587253 homologue to GP|9944648|gb|AA AMV125 {Amsacta moorei
entomopoxvirus}, partial (20%)
Length = 606
Score = 31.2 bits (69), Expect = 0.48
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 7/121 (5%)
Frame = -2
Query: 21 WMKMQSSNLMSVDDIIRYS------FSEWVASFSSFFGGSCSLYVELLAKKHGLLLDINL 74
W + S+++ V II S FSE +F +F G C +LL G LD L
Sbjct: 380 W*LIFKSSIIVVSRIIETSVIFLLLFSERNFAFGIYFAGYC--VGDLLGPVIGGCLDQYL 207
Query: 75 GYRWVI-CESDSTTVIHLLEALAMPHPLYDVLNKPTINDMASQVDKALLSSSSSSLSLSH 133
G+RW+ + +++ LL + +P Y +P+ + + ++LLS S + L+L
Sbjct: 206 GWRWIYWFLTIYVSLLLLLILIFVPETHY---RRPS-SSSELPLSRSLLSRSQNKLNLFK 39
Query: 134 P 134
P
Sbjct: 38 P 36
>BG646469 similar to GP|10177240|db emb|CAB89309.1~gene_id:MRN17.16~similar
to unknown protein {Arabidopsis thaliana}, partial (40%)
Length = 663
Score = 30.8 bits (68), Expect = 0.63
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +2
Query: 133 HPPPPPPSFTIATIVVVAIA-TGSITASNSTVVITNTHC 170
HPPPP SF I + + I SI +SN N+HC
Sbjct: 527 HPPPPLESFEIPPVSIPRILHQDSIFSSNIDTTNANSHC 643
>TC86145 homologue to GP|10334499|emb|CAC10211. hypothetical protein {Cicer
arietinum}, partial (91%)
Length = 1311
Score = 30.8 bits (68), Expect = 0.63
Identities = 19/46 (41%), Positives = 26/46 (56%)
Frame = -2
Query: 115 SQVDKALLSSSSSSLSLSHPPPPPPSFTIATIVVVAIATGSITASN 160
S + K SSSSS + L PPPP T+A ++VA+ + SI N
Sbjct: 203 STLFKLECSSSSSRM*LLDLTPPPPEPTLAVPLLVAVVSFSIGIRN 66
>TC80612 similar to PIR|T52373|T52373 homeobox protein THOM1 [imported] -
tomato, partial (35%)
Length = 622
Score = 30.8 bits (68), Expect = 0.63
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +1
Query: 92 LEALAMPHPLYDVLNKPTINDMASQVDKALLSSSSSSLSLSHPP 135
L AL + LY +N PT M ++ +SS+SSS + + PP
Sbjct: 202 LRALKLSPQLYMQMNPPTTLTMCPSCERVAVSSASSSSAAAAPP 333
>TC81969 similar to GP|6523547|emb|CAB62280.1 hydroxyproline-rich
glycoprotein DZ-HRGP {Volvox carteri f. nagariensis},
partial (11%)
Length = 556
Score = 30.4 bits (67), Expect = 0.82
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = -2
Query: 115 SQVDKALLSSSSSSLSLSHPPPPPPSFT 142
S V L+ SSSS PPPPPPSF+
Sbjct: 390 SPVSSYSLNPSSSSPPPPSPPPPPPSFS 307
>TC85372 similar to GP|14335060|gb|AAK59794.1 AT5g10780/T30N20_50
{Arabidopsis thaliana}, partial (83%)
Length = 1240
Score = 30.0 bits (66), Expect = 1.1
Identities = 20/56 (35%), Positives = 25/56 (43%)
Frame = +3
Query: 134 PPPPPPSFTIATIVVVAIATGSITASNSTVVITNTHCHHHPPLMPLFITEVTHTNI 189
PPPPPPSF+++ VV T HH PL LFI T +N+
Sbjct: 48 PPPPPPSFSVSPAVV-------------------TLLHHLHPL--LFICNYTLSNL 152
>TC85338 homologue to PIR|H96836|H96836 unknown protein T21F11.17 [imported]
- Arabidopsis thaliana, partial (95%)
Length = 1214
Score = 30.0 bits (66), Expect = 1.1
Identities = 19/56 (33%), Positives = 25/56 (43%)
Frame = +2
Query: 134 PPPPPPSFTIATIVVVAIATGSITASNSTVVITNTHCHHHPPLMPLFITEVTHTNI 189
PPPPPPSF+++ VV + HH PL LFI T +N+
Sbjct: 41 PPPPPPSFSVSPAVVALL-------------------HHLHPL--LFICNYTLSNL 145
>TC85334 similar to PIR|C84451|C84451 probable ubiquinone biosynthesis
protein [imported] - Arabidopsis thaliana, partial (92%)
Length = 1349
Score = 30.0 bits (66), Expect = 1.1
Identities = 20/56 (35%), Positives = 25/56 (43%)
Frame = +1
Query: 134 PPPPPPSFTIATIVVVAIATGSITASNSTVVITNTHCHHHPPLMPLFITEVTHTNI 189
PPPPPPSF+++ VV T HH PL LFI T +N+
Sbjct: 49 PPPPPPSFSVSPAVV-------------------TLLHHLHPL--LFICNYTLSNL 153
>TC80119 weakly similar to GP|15982797|gb|AAL09746.1 AT5g35440/MOK9_2
{Arabidopsis thaliana}, partial (9%)
Length = 852
Score = 30.0 bits (66), Expect = 1.1
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = +2
Query: 125 SSSSLSLSHPPPPPPSFTIATIVVVAIATGSITASN 160
SSSSLSLS P P PS ++ + +A+ + +T+S+
Sbjct: 200 SSSSLSLSSPKPFQPSISVFQFLDLAMESRDLTSSS 307
>TC78916 similar to GP|7267777|emb|CAB81180.1 predicted protein of unknown
function {Arabidopsis thaliana}, partial (79%)
Length = 1941
Score = 29.6 bits (65), Expect = 1.4
Identities = 19/47 (40%), Positives = 24/47 (50%), Gaps = 1/47 (2%)
Frame = +1
Query: 111 NDMASQVDKALLSSSSSSLSLSHPPPPPPSFTIATI-VVVAIATGSI 156
ND A Q L S SSS S PPPPP I + V++ +GS+
Sbjct: 442 NDNADQNTHLLSQSQSSSQSEPPLPPPPPGLAWKLIKLPVSVISGSL 582
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.319 0.134 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,763,804
Number of Sequences: 36976
Number of extensions: 205625
Number of successful extensions: 4750
Number of sequences better than 10.0: 136
Number of HSP's better than 10.0 without gapping: 2858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4006
length of query: 287
length of database: 9,014,727
effective HSP length: 95
effective length of query: 192
effective length of database: 5,502,007
effective search space: 1056385344
effective search space used: 1056385344
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0098b.3