BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0093b.4
(565 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC90874 similar to PIR|T52076|T52076 ABI3-interacting protein ai... 296 e-140
TC82857 similar to PIR|T52076|T52076 ABI3-interacting protein ai... 170 1e-42
TC92741 similar to GP|10281006|dbj|BAB13743. pseudo-response reg... 108 5e-24
TC83688 weakly similar to GP|10281000|dbj|BAB13741. pseudo-respo... 105 4e-23
CB891265 weakly similar to PIR|T52076|T520 ABI3-interacting prot... 77 5e-21
TC79389 similar to GP|14189890|dbj|BAB55874. response regulator ... 92 4e-19
TC78934 similar to GP|14189890|dbj|BAB55874. response regulator ... 92 5e-19
TC86792 similar to GP|10281004|dbj|BAB13742. pseudo-response reg... 78 8e-15
TC88177 homologue to GP|10281004|dbj|BAB13742. pseudo-response r... 70 2e-12
TC76565 similar to GP|15810171|gb|AAL06987.1 AT3g16857/MUH15_1 {... 69 6e-12
TC92294 similar to GP|10281006|dbj|BAB13743. pseudo-response reg... 68 8e-12
TC80371 similar to GP|14326543|gb|AAK60316.1 AT4g18020/T6K21_200... 67 1e-11
BQ147902 similar to PIR|C96700|C96 protein F12A21.15 [imported] ... 67 2e-11
AL367049 similar to GP|13661174|dbj response regulator 8 {Zea ma... 66 4e-11
TC81494 similar to GP|13173408|gb|AAK14395.1 response regulator ... 65 9e-11
TC78129 similar to PIR|T47764|T47764 responce reactor 4 - Arabid... 62 6e-10
TC78669 similar to GP|4091806|gb|AAC99310.1| CONSTANS-like prote... 59 7e-09
TC79908 similar to GP|14326543|gb|AAK60316.1 AT4g18020/T6K21_200... 57 2e-08
TC87753 similar to GP|4091806|gb|AAC99310.1| CONSTANS-like prote... 56 4e-08
CB065309 similar to GP|15157114|gb AGR_C_3618p {Agrobacterium tu... 55 7e-08
>TC90874 similar to PIR|T52076|T52076 ABI3-interacting protein aip1
[imported] - Arabidopsis thaliana, partial (19%)
Length = 1257
Score = 296 bits (759), Expect(2) = e-140
Identities = 141/197 (71%), Positives = 163/197 (82%)
Frame = +3
Query: 365 QGSLYPSNGSRGSKLEPSGMPAQHAYPYYYNSGVVNHVMLPSSAQLYQKNMQDIHSHANS 424
+G NGS GS+L SGMPAQHAYPYY GV NHVM+ S+ +YQKN+Q++ SH +S
Sbjct: 624 RGGSSKRNGSYGSELNQSGMPAQHAYPYYM-PGVANHVMMQSATHMYQKNIQNLQSHVSS 800
Query: 425 SMIAQYNHLAQCSPHANGMTSFPYYPMNICLQPGQVSTPHSWPSLGSSGSCEVNLSKADR 484
SMI+QYN L QC PHA GM +PY+PM+ICLQ GQVST H WPSLGSS SCE NL K DR
Sbjct: 801 SMISQYNQLPQCPPHATGMAPYPYFPMSICLQTGQVSTVHPWPSLGSSTSCEANLRKVDR 980
Query: 485 REAALMKFKQKRKDRCFDKKIRYVNRKRLAERRPRVRGQFVRKLSGVDVYLNGQPASADY 544
REAALMKF+QKRK+RCFDKKIRYVNRK+LAERRPRVRGQFVRKL+G++V LNGQPAS DY
Sbjct: 981 REAALMKFRQKRKERCFDKKIRYVNRKQLAERRPRVRGQFVRKLNGINVDLNGQPASTDY 1160
Query: 545 DEEEEEEEDNHVARDSS 561
D+E+EEEE+NH RDSS
Sbjct: 1161DDEDEEEEENHDTRDSS 1211
Score = 221 bits (564), Expect(2) = e-140
Identities = 120/208 (57%), Positives = 146/208 (69%), Gaps = 23/208 (11%)
Frame = +1
Query: 186 STTLFSDDTDDRSKRSTNPEAA----QQEPEVNV-----SISKAAAVIEELPGAQISECR 236
+ FSDDTDD KRS P+A Q++ E+++ SI+ AAAVIEE P +SE +
Sbjct: 16 NANFFSDDTDDMFKRSNYPDAGISIHQEQAEISIQQEEASIATAAAVIEEHPYVHVSEYQ 195
Query: 237 PNVPGISDRR--------------TGNFSSGPKKSELRIGESSAFFTYVKATTLKSNVQE 282
P+VPGISDRR T + GPKKSELRIGESSAFFTYVKATT+K N++E
Sbjct: 196 PDVPGISDRRRTGSSAPHPPCNRVTNSSFDGPKKSELRIGESSAFFTYVKATTMKRNLEE 375
Query: 283 IAHVDNHATTQVRVEDMNQACARQRVNDLKTHENQEMFESRSQEDLPSSNSFPDSFSIER 342
IAH+DN T VRVEDMNQAC++Q NDL HEN E ES SQ+DLP SNS PDSFS+ER
Sbjct: 376 IAHLDNSGTLLVRVEDMNQACSQQGGNDLIRHENGETIESHSQDDLPRSNSIPDSFSVER 555
Query: 343 SCTPPASVEVSQQKNFREEYYPQGSLYP 370
SCTPPAS+EVSQQ + +E +PQG ++P
Sbjct: 556 SCTPPASMEVSQQNSNHKEKHPQGVVHP 639
>TC82857 similar to PIR|T52076|T52076 ABI3-interacting protein aip1
[imported] - Arabidopsis thaliana, partial (11%)
Length = 818
Score = 170 bits (431), Expect = 1e-42
Identities = 86/131 (65%), Positives = 98/131 (74%)
Frame = +1
Query: 435 QCSPHANGMTSFPYYPMNICLQPGQVSTPHSWPSLGSSGSCEVNLSKADRREAALMKFKQ 494
Q PH GM FPYYPMN+CL P Q SWPS S S E LSK DRREAAL+KF+Q
Sbjct: 1 QVGPHTTGMMPFPYYPMNMCLHPAQ-----SWPSYRGSSSSEAKLSKVDRREAALIKFRQ 165
Query: 495 KRKDRCFDKKIRYVNRKRLAERRPRVRGQFVRKLSGVDVYLNGQPASADYDEEEEEEEDN 554
K+K+RCFDKKIRYVNRK+LAERRPRVRGQFV KL+GV+V LNGQP S +YDE EE+++
Sbjct: 166 KKKERCFDKKIRYVNRKQLAERRPRVRGQFVSKLNGVNVDLNGQPPSIEYDENEEDDQG- 342
Query: 555 HVARDSSLEDA 565
ARD S DA
Sbjct: 343 --ARDYSPRDA 369
>TC92741 similar to GP|10281006|dbj|BAB13743. pseudo-response regulator 5
{Arabidopsis thaliana}, partial (19%)
Length = 645
Score = 108 bits (270), Expect = 5e-24
Identities = 60/159 (37%), Positives = 85/159 (52%), Gaps = 4/159 (2%)
Frame = +3
Query: 2 ESEAEEILNLNSRENNCGGANSKSG----DAFIDRSKVRILLCDDDPKSSEEVFTLLVKC 57
E EE + + GG G + F+ + +R+LL + D + + + LL KC
Sbjct: 126 EKVREEEGSGGTESRGAGGGGEMKGLMRWEKFLPKMVLRVLLVEADDCTRQIITALLRKC 305
Query: 58 SYQVTPVRSARQVIDALNAEGQYIDIILAEVDLPIKKGMKLLKYLSRDKELRRIPVIMMS 117
+Y+V V + + L + ID+IL EVDLP G LL + + IPVIMMS
Sbjct: 306 NYKVAAVADGLKAWEILKGRPRSIDLILTEVDLPAISGYALLTLIMEHDICKSIPVIMMS 485
Query: 118 AKDEVPIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 156
++D V V KC+ GAADYLVKP+ NEL NLW H+W +
Sbjct: 486 SQDSVSTVYKCMLRGAADYLVKPIXINELRNLWQHVWEK 602
>TC83688 weakly similar to GP|10281000|dbj|BAB13741. pseudo-response
regulator 9 {Arabidopsis thaliana}, partial (27%)
Length = 687
Score = 105 bits (263), Expect = 4e-23
Identities = 62/199 (31%), Positives = 102/199 (51%), Gaps = 5/199 (2%)
Frame = +3
Query: 27 DAFIDRSKVRILLCDDDPKSSEEVFTLLVKCSYQVTPVRSARQVIDALNAEGQYIDIILA 86
+ F+ R V +LL + D + + +LL C Y+V V + + + + + +D++L
Sbjct: 48 EMFLPRKNVTVLLVESDRATRRLITSLLNNCHYKVIAVSNGSKAWEMMKMKAIDVDLVLT 227
Query: 87 EVDLPIKKGMKLLKYLSRDKELRRIPVIMMSAKDEVPIVVKCLRLGAADYLVKPLRTNEL 146
E++LP G LL + + R IPVIMMS++D V+KC+ GAAD+L+KP+R NEL
Sbjct: 228 EMELPAISGFALLSLIMEHEIGRNIPVIMMSSRDSRSTVMKCMCRGAADFLIKPVRKNEL 407
Query: 147 LNLWTHMWRRRRMLGLAEKNILSYDFDMVASDPSDANTNSTTLFSDDTDDRSKRSTNPEA 206
NLW H+WR+ V S P T++ + T+D RS + ++
Sbjct: 408 TNLWQHVWRKH-----------------VISRPLQNTTSAQSNLKIATEDNFPRSQSTDS 536
Query: 207 A-----QQEPEVNVSISKA 220
A Q+ E + +SK+
Sbjct: 537 ASVASSQKNNECSEKLSKS 593
>CB891265 weakly similar to PIR|T52076|T520 ABI3-interacting protein aip1
[imported] - Arabidopsis thaliana, partial (4%)
Length = 755
Score = 77.4 bits (189), Expect(2) = 5e-21
Identities = 40/71 (56%), Positives = 54/71 (75%)
Frame = +3
Query: 44 PKSSEEVFTLLVKCSYQVTPVRSARQVIDALNAEGQYIDIILAEVDLPIKKGMKLLKYLS 103
P EEV L++C +Q +SA +IDALNAEG++ID+ILA+V LP KKGM++ KY++
Sbjct: 87 PIPPEEVVAFLLRCCFQA---KSASHLIDALNAEGEHIDVILAKVGLP-KKGMRVFKYMA 254
Query: 104 RDKELRRIPVI 114
RDKEL RIP+I
Sbjct: 255 RDKELCRIPII 287
Score = 42.0 bits (97), Expect(2) = 5e-21
Identities = 19/31 (61%), Positives = 23/31 (73%)
Frame = +2
Query: 114 IMMSAKDEVPIVVKCLRLGAADYLVKPLRTN 144
++MS +D V +VVKCL GA DYLV PL TN
Sbjct: 395 LVMSTQDVVSVVVKCLGFGAVDYLVNPLCTN 487
>TC79389 similar to GP|14189890|dbj|BAB55874. response regulator 9 {Zea
mays}, partial (33%)
Length = 1532
Score = 92.4 bits (228), Expect = 4e-19
Identities = 61/190 (32%), Positives = 97/190 (50%)
Frame = +1
Query: 25 SGDAFIDRSKVRILLCDDDPKSSEEVFTLLVKCSYQVTPVRSARQVIDALNAEGQYIDII 84
SGD F +R+L DDDP + TLL +C Y VT A + L D++
Sbjct: 181 SGDRF--PIGMRVLAVDDDPTCLLVLETLLRRCQYHVTTTSQAITALTMLRENKDKFDLV 354
Query: 85 LAEVDLPIKKGMKLLKYLSRDKELRRIPVIMMSAKDEVPIVVKCLRLGAADYLVKPLRTN 144
+++V +P G KLL+ + + +L PVIM+SA + +V+K + GA DYL+KP+R
Sbjct: 355 ISDVHMPDMDGFKLLELVGLEMDL---PVIMLSAYGDTKLVMKGISHGACDYLLKPVRLE 525
Query: 145 ELLNLWTHMWRRRRMLGLAEKNILSYDFDMVASDPSDANTNSTTLFSDDTDDRSKRSTNP 204
EL N+W H+ R+++ EKN S D SD ++ SD+ +K+ +
Sbjct: 526 ELKNIWQHVIRKKKS-DPKEKNKTSKP-DKTTSDSGSGLRSAGAENSDENGKLTKKRKDQ 699
Query: 205 EAAQQEPEVN 214
+ + E + N
Sbjct: 700 DEDEDEDKEN 729
>TC78934 similar to GP|14189890|dbj|BAB55874. response regulator 9 {Zea
mays}, partial (25%)
Length = 1014
Score = 92.0 bits (227), Expect = 5e-19
Identities = 52/133 (39%), Positives = 75/133 (56%), Gaps = 2/133 (1%)
Frame = +2
Query: 27 DAFIDRSKV--RILLCDDDPKSSEEVFTLLVKCSYQVTPVRSARQVIDALNAEGQYIDII 84
D F DR + R+L DDDP S + TLL C Y VT A + L D++
Sbjct: 32 DDFSDRFPIGMRVLAVDDDPTSLLLLETLLRSCQYHVTTTSEAITALTMLQENIDMFDLV 211
Query: 85 LAEVDLPIKKGMKLLKYLSRDKELRRIPVIMMSAKDEVPIVVKCLRLGAADYLVKPLRTN 144
+AEV +P G+KLL+ + + +L PVIM+SA E +V+K + GA D+L+KP+R
Sbjct: 212 IAEVHMPDMDGLKLLELVGLEMDL---PVIMLSAHGETELVMKAISHGARDFLLKPVRLE 382
Query: 145 ELLNLWTHMWRRR 157
EL N+W H+ R +
Sbjct: 383 ELRNIWQHVIRNK 421
>TC86792 similar to GP|10281004|dbj|BAB13742. pseudo-response regulator 7
{Arabidopsis thaliana}, partial (32%)
Length = 2209
Score = 78.2 bits (191), Expect = 8e-15
Identities = 95/374 (25%), Positives = 153/374 (40%), Gaps = 40/374 (10%)
Frame = +1
Query: 196 DRSKRSTNPEAAQQEPEVNVSISKAAAVIEELPGAQISECRPNVPGISDRRTGNFSSGPK 255
D +S EA + P + +K EELP ++S RP + + +
Sbjct: 847 DSQMQSGEIEALNRRPNFSDIDNKGTNNDEELPSLELSLKRPR-----EVEEAGAAIQDE 1011
Query: 256 KSELRIGESSAFFTYVKATTLKSNVQEIAHVDNHATTQVRVEDMNQACARQRVNDLKTHE 315
++ LR + SAF Y K + ++ + V + + D+++H
Sbjct: 1012 RNVLRRSDQSAFSRYNATFNAKKSPTGCVGSNSPPNNSLEVTKKDSS------RDIQSHS 1173
Query: 316 -----NQEMFESRSQEDLPSSNSFPDSFSIERSCTPPASVEVSQQKNFREEYYP------ 364
NQ ++ + D+ S+ + ++F+ PA ++ + P
Sbjct: 1174 SGNPPNQNSNDASNNIDMGSTTN--NAFTKSAVIREPAEASTTKFLYQTSAFQPIKNSLM 1347
Query: 365 ---QGSLYPSNGSRGSKLEP----SGMPAQHAYPYYYN-SGVVN--HVMLPSSAQLYQKN 414
Q + +N + L P G Q + +Y N S V N H + P K
Sbjct: 1348 CTSQQVVSHNNEDTTTILAPPKIDKGSATQDFHHHYENHSNVANMQHQLPPEHDAESSKE 1527
Query: 415 MQDIHSHANSSMIAQ-----------YNHLAQCSPH-ANGM----TSFPYYPMNICLQPG 458
M + H SS + + N A S H +NG T+ NI G
Sbjct: 1528 MTVVAPHCGSSNMVKGPVEGNTGNYSINRSASGSNHGSNGQNGSSTAINAGGTNIDNNNG 1707
Query: 459 QVSTPHSWPSLGSSGSCEVNLSKADRREAALMKFKQKRKDR---CFDKKIRYVNRKRLAE 515
S + G+ V+ SK +REAAL+KF+QKRK+R CF K++RY +R++LAE
Sbjct: 1708 LAGNSGSGDASGNGSGNRVDQSKNFQREAALIKFRQKRKERKERCFHKQVRYQSRQKLAE 1887
Query: 516 RRPRVRGQFVRKLS 529
+RPR RGQFVR+ S
Sbjct: 1888 QRPRYRGQFVRQSS 1929
Score = 74.3 bits (181), Expect = 1e-13
Identities = 35/70 (50%), Positives = 46/70 (65%)
Frame = +3
Query: 87 EVDLPIKKGMKLLKYLSRDKELRRIPVIMMSAKDEVPIVVKCLRLGAADYLVKPLRTNEL 146
EV +P G+ LL + + +PVIMMS+ D + +V KCL GA D+LVKP+R NEL
Sbjct: 123 EVAMPGLSGIALLYKIMGHPTRKNVPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNEL 302
Query: 147 LNLWTHMWRR 156
NLW H+WRR
Sbjct: 303 KNLWQHVWRR 332
>TC88177 homologue to GP|10281004|dbj|BAB13742. pseudo-response regulator 7
{Arabidopsis thaliana}, partial (4%)
Length = 1310
Score = 70.1 bits (170), Expect = 2e-12
Identities = 35/71 (49%), Positives = 50/71 (70%)
Frame = +3
Query: 491 KFKQKRKDRCFDKKIRYVNRKRLAERRPRVRGQFVRKLSGVDVYLNGQPASADYDEEEEE 550
KF+QKRK+RCFDKK+RY +RK+LA++RPRVRGQFV+++ +D EEE +
Sbjct: 702 KFRQKRKERCFDKKVRYHSRKKLADQRPRVRGQFVKQI------------VSDTKEEEIK 845
Query: 551 EEDNHVARDSS 561
E + V+ D+S
Sbjct: 846 ESEELVSMDNS 878
>TC76565 similar to GP|15810171|gb|AAL06987.1 AT3g16857/MUH15_1 {Arabidopsis
thaliana}, partial (31%)
Length = 842
Score = 68.6 bits (166), Expect = 6e-12
Identities = 52/182 (28%), Positives = 86/182 (46%), Gaps = 20/182 (10%)
Frame = +2
Query: 82 DIILAEVDLPIKKGMKLLKYLSRDKELRRIPVIMMSAKDEVPIVVKCLRLGAADYLVKPL 141
DI++++V +P G KLL+++ + +L PVIMMSA D +V+K + GA DYL+KP+
Sbjct: 41 DIVISDVHMPDMDGFKLLEHIGLEMDL---PVIMMSADDGKSVVMKGVTHGACDYLIKPV 211
Query: 142 RTNELLNLWTHM-------WRRRRMLGLAE------KNILSYDFDMVASDPSDANTNSTT 188
R L N+W H+ W+ G A+ K D+ A++ + N+
Sbjct: 212 RIEALKNIWQHVVRKKKNEWKDTEQSGSADEGDRHPKASDDADYSSSANEGNWRNSRKRR 391
Query: 189 LFSDDTDDRSKRSTNPEAAQQEPEVNVSISKAAAVIEELPGAQISECRP-------NVPG 241
++ DDR ST ++P V S+ + + I + P NVPG
Sbjct: 392 DDEEEGDDRDDSST-----LKKPRVVWSVELHQQFVAAVDQLGIDKAVPKKILELMNVPG 556
Query: 242 IS 243
++
Sbjct: 557 LT 562
>TC92294 similar to GP|10281006|dbj|BAB13743. pseudo-response regulator 5
{Arabidopsis thaliana}, partial (7%)
Length = 772
Score = 68.2 bits (165), Expect = 8e-12
Identities = 31/52 (59%), Positives = 43/52 (82%)
Frame = +1
Query: 481 KADRREAALMKFKQKRKDRCFDKKIRYVNRKRLAERRPRVRGQFVRKLSGVD 532
++ +REAAL KF+ KRK+RCF+KK+RY +RK+ AE+R RV+GQFVRK+ D
Sbjct: 412 RSRQREAALTKFRLKRKERCFEKKVRYQSRKKQAEQRLRVKGQFVRKVQNDD 567
>TC80371 similar to GP|14326543|gb|AAK60316.1 AT4g18020/T6K21_200
{Arabidopsis thaliana}, partial (39%)
Length = 1352
Score = 67.4 bits (163), Expect = 1e-11
Identities = 57/233 (24%), Positives = 102/233 (43%), Gaps = 11/233 (4%)
Frame = +3
Query: 35 VRILLCDDDPKSSEEVFTLLVKCSYQVTPVRSARQVIDALNAEGQYIDIILAEVDLPIKK 94
+R+LL + D S+ E+ T L Y V+ + + + A+++ + + + EV +
Sbjct: 102 LRVLLLEGDNNSASEIRTKLESMDYNVSTFYNENEALSAISSSPKCFHVAIVEVSISCPD 281
Query: 95 GMKLLKYLSRDKELRRIPVIMMSAKDEVPIVVKCLRLGAADYLVKPLRTNELLNLWTHMW 154
G K+L K+L P IM S + ++KC+ LGA ++L KPL ++L N+W H+
Sbjct: 282 GG--FKFLENAKDL---PTIMTSNSQCINTMMKCIALGAVEFLTKPLSEDKLKNIWQHVV 446
Query: 155 RRRRMLGLAEKNILSYDFDMVASDPSDA------NTNSTTLFSDDTDDRSKRSTNPE--- 205
+ AE + LS V NT + S D D SK S N
Sbjct: 447 HKAFN---AEASALSESLKPVKESVESMLHLQTDNTLHESTISIDLDKVSKFSDNEHEHS 617
Query: 206 -AAQQEPEVNV-SISKAAAVIEELPGAQISECRPNVPGISDRRTGNFSSGPKK 256
A+ + P + + + A ++++ +C + ++ +G SG K
Sbjct: 618 AASDKYPAPSTPQLKQGARLVDD------GDCHEQTNCLIEKESGEHDSGECK 758
>BQ147902 similar to PIR|C96700|C96 protein F12A21.15 [imported] -
Arabidopsis thaliana, partial (19%)
Length = 363
Score = 67.0 bits (162), Expect = 2e-11
Identities = 39/113 (34%), Positives = 66/113 (57%)
Frame = +1
Query: 45 KSSEEVFTLLVKCSYQVTPVRSARQVIDALNAEGQYIDIILAEVDLPIKKGMKLLKYLSR 104
K S+ FT + + ++ R+ ++G Y DI++++V+ P G KLL+++
Sbjct: 10 KCSKNAFTE*PHVALAIEALKKLRE------SKGTY-DIVISDVNTPDMDGFKLLEHVGL 168
Query: 105 DKELRRIPVIMMSAKDEVPIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 157
+ +L PVIMMS E V+K ++ GA DYL+KP+R E+ N+W H+ R+R
Sbjct: 169 EMDL---PVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEVRNIWQHVLRKR 318
>AL367049 similar to GP|13661174|dbj response regulator 8 {Zea mays}, partial
(13%)
Length = 283
Score = 65.9 bits (159), Expect = 4e-11
Identities = 31/75 (41%), Positives = 49/75 (65%)
Frame = +2
Query: 82 DIILAEVDLPIKKGMKLLKYLSRDKELRRIPVIMMSAKDEVPIVVKCLRLGAADYLVKPL 141
D++L++V +P G KLL+++ + +L PVIMMS D V+K +R GA D+ +KP+
Sbjct: 59 DVVLSDVHMPDMDGYKLLEHVGLEMDL---PVIMMSVDDRTSTVMKGIRHGACDFFIKPV 229
Query: 142 RTNELLNLWTHMWRR 156
R EL N+W H+ R+
Sbjct: 230 RMEELRNIWQHVARK 274
>TC81494 similar to GP|13173408|gb|AAK14395.1 response regulator protein
{Dianthus caryophyllus}, partial (53%)
Length = 793
Score = 64.7 bits (156), Expect = 9e-11
Identities = 46/200 (23%), Positives = 94/200 (47%), Gaps = 13/200 (6%)
Frame = +1
Query: 30 IDRSKVRILLCDDDPKSSEEVFTLLVKCSYQVTPVRSARQVIDALN-------------A 76
+D +V +L DD + + LL + +VT V S + + L
Sbjct: 73 VDSQEVHVLAVDDSLVDRKVIERLLKISACKVTAVDSGIRALQFLGLVDEKETSESDAFV 252
Query: 77 EGQYIDIILAEVDLPIKKGMKLLKYLSRDKELRRIPVIMMSAKDEVPIVVKCLRLGAADY 136
G +D+++ + +P G +LLK + R IPV++MS+++ +P + +CL GA D+
Sbjct: 253 PGLKVDLVITDYCMPGMTGYELLKKIKESTTFRAIPVVIMSSENILPRIDRCLEEGAEDF 432
Query: 137 LVKPLRTNELLNLWTHMWRRRRMLGLAEKNILSYDFDMVASDPSDANTNSTTLFSDDTDD 196
+VKP++ +++ L +M + E N+ S D +++ ++ + N N ++
Sbjct: 433 IVKPVKLSDVKRLKGYMTTK-------EVNVGSQDTEVIVTN-NVGNDNDGDGVGIGINN 588
Query: 197 RSKRSTNPEAAQQEPEVNVS 216
+ K + + EP ++ S
Sbjct: 589 KRKLEEASDLSSSEPSISSS 648
>TC78129 similar to PIR|T47764|T47764 responce reactor 4 - Arabidopsis
thaliana, partial (62%)
Length = 1307
Score = 62.0 bits (149), Expect = 6e-10
Identities = 47/230 (20%), Positives = 102/230 (43%), Gaps = 19/230 (8%)
Frame = +1
Query: 33 SKVRILLCDDDPKSSEEVFTLLVKCSYQVTPVRSARQVIDAL------------------ 74
S+ +L DD + + LL SYQVT V S + ++ L
Sbjct: 397 SQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLCENDETNPNTPSVFPN 576
Query: 75 NAEGQYIDIILAEVDLPIKKGMKLLKYLSRDKELRRIPVIMMSAKDEVPIVVKCLRLGAA 134
N + +++++ + +P G LLK + LR IPV++MS+++ + +CL GA
Sbjct: 577 NHQEVEVNLVITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPSRINRCLEEGAE 756
Query: 135 DYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILSYDFDMVASDPS-DANTNSTTLFSDD 193
++ +KP+R ++L L HM + + E + +++ ++ A+ + + +
Sbjct: 757 EFFLKPVRLSDLNRLKPHMKKTKLKDQNQETEQKIENSEILENEEQHQASKSQHSHLESE 936
Query: 194 TDDRSKRSTNPEAAQQEPEVNVSISKAAAVIEELPGAQISECRPNVPGIS 243
+ +++ + QQ+ + + + +E+ ++ RP GI+
Sbjct: 937 SQTQTQLQAHSTIDQQQQSLQQANNNKRKSVEQSLSSETDRTRPRYSGIA 1086
>TC78669 similar to GP|4091806|gb|AAC99310.1| CONSTANS-like protein 2 {Malus
x domestica}, partial (54%)
Length = 1045
Score = 58.5 bits (140), Expect = 7e-09
Identities = 29/75 (38%), Positives = 47/75 (62%)
Frame = +1
Query: 458 GQVSTPHSWPSLGSSGSCEVNLSKADRREAALMKFKQKRKDRCFDKKIRYVNRKRLAERR 517
G V ++ P + + G V + REA +M++++KRK+R F+K IRY +RK AE R
Sbjct: 670 GVVPDANTVPEISNCGYGTVAVD----REARVMRYREKRKNRRFEKTIRYASRKAYAETR 837
Query: 518 PRVRGQFVRKLSGVD 532
PR++G+F ++ VD
Sbjct: 838 PRIKGRFAKRTDAVD 882
>TC79908 similar to GP|14326543|gb|AAK60316.1 AT4g18020/T6K21_200
{Arabidopsis thaliana}, partial (44%)
Length = 1599
Score = 56.6 bits (135), Expect = 2e-08
Identities = 34/119 (28%), Positives = 61/119 (50%)
Frame = +2
Query: 35 VRILLCDDDPKSSEEVFTLLVKCSYQVTPVRSARQVIDALNAEGQYIDIILAEVDLPIKK 94
+++LL + D S E+ L Y V+ + + A+++ + I + EV +
Sbjct: 332 LKVLLLEGDNTSVSEIRVKLEAMDYNVSIFCDVNEALSAVSSRPEDFHIAIVEVSSSSCE 511
Query: 95 GMKLLKYLSRDKELRRIPVIMMSAKDEVPIVVKCLRLGAADYLVKPLRTNELLNLWTHM 153
G ++L K+L P IM S D + ++KC+ LGA ++L KPL ++L N+W H+
Sbjct: 512 GG--FRFLENAKDL---PTIMTSNSDCLNTMMKCIALGAVEFLSKPLSEDKLRNIWQHV 673
>TC87753 similar to GP|4091806|gb|AAC99310.1| CONSTANS-like protein 2 {Malus
x domestica}, partial (57%)
Length = 1193
Score = 55.8 bits (133), Expect = 4e-08
Identities = 35/124 (28%), Positives = 66/124 (53%), Gaps = 14/124 (11%)
Frame = +2
Query: 418 IHSHANSSMIAQYNHLAQCSPHANGMTSFPYY--------PMNICLQP-GQVSTPHSWPS 468
+ SH+ ++ ++ H + + + F Y M++ + P G V T S+ S
Sbjct: 584 VQSHSKTATEHEHEHYSDINIDFSNSKPFTYNFNHTVSSPSMDVGVVPDGNVMTEISYCS 763
Query: 469 LGSSGSCEVNLS-----KADRREAALMKFKQKRKDRCFDKKIRYVNRKRLAERRPRVRGQ 523
++ + ++ A REA +M++++KRK+R F+K IRY +RK AE RPR++G+
Sbjct: 764 YQTTATETAPMTVAVPMTAVEREARVMRYREKRKNRRFEKTIRYASRKAYAETRPRIKGR 943
Query: 524 FVRK 527
F ++
Sbjct: 944 FAKR 955
>CB065309 similar to GP|15157114|gb AGR_C_3618p {Agrobacterium tumefaciens
str. C58 (Cereon)}, partial (83%)
Length = 627
Score = 55.1 bits (131), Expect = 7e-08
Identities = 34/120 (28%), Positives = 59/120 (48%), Gaps = 9/120 (7%)
Frame = +3
Query: 37 ILLCDDDPKSSEEVFTLLVKCSY--QVTPVRSARQVIDALNAEGQYID-------IILAE 87
ILL +D+P+ E L + +V +R +D L Y D ++L +
Sbjct: 21 ILLVEDNPRDLELTLLALERSQLANEVIVLRDGADALDYLLRRNAYADRDDGNPAVLLLD 200
Query: 88 VDLPIKKGMKLLKYLSRDKELRRIPVIMMSAKDEVPIVVKCLRLGAADYLVKPLRTNELL 147
+ LP G+++LK + ELR IP +M+++ E P +++ LG Y+VKP+ E +
Sbjct: 201 LKLPKVDGLEVLKEVRATPELRSIPTVMLTSSREEPDLLRAYELGVNAYVVKPVEFKEFV 380
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.313 0.129 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,623,005
Number of Sequences: 36976
Number of extensions: 215792
Number of successful extensions: 1259
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 1136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1211
length of query: 565
length of database: 9,014,727
effective HSP length: 101
effective length of query: 464
effective length of database: 5,280,151
effective search space: 2449990064
effective search space used: 2449990064
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0093b.4