BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0091b.8
(200 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC76490 weakly similar to GP|16555360|gb|AAL23724.1 cold acclima... 325 9e-90
TC76315 similar to GP|10121845|gb|AAG13395.1 cold acclimation pr... 312 5e-86
TC88203 similar to GP|10121845|gb|AAG13395.1 cold acclimation pr... 266 4e-72
AL371007 weakly similar to GP|10121845|gb| cold acclimation prot... 155 1e-38
TC76436 GP|13359451|dbj|BAB33421. putative senescence-associated... 79 1e-15
AL371008 similar to GP|11127595|dbj cold acclimation protein hom... 73 6e-14
TC78457 weakly similar to PIR|E86416|E86416 unknown protein 319... 59 1e-09
TC89992 auxin influx carrier protein [Medicago truncatula] 31 0.28
NP501869 NP501869|AY115844.1|AAM55305.1 auxin influx carrier pro... 30 0.81
TC87762 similar to GP|21537142|gb|AAM61483.1 unknown {Arabidopsi... 30 0.81
TC92930 similar to GP|13430332|gb|AAK25798.1 rubisco activase {Z... 30 0.81
TC90702 similar to GP|15028243|gb|AAK76710.1 unknown protein {Ar... 28 3.1
BG586655 similar to GP|23495458|db dehydratiion responsive eleme... 27 4.0
TC91020 similar to GP|23495458|dbj|BAC20183. dehydratiion respon... 27 4.0
AW696172 weakly similar to PIR|H96620|H96 hypothetical protein F... 27 5.3
TC78344 similar to GP|13540405|gb|AAK29456.1 histone H1 {Lens cu... 27 6.9
TC88837 similar to GP|23617012|dbj|BAC20708. putative translatio... 27 6.9
TC78451 similar to GP|9279625|dbj|BAB01083.1 gb|AAF23830.1~gene_... 27 6.9
TC77936 weakly similar to PIR|T52319|T52319 P-glycoprotein-like ... 26 9.0
TC76410 similar to GP|4689382|gb|AAD27878.1| chlorophyll a/b bin... 26 9.0
>TC76490 weakly similar to GP|16555360|gb|AAL23724.1 cold acclimation
protein WCOR413-like protein beta form {Triticum
aestivum}, partial (80%)
Length = 984
Score = 325 bits (832), Expect = 9e-90
Identities = 161/201 (80%), Positives = 183/201 (90%), Gaps = 1/201 (0%)
Frame = +3
Query: 1 MWKGMNFREAEAADLINSDFRDLSLAATKLANHAVNL-GVGFGFGASFFGLIAAIAAIYL 59
MW MNF+E EA ++NSDF+DLS AA+KLANHA+ L GVG GFGASFFG AA+AAIYL
Sbjct: 66 MWNRMNFQE-EAVQIMNSDFKDLSEAASKLANHAIKLAGVG-GFGASFFGFFAAVAAIYL 239
Query: 60 LVLDRTNWKTNILTGLLIPYIFFSLPSIIFNVFRGEIGKWIALVAIVLRIFIPKHFPDWL 119
LVLDRTNWKTNILT LLIPYIFFSLPS +F VFRGEIGKWIALVA+VLR+FIPKHFPDWL
Sbjct: 240 LVLDRTNWKTNILTSLLIPYIFFSLPSFVFAVFRGEIGKWIALVAVVLRLFIPKHFPDWL 419
Query: 120 ELPAALIILIVVAPGLIANTFRDNIVGVVVCLVIACYLLQEHIRASGGFRNSFTKANGVS 179
ELP ALI+LIVV+P L+A+TFR+++VGV+VCLVIACYLLQEHIRASGGFRNSFT+ANGVS
Sbjct: 420 ELPGALILLIVVSPDLVASTFRNDLVGVIVCLVIACYLLQEHIRASGGFRNSFTRANGVS 599
Query: 180 NSIGIIILLVYPIWAAVVIIF 200
NSIGII+LLVYPIWA + I+F
Sbjct: 600 NSIGIILLLVYPIWALLTILF 662
>TC76315 similar to GP|10121845|gb|AAG13395.1 cold acclimation protein
WCOR413-like protein {Oryza sativa} [Oryza sativa
(japonica cultivar-group), partial (69%)
Length = 908
Score = 312 bits (800), Expect = 5e-86
Identities = 150/200 (75%), Positives = 175/200 (87%)
Frame = +2
Query: 1 MWKGMNFREAEAADLINSDFRDLSLAATKLANHAVNLGVGFGFGASFFGLIAAIAAIYLL 60
MW MNF+E EA ++NSDF+DLS A++LANHA+ G G+G SFFG AA+AAIYLL
Sbjct: 83 MWNKMNFQE-EAVQVMNSDFKDLSEVASRLANHAIKFA-GIGWGGSFFGFFAAVAAIYLL 256
Query: 61 VLDRTNWKTNILTGLLIPYIFFSLPSIIFNVFRGEIGKWIALVAIVLRIFIPKHFPDWLE 120
VLDRTNWKTNILT LLIPYIFFSLPS +F V RGEIGKWIALVA+VLR+FIPKHFPDWLE
Sbjct: 257 VLDRTNWKTNILTSLLIPYIFFSLPSFVFYVLRGEIGKWIALVAVVLRLFIPKHFPDWLE 436
Query: 121 LPAALIILIVVAPGLIANTFRDNIVGVVVCLVIACYLLQEHIRASGGFRNSFTKANGVSN 180
LP ALI+LIVV+P L+A+TFR+++VG++VCLVIACYLLQEHIRASGGFRNSFTKANGVSN
Sbjct: 437 LPGALILLIVVSPDLVASTFRNDLVGIIVCLVIACYLLQEHIRASGGFRNSFTKANGVSN 616
Query: 181 SIGIIILLVYPIWAAVVIIF 200
S+GII+LLVYP+WA + F
Sbjct: 617 SVGIILLLVYPVWALLTYFF 676
>TC88203 similar to GP|10121845|gb|AAG13395.1 cold acclimation protein
WCOR413-like protein {Oryza sativa} [Oryza sativa
(japonica cultivar-group), partial (66%)
Length = 1018
Score = 266 bits (680), Expect = 4e-72
Identities = 137/196 (69%), Positives = 161/196 (81%), Gaps = 1/196 (0%)
Frame = +1
Query: 5 MNFREAEAADLINSDFRDLSLAATKLANHAVNLGVGFGFGASFFGLIAAIAAIYLLVLDR 64
++F + AA LI SD DL+LAA N+ + LGV G G S LIA+IAAIYLL+LDR
Sbjct: 127 IDFEDEAAAQLITSDLTDLALAA----NNFILLGVS-GSGISVLQLIASIAAIYLLILDR 291
Query: 65 TNWKTNILTGLLIPYIFFSLPSIIFNVFRGEIGKWIALVAIVLRIFIPKHFPDWLELPAA 124
TNWKTNI T LLIPYIF SLPS IF++FR EIG+WIAL+A+VLR+F P+HFPDWLELPAA
Sbjct: 292 TNWKTNIFTSLLIPYIFLSLPSWIFSIFRAEIGRWIALIAVVLRLFFPRHFPDWLELPAA 471
Query: 125 LIILIVVAPGLIANTFR-DNIVGVVVCLVIACYLLQEHIRASGGFRNSFTKANGVSNSIG 183
LI+LIVVAP L ANTFR D + GVVVCL+IACYLLQEHIRASGGFR+SFTKA G+SN+IG
Sbjct: 472 LILLIVVAPDLFANTFRSDAVGGVVVCLIIACYLLQEHIRASGGFRDSFTKAYGMSNTIG 651
Query: 184 IIILLVYPIWAAVVII 199
II+LL+YPIW V+ I
Sbjct: 652 IILLLIYPIWTLVLYI 699
>AL371007 weakly similar to GP|10121845|gb| cold acclimation protein
WCOR413-like protein {Oryza sativa} [Oryza sativa
(japonica cultivar-group), partial (43%)
Length = 438
Score = 155 bits (391), Expect = 1e-38
Identities = 82/131 (62%), Positives = 95/131 (71%)
Frame = +2
Query: 16 INSDFRDLSLAATKLANHAVNLGVGFGFGASFFGLIAAIAAIYLLVLDRTNWKTNILTGL 75
I S DL++AA LA+H G G S IA I AIYLL LDRTNW+TN T L
Sbjct: 62 ITSALTDLAVAANNLAHHVS------GSGFSVLQFIAYIVAIYLLSLDRTNWETNTFTSL 223
Query: 76 LIPYIFFSLPSIIFNVFRGEIGKWIALVAIVLRIFIPKHFPDWLELPAALIILIVVAPGL 135
L+PYIFFSLPS IF VFR EIG+WIAL+A+VLR+F+ + FPD LELPAALI+LIVVAP L
Sbjct: 224 LVPYIFFSLPSWIFGVFRAEIGRWIALIAVVLRLFVSRRFPDRLELPAALILLIVVAPDL 403
Query: 136 IANTFRDNIVG 146
ANTFR + VG
Sbjct: 404 FANTFRSDEVG 436
>TC76436 GP|13359451|dbj|BAB33421. putative senescence-associated protein
{Pisum sativum}, partial (39%)
Length = 774
Score = 79.0 bits (193), Expect = 1e-15
Identities = 36/41 (87%), Positives = 38/41 (91%)
Frame = +3
Query: 66 NWKTNILTGLLIPYIFFSLPSIIFNVFRGEIGKWIALVAIV 106
NWKTNILT LLIPYIFFSLPS +F VFRGEIGKWIALVA+V
Sbjct: 651 NWKTNILTSLLIPYIFFSLPSFVFAVFRGEIGKWIALVAVV 773
>AL371008 similar to GP|11127595|dbj cold acclimation protein homolog
{Arabidopsis thaliana}, partial (21%)
Length = 451
Score = 73.2 bits (178), Expect = 6e-14
Identities = 34/42 (80%), Positives = 40/42 (94%)
Frame = +1
Query: 146 GVVVCLVIACYLLQEHIRASGGFRNSFTKANGVSNSIGIIIL 187
G+VVCLVIACYLLQE IRASGGFR+S TKA+G+SN+IGII+L
Sbjct: 1 GLVVCLVIACYLLQEQIRASGGFRDSLTKAHGISNTIGIILL 126
Score = 43.5 bits (101), Expect = 5e-05
Identities = 17/28 (60%), Positives = 24/28 (85%)
Frame = +3
Query: 172 FTKANGVSNSIGIIILLVYPIWAAVVII 199
FTK +G+SN+IGII+L++YPIW V+ I
Sbjct: 129 FTKTHGISNTIGIILLVIYPIWTLVLYI 212
>TC78457 weakly similar to PIR|E86416|E86416 unknown protein 31966-27882
[imported] - Arabidopsis thaliana, partial (22%)
Length = 978
Score = 59.3 bits (142), Expect = 1e-09
Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Frame = +2
Query: 69 TNILTGLLIPYIFFSLPSIIFNVFRGEIGKWIALVAIVLRIFIPKHFPDWLELPAALIIL 128
T + ++P P+ +F+ +G G W A +A+++R+F H P LELP +L
Sbjct: 389 TAVPKSFIVPLFALQAPAPVFSWIQGRYGVWSAFLALLVRLFF--HIPGELELPFIAFLL 562
Query: 129 IVVAPGLIANTFRDNIVGVVVCLVIACYLLQEHIRASGGFRNSFTKANGVSN--SIGIII 186
++VAP A RD G V+ L+IA YL +H + SF + + VS IGI +
Sbjct: 563 VIVAPH-EAVRLRDTKEGAVISLLIAVYLAFQHFSRT-SLEKSFDQGSVVSTLAVIGITV 736
>TC89992 auxin influx carrier protein [Medicago truncatula]
Length = 1676
Score = 31.2 bits (69), Expect = 0.28
Identities = 33/107 (30%), Positives = 45/107 (41%), Gaps = 19/107 (17%)
Frame = +2
Query: 75 LLIPYIFFSL---PSIIFNVFRGEIGKWIALVAIVL-----------RIFIPKHFPDWLE 120
L +PY F L IIF VF G +G W A + +L + H W E
Sbjct: 212 LTLPYSFSQLGMISGIIFQVFYGLMGSWTAYLISILYVEYRSRKEKENVSFKNHVIQWFE 391
Query: 121 LPAALIILIVVAPGLIAN-TFRDNIVGVVVCLVIAC----YLLQEHI 162
+ L+ A GL N TF + G V+ L IAC Y + +H+
Sbjct: 392 VLEGLLGPYWKAIGLAFNCTFL--LFGSVIQL-IACASNIYYINDHL 523
>NP501869 NP501869|AY115844.1|AAM55305.1 auxin influx carrier protein
[Medicago truncatula]
Length = 1449
Score = 29.6 bits (65), Expect = 0.81
Identities = 31/96 (32%), Positives = 40/96 (41%), Gaps = 15/96 (15%)
Frame = +1
Query: 75 LLIPYIFFSL---PSIIFNVFRGEIGKWIALVAIVL-----------RIFIPKHFPDWLE 120
L +PY F L I+F +F G IG W A + VL + H W E
Sbjct: 193 LTLPYSFSQLGMVSGIVFQIFYGLIGSWTAYLISVLYVEYRARKEKENVNFKNHVIQWFE 372
Query: 121 LPAALIILIVVAPGLIAN-TFRDNIVGVVVCLVIAC 155
+ L+ A GL N TF + G V+ L IAC
Sbjct: 373 VLDGLLGRYWKALGLAFNCTFL--LFGSVIQL-IAC 471
>TC87762 similar to GP|21537142|gb|AAM61483.1 unknown {Arabidopsis
thaliana}, partial (65%)
Length = 1594
Score = 29.6 bits (65), Expect = 0.81
Identities = 16/45 (35%), Positives = 23/45 (50%)
Frame = +1
Query: 53 AIAAIYLLVLDRTNWKTNILTGLLIPYIFFSLPSIIFNVFRGEIG 97
A AI V+ + W +TGL IP + +L S+ + VFR G
Sbjct: 856 AFLAIAFEVVGKKKWMAITITGLGIPILVGTLASMCYFVFRQHFG 990
>TC92930 similar to GP|13430332|gb|AAK25798.1 rubisco activase {Zantedeschia
aethiopica}, partial (42%)
Length = 765
Score = 29.6 bits (65), Expect = 0.81
Identities = 19/56 (33%), Positives = 31/56 (54%)
Frame = +3
Query: 66 NWKTNILTGLLIPYIFFSLPSIIFNVFRGEIGKWIALVAIVLRIFIPKHFPDWLEL 121
NW+T+I GLL+ + L + ++ R ++ K I L V+RI +PK LE+
Sbjct: 369 NWQTSIWKGLLLVMLIKMLSRVDLSMVR-QLNK*IFLFLKVVRIQMPKTSTQLLEV 533
>TC90702 similar to GP|15028243|gb|AAK76710.1 unknown protein {Arabidopsis
thaliana}, partial (32%)
Length = 1039
Score = 27.7 bits (60), Expect = 3.1
Identities = 10/21 (47%), Positives = 16/21 (75%)
Frame = +3
Query: 4 GMNFREAEAADLINSDFRDLS 24
G NFR E DL+N++F++L+
Sbjct: 933 GSNFRHIELFDLVNNEFKELT 995
>BG586655 similar to GP|23495458|db dehydratiion responsive element binding
protein 1 like protein {Prunus avium}, partial (46%)
Length = 835
Score = 27.3 bits (59), Expect = 4.0
Identities = 30/88 (34%), Positives = 40/88 (45%), Gaps = 11/88 (12%)
Frame = -2
Query: 8 REAEAADLINSDFRDLSLAATKLANHAVNLGVGFGFGASFFGLIAAIAAI---------Y 58
R AE+A L +DF AAT A A++ GVG+ + L+ + I
Sbjct: 369 RHAESAKLRQADFPLRVSAATSCARAAIS-GVGY-VPSQILDLLFLLTLILGTLISQTHL 196
Query: 59 LLVLDRTNWKTNILTGL--LIPYIFFSL 84
LL L RT T L L L+P +FF L
Sbjct: 195 LLFLLRTPRYTGCLVSLNTLLPALFFGL 112
>TC91020 similar to GP|23495458|dbj|BAC20183. dehydratiion responsive
element binding protein 1 like protein {Prunus avium},
partial (46%)
Length = 435
Score = 27.3 bits (59), Expect = 4.0
Identities = 29/88 (32%), Positives = 40/88 (44%), Gaps = 11/88 (12%)
Frame = -3
Query: 8 REAEAADLINSDFRDLSLAATKLANHAVNLGVGFGFGASFFGLIAAIAAI---------Y 58
R AE+A L +DF AAT A A++ GVG+ + L+ +A +
Sbjct: 340 RHAESAKLRQADFPLRVSAATSCARAAIS-GVGY-VPSQILDLLFLLAILLGTLISQTHL 167
Query: 59 LLVLDRTNWKTNILTGL--LIPYIFFSL 84
L L RT T L L L+P +FF L
Sbjct: 166 LFFLRRTPRYTGCLVSLNTLLPALFFGL 83
>AW696172 weakly similar to PIR|H96620|H96 hypothetical protein F23H11.3
[imported] - Arabidopsis thaliana, partial (19%)
Length = 649
Score = 26.9 bits (58), Expect = 5.3
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 155 CYLLQEHIRASGGFRNSF 172
CY +Q IRA GGFR +F
Sbjct: 581 CYTMQSVIRACGGFRFAF 634
>TC78344 similar to GP|13540405|gb|AAK29456.1 histone H1 {Lens culinaris},
partial (86%)
Length = 1215
Score = 26.6 bits (57), Expect = 6.9
Identities = 14/26 (53%), Positives = 16/26 (60%)
Frame = -1
Query: 23 LSLAATKLANHAVNLGVGFGFGASFF 48
L LAA LA A LG+G GF A+ F
Sbjct: 567 LDLAAGALATGAFALGLGLGFAAAGF 490
>TC88837 similar to GP|23617012|dbj|BAC20708. putative translational
inhibitor protein {Oryza sativa (japonica
cultivar-group)}, partial (68%)
Length = 897
Score = 26.6 bits (57), Expect = 6.9
Identities = 9/20 (45%), Positives = 17/20 (85%)
Frame = -1
Query: 77 IPYIFFSLPSIIFNVFRGEI 96
+P++F +L S+IFN+FR ++
Sbjct: 432 LPHVFENLLSLIFNIFRDKL 373
>TC78451 similar to GP|9279625|dbj|BAB01083.1
gb|AAF23830.1~gene_id:MOJ10.9~strong similarity to
unknown protein {Arabidopsis thaliana}, partial (88%)
Length = 2452
Score = 26.6 bits (57), Expect = 6.9
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 9/83 (10%)
Frame = +1
Query: 4 GMNFREAEAADLINSDFRDLSLA--------ATKLANHAVNLGVGFGFGASFFGLIAAIA 55
G++F + L+ D R L A + N + +GF F SF GL + +
Sbjct: 523 GLSFSGGFGSSLLAMDQRTYELIGPDYPGNRAEDVKNPGLGWMIGFMFVVSFLGLFSLVP 702
Query: 56 AIYLLVLD-RTNWKTNILTGLLI 77
++VLD + + + T +LI
Sbjct: 703 LRKVMVLDYKLTYPSGTATAMLI 771
>TC77936 weakly similar to PIR|T52319|T52319 P-glycoprotein-like protein
pgp3 [imported] - Arabidopsis thaliana, partial (32%)
Length = 1219
Score = 26.2 bits (56), Expect = 9.0
Identities = 11/19 (57%), Positives = 13/19 (67%)
Frame = +1
Query: 40 GFGFGASFFGLIAAIAAIY 58
GFGFG SFF L A A ++
Sbjct: 625 GFGFGLSFFMLYAVDACVF 681
>TC76410 similar to GP|4689382|gb|AAD27878.1| chlorophyll a/b binding
protein CP29 {Vigna radiata}, complete
Length = 1138
Score = 26.2 bits (56), Expect = 9.0
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3
Query: 68 KTNILTGLLIPYIFFSLPSII 88
K ++ TGLLI I F+LPS+I
Sbjct: 834 KDHLTTGLLI*VILFTLPSLI 896
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.331 0.147 0.455
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,553,731
Number of Sequences: 36976
Number of extensions: 92169
Number of successful extensions: 642
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of query: 200
length of database: 9,014,727
effective HSP length: 91
effective length of query: 109
effective length of database: 5,649,911
effective search space: 615840299
effective search space used: 615840299
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 56 (26.2 bits)
Lotus: description of TM0091b.8