TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0089b.6
         (647 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC79804 weakly similar to GP|6175165|gb|AAF04891.1| Mutator-like...    84  1e-18
BF646328 similar to PIR|F84533|F845 Mutator-like transposase [im...    55  7e-18
AL375902 similar to GP|9759134|dbj mutator-like transposase-like...    47  3e-05
TC82556 similar to GP|21536965|gb|AAM61306.1 putative zinc finge...    29  6.4

>TC79804 weakly similar to GP|6175165|gb|AAF04891.1| Mutator-like transposase
            {Arabidopsis thaliana}, partial (57%)
          Length = 2129

 Score = 83.6 bits (205), Expect(2) = 1e-18
 Identities = 66/231 (28%), Positives = 107/231 (45%), Gaps = 1/231 (0%)
 Frame = +1

Query: 357  HMFYLRHLYANF-KNFFGGRVVIRNLMMDAAKATYHQLWTKKMMELQALHPEAYTWLMQI 415
            H F +RHL  N  K F   R++  +L+  AA AT    + +KM E++ + P A  WL   
Sbjct: 1021 HAFCMRHLSENIGKEFKNSRLI--HLLWSAAYATTINAFREKMAEIEEVSPNASMWLQHF 1194

Query: 416  PTSAWCKQAFTFYTKCDVLMNKLYESFNATILLARDKPVLTMVD*IRSYIMGRFATMNEK 475
              S W    F   T+   L + + E FN  IL A++ P++ +++ I+S +   F     K
Sbjct: 1195 HPSQWALVYFEG-TRYGHLSSNI-EEFNKWILEAQELPIIQVIERIQSKLKTEFDDRRLK 1368

Query: 476  MDKY*RGVMPKPLERLKWEIQMTSHLIPQCCG*DMFEVKHIVSHDQFIVDLKKHTCMCNF 535
               +   + P    R+   I   S    Q    D  E + I +    IV++  H+C C  
Sbjct: 1369 SSSWCSVLTPSSERRMVEAINRASTY--QVLKSDEVEFEVISADRSDIVNIGSHSCSCRD 1542

Query: 536  WELVGIPFRHEIAAISHNGQKPEDFVHAYYRRAAYRATYEHLVSPISGQKL 586
            W+L GIP  H +AA+  + +    +    +  A+YR T    V+P+S + L
Sbjct: 1543 WQLYGIPCSHAVAALISSRKDVYAYTAKCFTVASYRDTVCRGVTPLSLENL 1695



 Score = 28.1 bits (61), Expect(2) = 1e-18
 Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
 Frame = +3

Query: 579  SPISGQKLWPTT-----NDEYILSP-LYRRALGRPKKLR--MRDPHEDTTNNHTRLHIGV 630
            +P+ G+  W T      ND  ++ P  +RR  GRP+K R  + D + D    H       
Sbjct: 1674 TPVPGKLEWRTDESALDNDIAVVRPPKFRRPPGRPEKKRICVEDHNRDKHTVHC------ 1835

Query: 631  SRNKFSRCGQFGH 643
                 SRC Q GH
Sbjct: 1836 -----SRCNQTGH 1859


>BF646328 similar to PIR|F84533|F845 Mutator-like transposase [imported] -
           Arabidopsis thaliana, partial (3%)
          Length = 636

 Score = 55.5 bits (132), Expect(2) = 7e-18
 Identities = 30/62 (48%), Positives = 36/62 (57%), Gaps = 5/62 (8%)
 Frame = -3

Query: 566 RRAAYRATYEHLVSPISGQKLWPTTNDEYILSPLYRRALGRPKKLRMRDPHE-----DTT 620
           R++   ATY H+V P SG KLWP TN E+I     RR+ GRPKKLR +   E     D T
Sbjct: 193 RKSQCLATYSHIVLPSSGPKLWPVTNTEHINPLAKRRSAGRPKKLRKKANDETVRSGDAT 14

Query: 621 NN 622
            N
Sbjct: 13  GN 8



 Score = 53.5 bits (127), Expect(2) = 7e-18
 Identities = 23/47 (48%), Positives = 30/47 (62%)
 Frame = -1

Query: 520 DQFIVDLKKHTCMCNFWELVGIPFRHEIAAISHNGQKPEDFVHAYYR 566
           +++IV+L + TC C  W L GIP  H I  I HNG   E+FV +YYR
Sbjct: 417 NKYIVNLAQRTCACRKWNLTGIPCAHVIPCIWHNGLADENFVSSYYR 277


>AL375902 similar to GP|9759134|dbj mutator-like transposase-like protein
           {Arabidopsis thaliana}, partial (20%)
          Length = 542

 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 28/98 (28%), Positives = 37/98 (37%), Gaps = 11/98 (11%)
 Frame = +2

Query: 527 KKHTCMCNFWELVGIPFRHEIAAISHNGQKPEDFVHAYYRRAAYRATYEHLVSPISGQKL 586
           +   C C  W+L G P  H  AA+   G     F    +   +YR  Y  ++ PI  +  
Sbjct: 2   RSRECSCRRWQLYGYPCAHAAAALISCGHNAHMFAEPCFTVQSYRMAYSQMIYPIPDKSQ 181

Query: 587 WPTTN-----------DEYILSPLYRRALGRPKKLRMR 613
           W               D  I  P  RR  GRPKK  +R
Sbjct: 182 WREHGEGAEGGGGARVDIVIHPPKIRRPPGRPKKKVLR 295


>TC82556 similar to GP|21536965|gb|AAM61306.1 putative zinc finger and C2
           domain protein {Arabidopsis thaliana}, partial (40%)
          Length = 756

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 12/74 (16%)
 Frame = -1

Query: 567 RAAYRATYEHLVSPISGQKLWPTTNDEYILSPLYRR------------ALGRPKKLRMRD 614
           ++AYR T++HL  P     +   T D+ +L PLY +            A+   ++     
Sbjct: 300 QSAYRQTFQHLQMP---WLMLSVTEDQCLLLPLYHQQKKCHDQILSISAVHNAREQTAYV 130

Query: 615 PHEDTTNNHTRLHI 628
           PH    +N++ LH+
Sbjct: 129 PHSILGSNYSSLHL 88


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.341    0.148    0.503 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,357,746
Number of Sequences: 36976
Number of extensions: 337538
Number of successful extensions: 2214
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1621
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 573
Number of HSP's gapped (non-prelim): 1711
length of query: 647
length of database: 9,014,727
effective HSP length: 102
effective length of query: 545
effective length of database: 5,243,175
effective search space: 2857530375
effective search space used: 2857530375
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 61 (28.1 bits)