TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0087.11
         (146 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC84128 homologue to GP|9279721|dbj|BAB01311.1 contains similari...   125  5e-30
TC90398                                                                29  0.77
TC84865 weakly similar to GP|1684845|gb|AAB48303.1| pinin {Canis...    28  1.7
BQ135564 similar to PIR|S35942|S35 probable ATP synthase chain -...    27  3.8
TC88813 similar to GP|9828634|gb|AAG00257.1| F1N21.5 {Arabidopsi...    26  6.5
TC86270 similar to GP|15293161|gb|AAK93691.1 unknown protein {Ar...    25  8.5

>TC84128 homologue to GP|9279721|dbj|BAB01311.1 contains similarity to
           unknown protein~gb|AAF15970.1~gene_id:MTE24.1
           {Arabidopsis thaliana}, partial (56%)
          Length = 542

 Score =  125 bits (315), Expect = 5e-30
 Identities = 61/92 (66%), Positives = 75/92 (81%)
 Frame = +3

Query: 38  SPRNLLLALVGEVGELSEIFQWKGEVARGLPNWSCDDKEHLEEELSDVLLYLVRLADVCG 97
           SPRNLLLA++GEVGELSEIFQWKGEV RGLP++  ++K HL EELSDVLLYLVRL+D+CG
Sbjct: 30  SPRNLLLAMIGEVGELSEIFQWKGEVQRGLPDFKEEEKVHLGEELSDVLLYLVRLSDICG 209

Query: 98  LDLGQAALAKIVKNAQKYPVTSAINNGNSKTG 129
           +DLG+AAL K+  NA KYP  ++    N + G
Sbjct: 210 VDLGKAALRKVELNAIKYPAKASKEVANKEDG 305


>TC90398 
          Length = 1434

 Score = 28.9 bits (63), Expect = 0.77
 Identities = 16/80 (20%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
 Frame = +3

Query: 69  NWSCDDKEHLEEELSDVLLYLVRLADVCG-----LDLGQAALAKIVKNAQKYPVTSAINN 123
           N  C+D + ++ ELS++   L ++ D+ G     +D       +++   +K+ +     +
Sbjct: 327 NSHCEDSKMIKNELSELTSVLEKILDILGANNWVVDRQSKGFRELLPPLEKHIIAILSES 506

Query: 124 GNSKTGEKTTAVVKIDNQRI 143
            NSK+      +  I +Q++
Sbjct: 507 ENSKSKAHELGIKLIGSQKV 566


>TC84865 weakly similar to GP|1684845|gb|AAB48303.1| pinin {Canis
           familiaris}, partial (4%)
          Length = 559

 Score = 27.7 bits (60), Expect = 1.7
 Identities = 18/60 (30%), Positives = 31/60 (51%)
 Frame = -2

Query: 42  LLLALVGEVGELSEIFQWKGEVARGLPNWSCDDKEHLEEELSDVLLYLVRLADVCGLDLG 101
           L+++ +  V E+  I  W  E+  G+ NW+CD        LSD+ ++ +  A +C   LG
Sbjct: 240 LIISRLPRVFEVCSIL-WLREILIGVLNWNCD------FGLSDI*IFNLMAALLCDFMLG 82


>BQ135564 similar to PIR|S35942|S35 probable ATP synthase chain - soybean,
           partial (69%)
          Length = 712

 Score = 26.6 bits (57), Expect = 3.8
 Identities = 10/19 (52%), Positives = 12/19 (62%)
 Frame = -3

Query: 54  SEIFQWKGEVARGLPNWSC 72
           S IF+WK  +   LPN SC
Sbjct: 302 SLIFRWKSPICSSLPNQSC 246


>TC88813 similar to GP|9828634|gb|AAG00257.1| F1N21.5 {Arabidopsis
           thaliana}, partial (2%)
          Length = 1511

 Score = 25.8 bits (55), Expect = 6.5
 Identities = 22/83 (26%), Positives = 36/83 (42%), Gaps = 1/83 (1%)
 Frame = +2

Query: 56  IFQWKGEVARGLPNWSCDDKEHLEEELSDVLLYLVRLADVCGLDLGQAALAKIVKNAQKY 115
           IFQ   E+ R LP W+   + HL++E             +CG + G   L  ++   +  
Sbjct: 485 IFQM--ELLRILPTWTLKVRNHLKKE-----------RRICGSETGFNHLKLLLVGMKMI 625

Query: 116 PVTS-AINNGNSKTGEKTTAVVK 137
           PV    I  G+ K G K   +++
Sbjct: 626 PVKDILIYQGDPKGGVKRLLLLR 694


>TC86270 similar to GP|15293161|gb|AAK93691.1 unknown protein {Arabidopsis
            thaliana}, partial (89%)
          Length = 2204

 Score = 25.4 bits (54), Expect = 8.5
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 33   WDQYHSPRNLLLALV 47
            W + HSP N+LLAL+
Sbjct: 1955 WKEIHSPENVLLALL 1999


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.314    0.132    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,740,526
Number of Sequences: 36976
Number of extensions: 43819
Number of successful extensions: 153
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of query: 146
length of database: 9,014,727
effective HSP length: 87
effective length of query: 59
effective length of database: 5,797,815
effective search space: 342071085
effective search space used: 342071085
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)