BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0086.17
(1019 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG644690 weakly similar to GP|18542179|gb putative pol protein {... 190 5e-66
BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2... 205 6e-53
CB893805 similar to GP|10177935|d copia-type polyprotein {Arabid... 169 4e-42
AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsi... 167 2e-41
BG587156 similar to PIR|G85055|G8 probable polyprotein [imported... 160 2e-39
BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F2... 156 3e-38
AJ502495 weakly similar to GP|18071369|g putative gag-pol polypr... 132 5e-31
TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative ret... 132 5e-31
TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-relate... 74 1e-28
TC89912 weakly similar to PIR|B84512|B84512 probable retroelemen... 114 2e-25
BI262917 weakly similar to GP|19920130|g Putative retroelement {... 110 2e-24
BG587170 similar to PIR|F86470|F8 probable retroelement polyprot... 105 1e-22
BG586293 weakly similar to PIR|E84473|E84 probable retroelement ... 96 7e-20
BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vu... 94 3e-19
BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sati... 68 6e-16
BG586273 weakly similar to PIR|F86470|F8 probable retroelement p... 75 1e-13
BG644677 weakly similar to GP|7682800|gb| Hypothetical protein T... 73 6e-13
CB893680 weakly similar to GP|1167523|db ORF(AA 1-1338) {Nicotia... 70 5e-12
AJ499215 weakly similar to GP|6642775|gb| gag-pol polyprotein {V... 65 1e-10
BE941052 weakly similar to PIR|B85188|B85 retrotransposon like p... 62 1e-09
>BG644690 weakly similar to GP|18542179|gb putative pol protein {Zea mays},
partial (22%)
Length = 629
Score = 190 bits (482), Expect(2) = 5e-66
Identities = 88/141 (62%), Positives = 116/141 (81%)
Frame = -2
Query: 572 VVRNKARLVAQGYSQQEGIDYTETFAPVARLEAVKLLISFSVNHNIILHQMDVKSAFLNG 631
+ RNK++LV QGY+Q+EGIDY E F+PVAR+EA+++LI+F+ L+QMDVKSAF+NG
Sbjct: 424 ITRNKSKLVVQGYNQKEGIDYDEAFSPVARMEAIRILIAFAAFMGFKLYQMDVKSAFING 245
Query: 632 YISEEVYVHQPPGFKDEKNPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDT 691
+ EEV+V QPPGF+D + P+HVF+L K+LYGLKQAPRAWYERLS FLL+N F RGK+D
Sbjct: 244 DLKEEVFVKQPPGFEDAEVPNHVFRLNKTLYGLKQAPRAWYERLSKFLLKNGFKRGKIDN 65
Query: 692 TLFCKTYKDDILIVQIYVDDI 712
TLF + ++LI+Q+YVDDI
Sbjct: 64 TLFLLKRE*ELLIIQVYVDDI 2
Score = 80.9 bits (198), Expect(2) = 5e-66
Identities = 36/64 (56%), Positives = 49/64 (76%)
Frame = -3
Query: 503 LLSLKGLMSLIEPKSIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPQSVHVIGTKWVF 562
L+S +S IEPK++ EAL+D DWI +M+EEL+QF ++ VW LV +P+ VIGT+WVF
Sbjct: 621 LVSFSAFISSIEPKNVKEALRDADWINSMQEELHQFERSKVWYLVPRPEGKTVIGTRWVF 442
Query: 563 RNKL 566
RNKL
Sbjct: 441 RNKL 430
>BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2O9.150 -
Arabidopsis thaliana, partial (11%)
Length = 732
Score = 205 bits (522), Expect = 6e-53
Identities = 100/217 (46%), Positives = 143/217 (65%), Gaps = 1/217 (0%)
Frame = +1
Query: 747 IQVDQTPEGTYIHQSKYTKELLKKFNMTELVIAKTPMHPTCILEKEDASGKVCQKLYRGM 806
++V Q EG YI Q KY +LL++F M + +++ P+ P C L K++ KV Y+ +
Sbjct: 1 VEVIQNEEGIYICQRKYVTDLLERFGMEKSNLSRNPIAPRCKLIKDENGVKVDATKYKQI 180
Query: 807 IGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGSTNLGLMYKKTSEYK 866
+G L+YL A+RPD+++ + L +RF + P E H+ AVKR+LRYL G+ NLG+MYK+ K
Sbjct: 181 VGCLMYLAATRPDLMYVLSLISRFMNCPTELHMHAVKRVLRYLNGTINLGIMYKRNGSEK 360
Query: 867 LSGYCDADYVGDRTERKSTSGNC*FLGSNLVSWASKRQSTIALSTAEAEYIPAAICSTQM 926
L Y D+DY GD +RKSTSG L S VSW+SK+Q + LST +AE+I AA C+ Q
Sbjct: 361 LEAYTDSDYAGDLDDRKSTSGYVFMLSSGAVSWSSKKQPVVTLSTTKAEFIAAAFCACQS 540
Query: 927 LWMKHQLEDYQILES-NIPIYCDNTAAISLSKNPILH 962
+WM+ LE +S +I +YCDN + I LSKNP+LH
Sbjct: 541 VWMRRVLEKLGYTQSGSITMYCDNNSTIKLSKNPVLH 651
>CB893805 similar to GP|10177935|d copia-type polyprotein {Arabidopsis
thaliana}, partial (14%)
Length = 778
Score = 169 bits (429), Expect = 4e-42
Identities = 87/249 (34%), Positives = 149/249 (58%), Gaps = 4/249 (1%)
Frame = +3
Query: 514 EPKSIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPQSVHVIGTKWVFRNKLNEKGDVV 573
+P + +EA++ + W +M E+ +N+ W L IG KW+F+ KLNE G++
Sbjct: 39 DPTTFEEAVKSEKWRASMNNEMEATERNNTWELTDLRSGAKTIGLKWIFKTKLNENGEIE 218
Query: 574 RNKARLVAQGYSQQEGIDYTETFAPVARLEAVKLLISFSV---NHNIILHQMDVKSAFLN 630
+ KARLVA+GYSQQ G+DYTE FAPVAR + ++++I+ + + + M + +
Sbjct: 219 KYKARLVAKGYSQQYGVDYTEVFAPVARWDTIRMVIALAAQIKRDGVCIS*M*KAHSCME 398
Query: 631 GYISEEVYVHQPPGFKDEKNPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVD 690
+ + + ++ + + ++K++LYGLKQAPRAWY R+ ++ + F + +
Sbjct: 399 N*MRKFLLINHRVM*RRVIS----*RVKRALYGLKQAPRAWYSRIEAYFTKEGFEKCPYE 566
Query: 691 TTLFCKTYK-DDILIVQIYVDDIIFGSANQFLCKEFSEMMQAEFEMSMMGELKYFMGIQV 749
TLF K + ILI+ +YVDD+IF ++ + +EF + M+ EF MS +G++ YF+G++V
Sbjct: 567 HTLFVKLSEGGKILIISLYVDDLIFIGNDENMFEEFKKSMKKEFNMSDLGKMHYFLGVEV 746
Query: 750 DQTPEGTYI 758
Q +G YI
Sbjct: 747 TQNEKGIYI 773
>AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsis thaliana},
partial (9%)
Length = 675
Score = 167 bits (423), Expect = 2e-41
Identities = 85/192 (44%), Positives = 118/192 (61%)
Frame = +1
Query: 522 LQDKDWILAMEEELNQFSKNDVWSLVKKPQSVHVIGTKWVFRNKLNEKGDVVRNKARLVA 581
L D W+ AM+ E N W LV P IG KWV+R K N G V + KARLVA
Sbjct: 82 LSDPRWLQAMKTEYKALIDNKTWDLVPLPPHKKAIGCKWVYRVKENPDGSVNKFKARLVA 261
Query: 582 QGYSQQEGIDYTETFAPVARLEAVKLLISFSVNHNIILHQMDVKSAFLNGYISEEVYVHQ 641
+G+SQ G DYTETF+PV + ++L+++ ++ + + Q+D+ +AFLNG++ EEVY+ Q
Sbjct: 262 KGFSQTLGCDYTETFSPVIKPVTIRLILTIAITYKWEIQQIDINNAFLNGFLQEEVYMSQ 441
Query: 642 PPGFKDEKNPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDD 701
P GF + N V KL KSLYGLKQAPRAWYE L+S ++ F + + D +L
Sbjct: 442 PQGF-EAANKSLVCKLNKSLYGLKQAPRAWYEXLTSAQIQFGFTKSRCDPSLLIYNQNGA 618
Query: 702 ILIVQIYVDDII 713
+ + IYVDDI+
Sbjct: 619 CIYLXIYVDDIL 654
>BG587156 similar to PIR|G85055|G8 probable polyprotein [imported] -
Arabidopsis thaliana, partial (17%)
Length = 618
Score = 160 bits (405), Expect = 2e-39
Identities = 77/183 (42%), Positives = 117/183 (63%)
Frame = -1
Query: 515 PKSIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPQSVHVIGTKWVFRNKLNEKGDVVR 574
P+S +EA++DK+W ++ E KND W + P+ + ++W+F K G + R
Sbjct: 558 PRSYEEAMEDKEWKESVGAEAGAMIKNDTWYESELPKGKKAVSSRWIFTIKYKADGSIER 379
Query: 575 NKARLVAQGYSQQEGIDYTETFAPVARLEAVKLLISFSVNHNIILHQMDVKSAFLNGYIS 634
K RLVA+G++ G DY ETFAPVA+L +++++S +VN L QMDVK+AFL G +
Sbjct: 378 KKTRLVARGFTLTYGEDYIETFAPVAKLHTIRIVLSLAVNLGWGLWQMDVKNAFLQGELE 199
Query: 635 EEVYVHQPPGFKDEKNPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLF 694
+EVY++ PPG + +V +LKK++YGLKQ+PRAWY +LS+ L F + ++D TLF
Sbjct: 198 DEVYMYPPPGLEHLVKRGNVLRLKKAIYGLKQSPRAWYNKLSTTLNGRGFRKSELDHTLF 19
Query: 695 CKT 697
T
Sbjct: 18 TLT 10
>BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F20P5.25
[imported] - Arabidopsis thaliana, partial (10%)
Length = 744
Score = 156 bits (395), Expect = 3e-38
Identities = 87/241 (36%), Positives = 134/241 (55%)
Frame = +2
Query: 654 VFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVQIYVDDII 713
V +L+KS+YGLKQA R WY +LS L+ +++ D +LF K + +YVDDI+
Sbjct: 20 VCELQKSIYGLKQASRQWYSKLSESLISFGYLQSSSDFSLFTKFKDSSFTTLLVYVDDIV 199
Query: 714 FGSANQFLCKEFSEMMQAEFEMSMMGELKYFMGIQVDQTPEGTYIHQSKYTKELLKKFNM 773
+ + + F++ +G L+YF+G++V ++ +G ++Q KYT ELL+
Sbjct: 200 LAGNDISEIQHVKCFLIDRFKIKDLGSLRYFLGLEVARSKQGILLNQRKYTLELLEDSGN 379
Query: 774 TELVIAKTPMHPTCILEKEDASGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSD 833
+ TP + L D+ + YR +IG L+YLT +RPDI F+V ++F S
Sbjct: 380 LAVKSTLTPYDISLKLHNSDSPLYNDETQYRRLIGKLIYLTTTRPDISFAVQQLSQFVSK 559
Query: 834 PRETHLTAVKRILRYLKGSTNLGLMYKKTSEYKLSGYCDADYVGDRTERKSTSGNC*FLG 893
P++ H A R+L+YLK + GL Y TS KLS + D+D+ T RKS +G FLG
Sbjct: 560 PQQVHYQAAIRVLQYLKTAPAKGLFYSATSNLKLSSFADSDWATCPTTRKSVTGYWVFLG 739
Query: 894 S 894
S
Sbjct: 740 S 742
>AJ502495 weakly similar to GP|18071369|g putative gag-pol polyprotein {Oryza
sativa}, partial (9%)
Length = 542
Score = 132 bits (333), Expect = 5e-31
Identities = 66/147 (44%), Positives = 98/147 (65%), Gaps = 2/147 (1%)
Frame = +2
Query: 873 ADYVGDRTERKSTSGNC*FLGSNLVSWASKRQSTIALSTAEAEYIPAAICSTQMLWMKHQ 932
+D+ GD RKSTSG LG+ +SW+SK+Q +A STAEAEYI + C+TQ +W++
Sbjct: 2 SDWAGDTETRKSTSGYAFHLGTGAISWSSKKQPVVAFSTAEAEYIASTSCATQTVWLRRI 181
Query: 933 LEDYQILESNIP--IYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLLLKFVD 990
LE E N P IYCDN +AI+LSKNP+ H R+KHI++++H IR+ + + +++++
Sbjct: 182 LEVMHH-EQNTPTKIYCDNKSAIALSKNPVFHGRSKHIDIQFHKIRELIAEKEVVIEYCP 358
Query: 991 IDHQWADIFTKPLAEDRFNFILKNLNM 1017
+ + ADIFTKPL + F + K L M
Sbjct: 359 TEEKIADIFTKPLKIESFYKLKKMLGM 439
>TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative retroelement
{Oryza sativa} [Oryza sativa (japonica cultivar-group)],
partial (10%)
Length = 823
Score = 132 bits (333), Expect = 5e-31
Identities = 75/217 (34%), Positives = 114/217 (51%), Gaps = 2/217 (0%)
Frame = +1
Query: 194 LELLHIDLFGPVKTESIGGKRYGMVIVDDYSRWTWVKFLSRKDESHAVFSTFIAQVQNEK 253
L+ +H DL+GP K S GG+RY M I+DD+ R WV FL K+E+ F + V+ +
Sbjct: 97 LDYIHSDLWGPSKVTSYGGRRYMMTIIDDFPRKVWVYFLRYKNETFPTFKKWRILVETQT 276
Query: 254 ACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSSPRTPQ*NGVVERKNRTLQEMARTML 313
+ ++ +D+ EF + F ++GIA + PR PQ NGV ER RTL E AR ML
Sbjct: 277 GKNVKKLITDN*LEFCSSDFNEFCTNHGIARHKTIPRNPQQNGVAERMIRTLLERARCML 456
Query: 314 QETGM--AKYFWAEAVNTVCYIQNRISVRPILNKTRYELWKNIKPNISYFHPFGCVCYVL 371
G+ + W EA +T C++ NR + K ++W + S FGC Y L
Sbjct: 457 SNAGL*N*RDLWVEAASTACHLVNRSPHSALDFKVPEDIWSGNLVDYSNLRIFGCPAYAL 636
Query: 372 NTKDRLHKFDAKSSKCLLLGYSDRSKGFRFYNTDAKT 408
+L ++ +C+ L Y+ SKG+R + +D K+
Sbjct: 637 VNDGKL---APRAGECIFLSYASESKGYRLWCSDPKS 738
>TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
(EC 3.4.23.-);, partial (7%)
Length = 705
Score = 73.6 bits (179), Expect(2) = 1e-28
Identities = 38/87 (43%), Positives = 56/87 (63%)
Frame = +1
Query: 842 VKRILRYLKGSTNLGLMYKKTSEYKLSGYCDADYVGDRTERKSTSGNC*FLGSNLVSWAS 901
VKRI+RY+KG++ + + + SE + GY D+D+ GD +RKST+G L VSW S
Sbjct: 1 VKRIMRYIKGTSGVAVCFGG-SELTVRGYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLS 177
Query: 902 KRQSTIALSTAEAEYIPAAICSTQMLW 928
K Q+ +ALST EAEY+ A + + L+
Sbjct: 178 KLQTVVALSTTEAEYMAAYLKHARKLF 258
Score = 72.4 bits (176), Expect(2) = 1e-28
Identities = 28/84 (33%), Positives = 54/84 (63%)
Frame = +3
Query: 925 QMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVL 984
+ +WM+ +E+ + I +YCD+ +A+ +++NP HSR KHI ++YHF+R+ V++G +
Sbjct: 249 EAIWMQRLMEELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGIQYHFVREVVEEGSV 428
Query: 985 LLKFVDIDHQWADIFTKPLAEDRF 1008
++ + + AD TK + D+F
Sbjct: 429 DMQKIHTNDNLADAMTKSINTDKF 500
>TC89912 weakly similar to PIR|B84512|B84512 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(10%)
Length = 814
Score = 114 bits (285), Expect = 2e-25
Identities = 58/163 (35%), Positives = 94/163 (57%), Gaps = 2/163 (1%)
Frame = +1
Query: 841 AVKRILRYLKGSTNLGLMYKKTSEYK--LSGYCDADYVGDRTERKSTSGNC*FLGSNLVS 898
A+K +L+YL S L Y K ++ + L GY DADY G+ RKS SG L +S
Sbjct: 4 ALKWVLKYLNESLKSSLKYTKAAQEEDALEGYVDADYAGNVDTRKSLSGFVFTLYGTTIS 183
Query: 899 WASKRQSTIALSTAEAEYIPAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKN 958
W + +QS + LST +AEYI +W+K + + I + + I+CD+ +AI L+ +
Sbjct: 184 WKANQQSVVTLSTTQAEYIAFVEGVKDAIWLKGMIGELGITQEYVKIHCDSQSAIHLANH 363
Query: 959 PILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDIDHQWADIFTK 1001
+ H R KHI+++ HFIRD ++ ++++ + + AD+FTK
Sbjct: 364 QVYHERTKHIDIRLHFIRDMIESKEIVVEKMASEENPADVFTK 492
>BI262917 weakly similar to GP|19920130|g Putative retroelement {Oryza
sativa} [Oryza sativa (japonica cultivar-group)],
partial (8%)
Length = 426
Score = 110 bits (276), Expect = 2e-24
Identities = 56/113 (49%), Positives = 66/113 (57%)
Frame = +1
Query: 291 TPQ*NGVVERKNRTLQEMARTMLQETGMAKYFWAEAVNTVCYIQNRISVRPILNKTRYEL 350
TPQ NGV ER NRTL E R ML+ GMAK FWAEAV T CY+ NR I KT E+
Sbjct: 85 TPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTVIDLKTPMEM 264
Query: 351 WKNIKPNISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSDRSKGFRFYN 403
WK + S H FGC YV+ K D KS KC+ LGY+D KG+ ++
Sbjct: 265 WKGKPVDYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYXLWD 423
>BG587170 similar to PIR|F86470|F8 probable retroelement polyprotein
[imported] - Arabidopsis thaliana, partial (13%)
Length = 718
Score = 105 bits (261), Expect = 1e-22
Identities = 78/240 (32%), Positives = 121/240 (49%), Gaps = 4/240 (1%)
Frame = -3
Query: 105 KNNIYKIRLSELEAQNVKCLL----SVNEEQ*VWHRRLGHVSMRKISQLSKLNLVRGLPT 160
K ++Y + + N KC S+N++ +WH RLGH R LNL+ LP
Sbjct: 674 KGDLYMLEKLD-PVSNYKCSFTSSSSLNKDA-LWHARLGHPHGRA------LNLM--LPG 525
Query: 161 LKFSSDALCEACQKDKFTKVHFKAKNVVSTSRPLELLHIDLFGPVKTESIGGKRYGMVIV 220
+ F + CEAC K K F + V + +L++ DL+ + S +Y + +
Sbjct: 524 VVFENKN-CEACILGKHCKNVFPRTSTVYENC-FDLIYTDLW-TAPSLSRDNHKYFVTFI 354
Query: 221 DDYSRWTWVKFLSRKDESHAVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSY 280
D+ S++TW+ + KD F F A V N +I +RSD+GGE+ + F+S D +
Sbjct: 353 DEKSKYTWLTLIPSKDRVIDAFKNFQAYVTNHYHAKIKILRSDNGGEYTSYAFKSHLDHH 174
Query: 281 GIAHDFSSPRTPQ*NGVVERKNRTLQEMARTMLQETGMAKYFWAEAVNTVCYIQNRISVR 340
GI H S P TPQ NGV +RKN+ L E+AR+++ + V+T CY+ N I +
Sbjct: 173 GILHQTSCPYTPQQNGVAKRKNKHLMEVARSLMFQAN---------VSTACYLINWIPTK 21
>BG586293 weakly similar to PIR|E84473|E84 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(7%)
Length = 763
Score = 95.9 bits (237), Expect = 7e-20
Identities = 48/116 (41%), Positives = 73/116 (62%)
Frame = +2
Query: 517 SIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPQSVHVIGTKWVFRNKLNEKGDVVRNK 576
S+D + +D I ++ L LVKKP V IG +W+++ K NE G +++ K
Sbjct: 5 SLDRCNEGRDRIYYQKQTLK---------LVKKPTGVKPIGLRWIYKIKRNEDGTLIKYK 157
Query: 577 ARLVAQGYSQQEGIDYTETFAPVARLEAVKLLISFSVNHNIILHQMDVKSAFLNGY 632
ARLVA+GY +Q+GID+ E FAPV R+E + LL++ + + +H +DVK AFLNG+
Sbjct: 158 ARLVAKGYVKQQGIDFDEVFAPVVRIETI*LLLALAATNGC*IHHIDVKIAFLNGH 325
>BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vulgaris},
partial (13%)
Length = 494
Score = 93.6 bits (231), Expect = 3e-19
Identities = 49/122 (40%), Positives = 73/122 (59%), Gaps = 3/122 (2%)
Frame = +1
Query: 817 RPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGSTNLGLMY---KKTSEYKLSGYCDA 873
RPDI +SV + ++F DPR+ HL A RILRY++G+ GL++ K+ Y+L Y D+
Sbjct: 121 RPDICYSVSVISKFMHDPRKPHLIAANRILRYVRGTMEYGLLFPYGAKSEVYELICYSDS 300
Query: 874 DYVGDRTERKSTSGNC*FLGSNLVSWASKRQSTIALSTAEAEYIPAAICSTQMLWMKHQL 933
D+ GD R+STSG +SW +K+Q ALS+ EAEYI + Q LW+ +
Sbjct: 301 DWCGD---RRSTSGYVFKFNDAAISWCTKKQPITALSSYEAEYIAGTFATFQALWLDSVI 471
Query: 934 ED 935
++
Sbjct: 472 KE 477
>BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sativa (japonica
cultivar-group)}, partial (8%)
Length = 503
Score = 68.2 bits (165), Expect(2) = 6e-16
Identities = 41/125 (32%), Positives = 66/125 (52%), Gaps = 3/125 (2%)
Frame = +1
Query: 666 QAPRAWYERLSSFLLENEFVRGKVDTTLFCK---TYKDDILIVQIYVDDIIFGSANQFLC 722
Q+PR W++R + + + +++ + D +F K T K ILIV YVDDI +
Sbjct: 1 QSPRDWFDRFT*VVKKFGYIQCQTDHAMFIKHSSTVKKAILIV--YVDDIFLTGDHGK*I 174
Query: 723 KEFSEMMQAEFEMSMMGELKYFMGIQVDQTPEGTYIHQSKYTKELLKKFNMTELVIAKTP 782
K ++ EFE+ +G LKYF+G++V + +G+ I Q KY +LLK+ M + P
Sbjct: 175 KRLKNLLAEEFEIKDLGNLKYFLGMEVARWKKGSSISQRKYVLDLLKETRMIGCKTIRDP 354
Query: 783 MHPTC 787
C
Sbjct: 355 YGCNC 369
Score = 35.0 bits (79), Expect(2) = 6e-16
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = +2
Query: 779 AKTPMHPTCILEKEDASGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARF 830
++TPM T L D V + Y+ ++G L+YL+ +RPDI F V ++F
Sbjct: 344 SETPMDATVKLGTLDNGTLVDKGRYQRLVGKLIYLSHTRPDISFVVCTMSQF 499
>BG586273 weakly similar to PIR|F86470|F8 probable retroelement polyprotein
[imported] - Arabidopsis thaliana, partial (7%)
Length = 705
Score = 75.5 bits (184), Expect = 1e-13
Identities = 42/142 (29%), Positives = 73/142 (50%), Gaps = 12/142 (8%)
Frame = -2
Query: 331 CYIQNRISVRPILNKTRYELWKNIKPNISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLL 390
CY+ NRI R + ++ +E+ KP+++Y FGC+CYVL + +K +A+S K + +
Sbjct: 701 CYLINRIPTRVLKDQAPFEVLNQRKPSLTYMRVFGCLCYVLVPGELRNKLEARSRKAMFI 522
Query: 391 GYSDRSKGFRFYNTDAKTIEESIHVRFDDKLDSDQSKLVEKFADLSINVSDKG------- 443
GYS KG++ Y+ +A+ + S V+F ++ + K E DL+ SDK
Sbjct: 521 GYSTTQKGYKCYDPEARRVLVSRDVKFIEERGYYEEKNQEDLRDLT---SDKAGVLRVIL 351
Query: 444 -----KAPEEAEPEEEEPEEEA 460
K ++ +PEE +
Sbjct: 350 EGLGIKMNQDQSTRSRQPEESS 285
>BG644677 weakly similar to GP|7682800|gb| Hypothetical protein T15F17.l
{Arabidopsis thaliana}, partial (3%)
Length = 539
Score = 72.8 bits (177), Expect = 6e-13
Identities = 39/104 (37%), Positives = 59/104 (56%)
Frame = -3
Query: 811 LYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGSTNLGLMYKKTSEYKLSGY 870
+ LT P+I FS++L +R+ S P H +K I +YLKG ++GL Y K L GY
Sbjct: 531 ILLTLQGPNITFSINLLSRYSSAPTMRH*NGIKHICKYLKGIIDMGLFYSKDCSPDLIGY 352
Query: 871 CDADYVGDRTERKSTSGNC*FLGSNLVSWASKRQSTIALSTAEA 914
+A Y+ D + +S +G G+ ++SW S + STIA S+ A
Sbjct: 351 VNA*YLSDPHKARS*TGYIFTCGNTVISWRSTK*STIATSSNHA 220
>CB893680 weakly similar to GP|1167523|db ORF(AA 1-1338) {Nicotiana tabacum},
partial (7%)
Length = 780
Score = 69.7 bits (169), Expect = 5e-12
Identities = 35/74 (47%), Positives = 47/74 (63%)
Frame = -2
Query: 596 FAPVARLEAVKLLISFSVNHNIILHQMDVKSAFLNGYISEEVYVHQPPGFKDEKNPDHVF 655
F P+ +L + L+S N+ L +DVK+AFL G + E++Y+HQP GF E V
Sbjct: 554 FVPIVKLNTIMFLLSIVAIENLYLE*LDVKTAFLRGDLVEDIYMHQPEGFS*EVG-KMVG 378
Query: 656 KLKKSLYGLKQAPR 669
KLKKS+YGLKQ PR
Sbjct: 377 KLKKSMYGLKQGPR 336
>AJ499215 weakly similar to GP|6642775|gb| gag-pol polyprotein {Vitis
vinifera}, partial (18%)
Length = 567
Score = 65.5 bits (158), Expect = 1e-10
Identities = 38/100 (38%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Frame = +3
Query: 3 WYLDSGCSRHMTGERRMFQELKLKPEGKVGFGGNEKGKIVGTGTICVDSS---PCIDNVL 59
W +DSGC+ HMT +R +F+EL KV ++ G GT+ V S I NVL
Sbjct: 108 WLIDSGCTHHMTHDRDLFKELNKSTISKVRMLNGAHIEVEGIGTVLVKSHSGYKQISNVL 287
Query: 60 LVDGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVL 99
L +LLS+ QL KGY V+F + C Q + VL
Sbjct: 288 YAPKLNQSLLSVPQLLTKGYKVLFEHEKCVIKDQNNKEVL 407
>BE941052 weakly similar to PIR|B85188|B85 retrotransposon like protein
[imported] - Arabidopsis thaliana, partial (4%)
Length = 480
Score = 62.0 bits (149), Expect = 1e-09
Identities = 29/71 (40%), Positives = 42/71 (58%)
Frame = +2
Query: 947 CDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDIDHQWADIFTKPLAED 1006
CD +A L+ NP+ HSR KHI + HF+RD VQ+G L ++ V Q AD TKPL++
Sbjct: 29 CDYLSATYLTHNPVYHSRMKHISIDIHFVRDLVQQGKLKVQHVCTVDQLADCLTKPLSKS 208
Query: 1007 RFNFILKNLNM 1017
R + + +
Sbjct: 209 RHQLLRNKIGV 241
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.321 0.136 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,816,207
Number of Sequences: 36976
Number of extensions: 431880
Number of successful extensions: 2388
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 2212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2295
length of query: 1019
length of database: 9,014,727
effective HSP length: 106
effective length of query: 913
effective length of database: 5,095,271
effective search space: 4651982423
effective search space used: 4651982423
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Lotus: description of TM0086.17