BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0083.16
(294 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC77443 similar to GP|9758634|dbj|BAB09296.1 RNA-binding protein... 505 e-144
TC87322 similar to GP|12322716|gb|AAG51340.1 unknown protein; 28... 255 1e-68
TC85827 similar to GP|16930473|gb|AAL31922.1 At1g09660/F21M12_5 ... 255 1e-68
BE999437 weakly similar to GP|19424087|gb putative RNA-binding p... 129 1e-56
TC89321 similar to PIR|B84807|B84807 probable RNA-binding protei... 163 6e-41
BE239611 similar to PIR|B84807|B84 probable RNA-binding protein ... 160 5e-40
TC80253 homologue to PIR|B84807|B84807 probable RNA-binding prot... 127 5e-36
TC80254 similar to PIR|B84807|B84807 probable RNA-binding protei... 111 3e-25
AJ501946 similar to PIR|B84807|B848 probable RNA-binding protein... 49 2e-06
BE203456 similar to GP|12322716|gb| unknown protein; 28504-31237... 39 0.002
AW694747 similar to PIR|B84807|B848 probable RNA-binding protein... 32 0.38
BI309256 similar to GP|9294366|dbj| transcription or splicing fa... 30 1.4
TC85904 similar to PIR|F84674|F84674 probable AAA-type ATPase [i... 30 1.4
TC93723 weakly similar to GP|7804960|gb|AAF70196.1| putative his... 28 4.2
TC85663 weakly similar to GP|4335755|gb|AAD17432.1| unknown prot... 28 5.5
BG587776 weakly similar to PIR|F86242|F86 unknown protein 98896... 28 5.5
BG585312 similar to GP|1429223|emb peroxidase {Arabidopsis thali... 27 7.2
AJ388859 similar to GP|4966349|gb|A Contains a PF|01464 Transgly... 27 7.2
TC88119 similar to GP|10178284|emb|CAC08342. rev interacting pro... 27 7.2
TC86392 weakly similar to GP|8778551|gb|AAF79559.1| F22G5.35 {Ar... 27 7.2
>TC77443 similar to GP|9758634|dbj|BAB09296.1 RNA-binding protein-like
{Arabidopsis thaliana}, partial (80%)
Length = 1332
Score = 505 bits (1301), Expect = e-144
Identities = 250/294 (85%), Positives = 272/294 (92%)
Frame = +3
Query: 1 MMSSSGAGRYMAFPPSPSAPPSPHLSGLRSAASSALAEQDKYLTELLGERHILGPFMAVL 60
MMSSSGAGRYMAFPPSPS PHLSGLRS ASS ++E D+YL+ELLGER + PFMAVL
Sbjct: 72 MMSSSGAGRYMAFPPSPSQS-LPHLSGLRSPASSVISEHDQYLSELLGERQKISPFMAVL 248
Query: 61 PHCYRLINQEILRVTTLLGNASVLGQSRLEHASPLATGGIFSNGGADVNGWASRFQSEMP 120
PHCYRL+NQEILRVTT+LGNASVLGQS LEH SPLA GG+FS GG D NGW SRFQSEMP
Sbjct: 249 PHCYRLLNQEILRVTTILGNASVLGQSGLEHGSPLAAGGMFSKGGLDPNGWVSRFQSEMP 428
Query: 121 SLLQSSATPSWLSPQGSSSGLVVKKTMRVDIPVEVYPNFNFVGRLLGPRGNSLKRVEAST 180
SL+QSS TPSWLSPQGSSSGL+VKKT+RVDIPV+ +PNFNFVGRLLGPRGNSLKRVEA+T
Sbjct: 429 SLIQSSPTPSWLSPQGSSSGLLVKKTIRVDIPVDSFPNFNFVGRLLGPRGNSLKRVEANT 608
Query: 181 DCRVLIRGRGSIKDPAKEEMMRGKPGYEHLNEPLHVLVEAEFPAEIIDARLMQAREILED 240
+CRVLIRGRGSIKD A+EEMMRGKPGYEHLNEPLH+LVEAE PAEIIDARLMQAREILED
Sbjct: 609 ECRVLIRGRGSIKDTAREEMMRGKPGYEHLNEPLHILVEAELPAEIIDARLMQAREILED 788
Query: 241 LLKPVDESQDYYKKQQLRELALLNGTLREEGSPMSGSVSPFHNSLGMKRAKTRG 294
LL+PV+ES D+YKKQQLRELA++NGTLREEGSPMSGSVSPFHNSLGMKRAKTRG
Sbjct: 789 LLRPVEESHDFYKKQQLRELAMINGTLREEGSPMSGSVSPFHNSLGMKRAKTRG 950
>TC87322 similar to GP|12322716|gb|AAG51340.1 unknown protein; 28504-31237
{Arabidopsis thaliana}, partial (62%)
Length = 1356
Score = 255 bits (652), Expect = 1e-68
Identities = 136/255 (53%), Positives = 173/255 (67%), Gaps = 3/255 (1%)
Frame = +3
Query: 41 KYLTELLGERHILGPFMAVLPHCYRLINQEILRVTT---LLGNASVLGQSRLEHASPLAT 97
+YLTEL+ E LGPFM VLP C RL+NQEILR + L+ N R++ S +
Sbjct: 276 QYLTELVAEYQKLGPFMQVLPLCTRLLNQEILRASGKSGLMQNQGFSDYDRVQFGSTKPS 455
Query: 98 GGIFSNGGADVNGWASRFQSEMPSLLQSSATPSWLSPQGSSSGLVVKKTMRVDIPVEVYP 157
+ + GW S L W S+ +VKK +R+DIP + +P
Sbjct: 456 LMPSLDTTSSFTGWNS--------LSHEGLNVDWQRAPAISNSHIVKKMLRLDIPHDNHP 611
Query: 158 NFNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPAKEEMMRGKPGYEHLNEPLHVL 217
FNFVGRLLGPRGNSLKRVEA+T CRV IRG+GSIKD KEE++RG+PG+EHLNEPLH+L
Sbjct: 612 TFNFVGRLLGPRGNSLKRVEATTGCRVFIRGKGSIKDFDKEELLRGRPGFEHLNEPLHIL 791
Query: 218 VEAEFPAEIIDARLMQAREILEDLLKPVDESQDYYKKQQLRELALLNGTLREEGSPMSGS 277
+EAE P ++D RL QA+EI+E+LLKPVDESQD YK+QQLRELA+LN + REE +SGS
Sbjct: 792 IEAELPVNVVDLRLRQAQEIIEELLKPVDESQDIYKRQQLRELAMLNSSFREESPQLSGS 971
Query: 278 VSPFHNSLGMKRAKT 292
+SPF ++ +KRAKT
Sbjct: 972 LSPFTSNEMIKRAKT 1016
>TC85827 similar to GP|16930473|gb|AAL31922.1 At1g09660/F21M12_5
{Arabidopsis thaliana}, partial (65%)
Length = 1499
Score = 255 bits (652), Expect = 1e-68
Identities = 152/311 (48%), Positives = 196/311 (62%), Gaps = 21/311 (6%)
Frame = +1
Query: 3 SSSGAGRYMAFPPSP--SAPPSPHLS-----GLRSAASSALAEQDKYLTELLGERHILGP 55
S + G Y FPP SAPP PH GL + +++++YL ELL ER LGP
Sbjct: 139 SGNNNGSYFQFPPHAPASAPPPPHPPHGHGHGL-PPSPIRFSDRERYLAELLAERQKLGP 315
Query: 56 FMAVLPHCYRLINQEILRVTTLLGNASVLGQSRLEHAS----------PLATGGIFSNGG 105
F+ VLP RL+ QEI R+++ G+ ++ + ++ P+ F
Sbjct: 316 FLQVLPQSTRLLTQEIRRISSA-GSGFIMEHDHPDSSTTPFRPPLPQHPITRPMDFDWPH 492
Query: 106 ADVNGWASRFQSEMPSLLQSSATPSWLSPQGSSSGLVVKKTMRVDIPVEVYPN-FNFVGR 164
+ NG R S S + W PQG + +VK+ +R+D+PV+ YPN +NFVGR
Sbjct: 493 REDNGNIQRMGSFQASPV------GWHGPQGIPTTPIVKRVIRLDVPVDKYPNQYNFVGR 654
Query: 165 LLGPRGNSLKRVEASTDCRVLIRGRGSIKDPAKEEMMRGKPGYEHLNEPLHVLVEAEFPA 224
+LGPRGNSLKRVEA T+CRV IRG GS+KD KEE ++ KPGYEHL EPLH+LVEAEFP
Sbjct: 655 ILGPRGNSLKRVEAMTECRVYIRGCGSVKDSIKEEKLKDKPGYEHLKEPLHLLVEAEFPE 834
Query: 225 EIIDARLMQAREILEDLLKPVDESQDYYKKQQLRELALLNGTLREEGSPMSGSVSPF--- 281
+II++RL A +LE+LLKPVDES D+YKKQQLRELA++NGTLREE MS S+SP
Sbjct: 835 DIINSRLDHAVAVLENLLKPVDESLDHYKKQQLRELAMINGTLREESPSMSPSMSPSMSP 1014
Query: 282 HNSLGMKRAKT 292
NS GMKRAKT
Sbjct: 1015FNSNGMKRAKT 1047
>BE999437 weakly similar to GP|19424087|gb putative RNA-binding protein
{Arabidopsis thaliana}, partial (39%)
Length = 480
Score = 129 bits (325), Expect(2) = 1e-56
Identities = 63/79 (79%), Positives = 68/79 (85%)
Frame = +3
Query: 66 LINQEILRVTTLLGNASVLGQSRLEHASPLATGGIFSNGGADVNGWASRFQSEMPSLLQS 125
+ EILRVTT+LGNASVLGQS LEH SPLA GG+FS GG D NGW SRFQSEMPSL+QS
Sbjct: 243 IFGAEILRVTTILGNASVLGQSGLEHGSPLAAGGMFSKGGLDPNGWVSRFQSEMPSLIQS 422
Query: 126 SATPSWLSPQGSSSGLVVK 144
S TPSWLSPQGSSSGL+VK
Sbjct: 423 SPTPSWLSPQGSSSGLLVK 479
Score = 108 bits (269), Expect(2) = 1e-56
Identities = 53/69 (76%), Positives = 59/69 (84%)
Frame = +2
Query: 1 MMSSSGAGRYMAFPPSPSAPPSPHLSGLRSAASSALAEQDKYLTELLGERHILGPFMAVL 60
MMSSSGAGRYMAFPPSPS PHLSGLRS ASS ++E D+YL+ELLGER + PFMAVL
Sbjct: 8 MMSSSGAGRYMAFPPSPSQS-LPHLSGLRSPASSVISEHDQYLSELLGERQKISPFMAVL 184
Query: 61 PHCYRLINQ 69
PHCYRL+NQ
Sbjct: 185PHCYRLLNQ 211
>TC89321 similar to PIR|B84807|B84807 probable RNA-binding protein
[imported] - Arabidopsis thaliana, partial (62%)
Length = 907
Score = 163 bits (413), Expect = 6e-41
Identities = 93/203 (45%), Positives = 116/203 (56%)
Frame = +3
Query: 5 SGAGRYMAFPPSPSAPPSPHLSGLRSAASSALAEQDKYLTELLGERHILGPFMAVLPHCY 64
SG G Y SP SP + S +YL+ELL E LGPF+ +LP+
Sbjct: 339 SGGGLYNPNFSSPVRAASPQIRPNSDIIDS------QYLSELLAEYQKLGPFIKILPNSS 500
Query: 65 RLINQEILRVTTLLGNASVLGQSRLEHASPLATGGIFSNGGADVNGWASRFQSEMPSLLQ 124
RL+NQEILRV+ +L N RL H SP +++ GW + +
Sbjct: 501 RLLNQEILRVSGMLSNQGFADFDRLRHRSPSPLSS------SNLTGWNNLQHERLCGT-- 656
Query: 125 SSATPSWLSPQGSSSGLVVKKTMRVDIPVEVYPNFNFVGRLLGPRGNSLKRVEASTDCRV 184
T W S S VK+ +R++IPV+ YPNFNFVGRLLGPRGNSLKRVEA+T CRV
Sbjct: 657 PGMTMDWQGAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRV 836
Query: 185 LIRGRGSIKDPAKEEMMRGKPGY 207
IRG+GSIKDP KEE +RG+PGY
Sbjct: 837 FIRGKGSIKDPDKEEKLRGRPGY 905
>BE239611 similar to PIR|B84807|B84 probable RNA-binding protein [imported] -
Arabidopsis thaliana, partial (40%)
Length = 656
Score = 160 bits (405), Expect = 5e-40
Identities = 74/104 (71%), Positives = 91/104 (87%)
Frame = +1
Query: 142 VVKKTMRVDIPVEVYPNFNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPAKEEMM 201
+VKK +R+DIP + YPNFNFVGRLLGPRGNSLKRVEA+T CRV IRG+GSIKD KEE++
Sbjct: 106 IVKKILRLDIPKDGYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDLDKEELL 285
Query: 202 RGKPGYEHLNEPLHVLVEAEFPAEIIDARLMQAREILEDLLKPV 245
RG+PGYEHL++ LH+L+EAE PA I+D RL A+EI+E+LLKPV
Sbjct: 286 RGRPGYEHLSDELHILIEAELPANIVDVRLRHAQEIIEELLKPV 417
>TC80253 homologue to PIR|B84807|B84807 probable RNA-binding protein
[imported] - Arabidopsis thaliana, partial (39%)
Length = 1063
Score = 127 bits (318), Expect(2) = 5e-36
Identities = 57/81 (70%), Positives = 72/81 (88%)
Frame = +3
Query: 171 NSLKRVEASTDCRVLIRGRGSIKDPAKEEMMRGKPGYEHLNEPLHVLVEAEFPAEIIDAR 230
+SLKRVEA+T CRV IRG+GSIKDP KE+ +RG+PGYEHLNE LH+L+EA+ PA ++D R
Sbjct: 12 HSLKRVEATTGCRVYIRGKGSIKDPEKEDKLRGRPGYEHLNENLHILIEADLPANVVDIR 191
Query: 231 LMQAREILEDLLKPVDESQDY 251
L QA+EI+E+LLKPVDESQD+
Sbjct: 192 LRQAQEIIEELLKPVDESQDF 254
Score = 41.6 bits (96), Expect(2) = 5e-36
Identities = 20/32 (62%), Positives = 24/32 (74%)
Frame = +1
Query: 252 YKKQQLRELALLNGTLREEGSPMSGSVSPFHN 283
++ QQLRELALLN REE SGSVSPF++
Sbjct: 256 FRGQQLRELALLNSNFREESPGPSGSVSPFNS 351
>TC80254 similar to PIR|B84807|B84807 probable RNA-binding protein
[imported] - Arabidopsis thaliana, partial (60%)
Length = 637
Score = 111 bits (278), Expect = 3e-25
Identities = 64/151 (42%), Positives = 85/151 (55%), Gaps = 3/151 (1%)
Frame = +3
Query: 41 KYLTELLGERHILGPFMAVLPHCYRLINQEILRVTTLLGNASVLGQSRLEH--ASPLATG 98
+YL+ELL E LGPF+ VLP C RL+NQEILRV+ +L N RL+H SP+A+
Sbjct: 189 QYLSELLAEHQKLGPFLQVLPICSRLLNQEILRVSGMLSNQGFGDFDRLQHRSPSPMASS 368
Query: 99 GIFSN-GGADVNGWASRFQSEMPSLLQSSATPSWLSPQGSSSGLVVKKTMRVDIPVEVYP 157
+ SN G + W S Q + W S S S VK+ +R++IPV+ +P
Sbjct: 369 NLMSNVSGTGMGAWNSLQQERLCG--PPGMNMDWQSAPASPSSFTVKRILRLEIPVDTFP 542
Query: 158 NFNFVGRLLGPRGNSLKRVEASTDCRVLIRG 188
NFNF + G +RVEA+T CRV IRG
Sbjct: 543 NFNFCWKTSGT*RQFFERVEATTGCRVFIRG 635
>AJ501946 similar to PIR|B84807|B848 probable RNA-binding protein [imported]
- Arabidopsis thaliana, partial (12%)
Length = 421
Score = 49.3 bits (116), Expect = 2e-06
Identities = 27/58 (46%), Positives = 33/58 (56%)
Frame = +3
Query: 18 SAPPSPHLSGLRSAASSALAEQDKYLTELLGERHILGPFMAVLPHCYRLINQEILRVT 75
S+P S + S + +YL ELL E GPFM VLP C RL+NQEILRV+
Sbjct: 168 SSPSSQRTNSPNINMRSNFDAESQYLMELLSEHQKPGPFMQVLPLCSRLLNQEILRVS 341
>BE203456 similar to GP|12322716|gb| unknown protein; 28504-31237
{Arabidopsis thaliana}, partial (10%)
Length = 539
Score = 38.9 bits (89), Expect = 0.002
Identities = 19/30 (63%), Positives = 22/30 (73%)
Frame = +2
Query: 46 LLGERHILGPFMAVLPHCYRLINQEILRVT 75
+L E LGPFM VLP C RL+NQEILR +
Sbjct: 296 MLIEYQKLGPFMQVLPLCTRLLNQEILRAS 385
>AW694747 similar to PIR|B84807|B848 probable RNA-binding protein [imported]
- Arabidopsis thaliana, partial (13%)
Length = 353
Score = 31.6 bits (70), Expect = 0.38
Identities = 14/26 (53%), Positives = 19/26 (72%)
Frame = +2
Query: 41 KYLTELLGERHILGPFMAVLPHCYRL 66
+YL+ELL E LGPF+ +LP+ RL
Sbjct: 275 QYLSELLAEYQKLGPFIKILPNSSRL 352
>BI309256 similar to GP|9294366|dbj| transcription or splicing factor-like
protein {Arabidopsis thaliana}, partial (7%)
Length = 566
Score = 29.6 bits (65), Expect = 1.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 151 IPVEVYPNFNFVGRLLGPRGNSLKRVEAST 180
+ V+ YP + FVG + G G+ KR+E T
Sbjct: 466 LQVQEYPGYKFVGLIYGTEGDYQKRLEKET 555
>TC85904 similar to PIR|F84674|F84674 probable AAA-type ATPase [imported] -
Arabidopsis thaliana, complete
Length = 1793
Score = 29.6 bits (65), Expect = 1.4
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -2
Query: 14 PPSPSAPPSPHLSGLRSAASSAL 36
PPSPS PP P + GL + A+S L
Sbjct: 502 PPSPSPPPFPFVFGLVATAASPL 434
>TC93723 weakly similar to GP|7804960|gb|AAF70196.1| putative histone
deacetylase HD2 {Oryza sativa}, partial (18%)
Length = 566
Score = 28.1 bits (61), Expect = 4.2
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = -3
Query: 14 PPSPSAPPSPHLSGLRSAASSALAEQDKYLTELLGERHILGPFMAVLPH 62
PP+ P S LSG+ S + S +E L G IL P LP+
Sbjct: 435 PPNTGFPLSA-LSGISSXSESVSSESSSSLESCSGSHSILNPEKKTLPY 292
>TC85663 weakly similar to GP|4335755|gb|AAD17432.1| unknown protein
{Arabidopsis thaliana}, partial (31%)
Length = 937
Score = 27.7 bits (60), Expect = 5.5
Identities = 15/23 (65%), Positives = 15/23 (65%)
Frame = -2
Query: 14 PPSPSAPPSPHLSGLRSAASSAL 36
PPSP PP P SGL AASS L
Sbjct: 366 PPSPPIPPDPSPSGL--AASSLL 304
>BG587776 weakly similar to PIR|F86242|F86 unknown protein 98896-95855
[imported] - Arabidopsis thaliana, partial (23%)
Length = 608
Score = 27.7 bits (60), Expect = 5.5
Identities = 19/64 (29%), Positives = 36/64 (55%), Gaps = 2/64 (3%)
Frame = +2
Query: 198 EEMMRGKPGYEHLNEPLHVLVEAEFPAEIIDARLM--QAREILEDLLKPVDESQDYYKKQ 255
E R + G + LN+ + ++ E A +I+A+ QAR+ EDL + ++E++ ++
Sbjct: 383 EIQRRLEEGRKKLNDEVAAQLQKEKEAALIEAKQKEEQARKEKEDLERMLEENRRKIEES 562
Query: 256 QLRE 259
Q RE
Sbjct: 563 QRRE 574
>BG585312 similar to GP|1429223|emb peroxidase {Arabidopsis thaliana},
partial (62%)
Length = 809
Score = 27.3 bits (59), Expect = 7.2
Identities = 15/53 (28%), Positives = 26/53 (48%)
Frame = +3
Query: 126 SATPSWLSPQGSSSGLVVKKTMRVDIPVEVYPNFNFVGRLLGPRGNSLKRVEA 178
S P+W P+G G++ K T +P + N + + + RG SL+ + A
Sbjct: 504 SGGPNWEVPKGRKDGIISKATETRQLPAPTF-NISQLQQSFSQRGLSLQDLVA 659
>AJ388859 similar to GP|4966349|gb|A Contains a PF|01464 Transglycosylase SLT
domain. {Arabidopsis thaliana}, partial (19%)
Length = 598
Score = 27.3 bits (59), Expect = 7.2
Identities = 20/72 (27%), Positives = 31/72 (42%)
Frame = -2
Query: 14 PPSPSAPPSPHLSGLRSAASSALAEQDKYLTELLGERHILGPFMAVLPHCYRLINQEILR 73
P + + SPH S + + +A + + T L LG +PHC ILR
Sbjct: 246 PANNNVSYSPHFSLCQIWLAIRIAREMNFSTSFLSNF*PLGTHFRYIPHCL-----*ILR 82
Query: 74 VTTLLGNASVLG 85
+ T++ A V G
Sbjct: 81 INTIIPVAEVGG 46
>TC88119 similar to GP|10178284|emb|CAC08342. rev interacting protein
mis3-like {Arabidopsis thaliana}, partial (79%)
Length = 1369
Score = 27.3 bits (59), Expect = 7.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 165 LLGPRGNSLKRVEASTDCRVLIRG 188
L+GP ++LK +E T C +L++G
Sbjct: 613 LVGPNSSTLKALEILTGCYILVQG 684
>TC86392 weakly similar to GP|8778551|gb|AAF79559.1| F22G5.35 {Arabidopsis
thaliana}, partial (29%)
Length = 1274
Score = 27.3 bits (59), Expect = 7.2
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 2 MSSSGAGRYMAFPPSPSAPPSPHLSGLRSAASSAL 36
MSSSG+ + PP+P+ P +P SG + S +L
Sbjct: 165 MSSSGSILTVVSPPNPTIPVTPPPSGTNVSPSLSL 269
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.315 0.133 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,292,095
Number of Sequences: 36976
Number of extensions: 111681
Number of successful extensions: 1124
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1115
length of query: 294
length of database: 9,014,727
effective HSP length: 95
effective length of query: 199
effective length of database: 5,502,007
effective search space: 1094899393
effective search space used: 1094899393
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0083.16