BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0079b.3
(382 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CB895143 64 1e-10
TC86542 weakly similar to GP|19698991|gb|AAL91231.1 EF-hand calc... 37 0.013
BG581317 homologue to OMNI|NTL01EC003 IS2 hypothetical protein {... 36 0.028
TC76418 similar to GP|16226228|gb|AAL16109.1 At1g20110/T20H2_10 ... 36 0.028
TC81266 weakly similar to GP|16415994|emb|CAB88653. hypothetical... 33 0.18
AL369112 weakly similar to GP|13540393|gb| histone H1 {Pisum sat... 33 0.24
BE324834 similar to GP|8132441|gb| extensin {Pisum sativum}, par... 32 0.53
BQ141029 similar to GP|8132441|gb| extensin {Pisum sativum}, par... 32 0.53
TC78057 weakly similar to PIR|T03962|T03962 r40g3 protein - rice... 32 0.53
TC76716 similar to PIR|T10863|T10863 extensin precursor - kidney... 32 0.53
TC82640 similar to GP|10177002|dbj|BAB10252. gene_id:K9E15.9~unk... 32 0.53
TC93197 similar to GP|8843761|dbj|BAA97309.1 mitochondrial carri... 31 0.70
TC76717 similar to PIR|T10863|T10863 extensin precursor - kidney... 31 0.70
TC88261 similar to PIR|S22697|S22697 extensin - Volvox carteri (... 31 0.91
BQ154238 similar to PIR|T10863|T10 extensin precursor - kidney b... 30 1.2
TC88259 similar to GP|6729037|gb|AAF27033.1| unknown protein {Ar... 30 1.2
TC79086 similar to GP|23499033|emb|CAD51113. ubiquitin-protein l... 30 1.2
AW559485 weakly similar to GP|23394429|gb| crinkling and necrosi... 30 1.6
AW584244 similar to GP|8886934|gb F2D10.25 {Arabidopsis thaliana... 30 1.6
TC78902 30 2.0
>CB895143
Length = 770
Score = 63.5 bits (153), Expect = 1e-10
Identities = 38/177 (21%), Positives = 85/177 (47%)
Frame = +2
Query: 102 TRWRVKDDLLLVQSWLNISKDPTVGTDQTAAKFWDRIRDQFDEYRDFDTPPRTGKMLKCR 161
+ W + +L+L+ W+ + VG +Q + +I D F+E+ F+ PP +
Sbjct: 203 SNWNIDQNLILISGWIKYGTNSVVGRNQKCDSY*GKIVDYFNEHCSFN-PPCDAAPCRNH 379
Query: 162 FGKLSKDIQFFTGCYNKVTTPWKSGHSEKDIMAEVHALFQVDHKKDFTHENVWRMVKDEP 221
+ ++K + + Y+ +SG S+ D++A+ H L+ + F + W +V+D+P
Sbjct: 380 YNYMNKILNKWIDAYDGAKRMQQSG*SKIDVLAKAHELYSSGKSEHFILISGWFVVRDQP 559
Query: 222 KWKGQSMKTNSRGQKKSGAGADGTSTDPSASIDCDEYEATPPTTRPKGKKAEKRKAK 278
++ +S+ +G+G+ G+ + D + + ++ P G+ A K++ K
Sbjct: 560 RY-------DSQVGGNTGSGSSGSKR--AHKSDASDSNSVGSSSCPMGRDAAKKR*K 703
>TC86542 weakly similar to GP|19698991|gb|AAL91231.1 EF-hand calcium binding
protein-like {Arabidopsis thaliana}, partial (23%)
Length = 1085
Score = 37.0 bits (84), Expect = 0.013
Identities = 27/98 (27%), Positives = 38/98 (38%), Gaps = 5/98 (5%)
Frame = +2
Query: 4 YPPQNQPHHPGGNF--QNSQYQMFP---YTSQNQPLHPDENFTNPQYPMYPPQYQFQSQA 58
Y P P N+ QN+ Y P Y + QP P N+ +P YPP S
Sbjct: 80 YAPSAPELPPPSNYTSQNTNYTQPPPPSYNNYTQPPPPSSNYNHPHN--YPPSQVSSSGY 253
Query: 59 PPTGSTGSKVSDTQCEATPDDTQHEGLDDIDLEDEDQS 96
PP+ S S + P T + + + D D+S
Sbjct: 254 PPSSSGYPPSSSSGYSNFPPGTNQDVIRSFQMVDRDRS 367
>BG581317 homologue to OMNI|NTL01EC003 IS2 hypothetical protein {Escherichia
coli K12-MG1655}, partial (55%)
Length = 808
Score = 35.8 bits (81), Expect = 0.028
Identities = 23/58 (39%), Positives = 26/58 (44%)
Frame = +2
Query: 2 SPYPPQNQPHHPGGNFQNSQYQMFPYTSQNQPLHPDENFTNPQYPMYPPQYQFQSQAP 59
SPYPP N H P N + P+ S N PL + P P YPP Y Q Q P
Sbjct: 236 SPYPPHNPDHVPS---SNPSFNPPPFESSN-PL-----YQQPSQPYYPP-YDQQHQTP 379
>TC76418 similar to GP|16226228|gb|AAL16109.1 At1g20110/T20H2_10
{Arabidopsis thaliana}, partial (54%)
Length = 2020
Score = 35.8 bits (81), Expect = 0.028
Identities = 23/58 (39%), Positives = 26/58 (44%)
Frame = +3
Query: 2 SPYPPQNQPHHPGGNFQNSQYQMFPYTSQNQPLHPDENFTNPQYPMYPPQYQFQSQAP 59
SPYPP N H P N + P+ S N PL + P P YPP Y Q Q P
Sbjct: 192 SPYPPHNPDHVPS---SNPSFNPPPFESSN-PL-----YQQPSQPYYPP-YDQQHQTP 335
>TC81266 weakly similar to GP|16415994|emb|CAB88653. hypothetical protein
{Neurospora crassa}, partial (2%)
Length = 644
Score = 33.1 bits (74), Expect = 0.18
Identities = 24/78 (30%), Positives = 32/78 (40%), Gaps = 17/78 (21%)
Frame = +3
Query: 3 PYPPQNQPHHPGG--------------NFQNSQYQM-FPYTSQNQPLHPDENF--TNPQY 45
P PPQ +P + GG NFQ+ Q+Q+ + P P N+ P
Sbjct: 339 PPPPQQRPSNWGGYGYSGVVEIPPQNSNFQHHQHQVQHHHVPHAPPPPPPSNYYPYQPPP 518
Query: 46 PMYPPQYQFQSQAPPTGS 63
P PP +Q PP GS
Sbjct: 519 PPPPPDNSYQPPPPPPGS 572
>AL369112 weakly similar to GP|13540393|gb| histone H1 {Pisum sativum},
partial (20%)
Length = 371
Score = 32.7 bits (73), Expect = 0.24
Identities = 23/77 (29%), Positives = 30/77 (38%)
Frame = +2
Query: 224 KGQSMKTNSRGQKKSGAGADGTSTDPSASIDCDEYEATPPTTRPKGKKAEKRKAKTTDTA 283
K + K + KK+ AGA D A+ E A P + K AEK AK D
Sbjct: 83 KAAAKKKAAAAAKKADAGAKDAKADTKAAEKPAEKAAEKPAEKAAEKPAEKAAAKKEDKK 262
Query: 284 SSTLSFAPHPDVLAMGK 300
+ + P D GK
Sbjct: 263 DAKPAAKPKADDKKKGK 313
>BE324834 similar to GP|8132441|gb| extensin {Pisum sativum}, partial (44%)
Length = 451
Score = 31.6 bits (70), Expect = 0.53
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 13/72 (18%)
Frame = +3
Query: 2 SPYPPQNQPHH------PGGNFQNSQYQMFPYTSQNQPLH----PDENFTNPQYPMY--- 48
SP PP +P+ P +++ ++ Y S P+H P +++P P+Y
Sbjct: 144 SPPPPPKKPYKYPSPPPPVYKYKSPPPPVYKYKSPPPPVHSPPPPHYVYSSPPPPVYSPP 323
Query: 49 PPQYQFQSQAPP 60
PP Y + S PP
Sbjct: 324 PPHYIYSSPPPP 359
>BQ141029 similar to GP|8132441|gb| extensin {Pisum sativum}, partial (54%)
Length = 613
Score = 31.6 bits (70), Expect = 0.53
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Frame = +2
Query: 2 SPYPPQNQPHHPGGNFQNSQYQMFPYTSQNQPLH---PDENFTNPQYPMY--PPQYQFQS 56
SP PP + P P ++ Y S P++ P + +P P+Y PP Y+++S
Sbjct: 149 SPPPPVHSPPPPYHYSSPPPPPVYKYKSPPPPVYSPPPVYKYKSPPPPVYSPPPPYKYKS 328
Query: 57 QAPP 60
PP
Sbjct: 329 PPPP 340
Score = 28.9 bits (63), Expect = 3.5
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +2
Query: 26 PYTSQNQPLHPDENFTNPQYPMY--PPQYQFQSQAPPTGS 63
PY + P P + +P P+Y PP Y+++S PP S
Sbjct: 182 PYHYSSPPPPPVYKYKSPPPPVYSPPPVYKYKSPPPPVYS 301
>TC78057 weakly similar to PIR|T03962|T03962 r40g3 protein - rice, partial
(50%)
Length = 878
Score = 31.6 bits (70), Expect = 0.53
Identities = 21/70 (30%), Positives = 25/70 (35%), Gaps = 4/70 (5%)
Frame = +2
Query: 4 YPPQNQPHHPGGNFQNSQYQMFPYTSQNQPLHPDENFTNPQ----YPMYPPQYQFQSQAP 59
YP Q QPH F + S QP P + P YP PP + AP
Sbjct: 257 YPQQPQPHQETQVFHTGHVSHENFNSYPQPPPPQSHHQQPSYGAAYPPAPPSVPDHTSAP 436
Query: 60 PTGSTGSKVS 69
+T VS
Sbjct: 437 FPNATVHHVS 466
Score = 30.8 bits (68), Expect = 0.91
Identities = 23/81 (28%), Positives = 36/81 (44%)
Frame = +2
Query: 3 PYPPQNQPHHPGGNFQNSQYQMFPYTSQNQPLHPDENFTNPQYPMYPPQYQFQSQAPPTG 62
P PPQ QPH P +Q + S+N +NF N YP P +Q ++Q TG
Sbjct: 170 PPPPQQQPHQP-----ETQVFHTGHVSRN------DNFNN--YPQQPQPHQ-ETQVFHTG 307
Query: 63 STGSKVSDTQCEATPDDTQHE 83
+ ++ + P + H+
Sbjct: 308 HVSHENFNSYPQPPPPQSHHQ 370
>TC76716 similar to PIR|T10863|T10863 extensin precursor - kidney bean,
partial (48%)
Length = 1275
Score = 31.6 bits (70), Expect = 0.53
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 13/72 (18%)
Frame = +3
Query: 2 SPYPPQNQPHH------PGGNFQNSQYQMFPYTSQNQPLH----PDENFTNPQYPMY--- 48
SP PP +P+ P +++ ++ Y S P+H P +++P P+Y
Sbjct: 651 SPPPPPKKPYKYPSPPPPVYKYKSPPPPVYKYKSPPPPVHSPPPPHYVYSSPPPPVYSPP 830
Query: 49 PPQYQFQSQAPP 60
PP Y + S PP
Sbjct: 831 PPHYIYSSPPPP 866
Score = 31.2 bits (69), Expect = 0.70
Identities = 18/64 (28%), Positives = 32/64 (49%), Gaps = 5/64 (7%)
Frame = +3
Query: 2 SPYPPQNQPHHPGGNFQNSQYQMFPYTSQNQPLH---PDENFTNPQYPMY--PPQYQFQS 56
SP PP +P+ + + ++ Y S P++ P + +P P+Y PP Y+++S
Sbjct: 138 SPPPPPKKPY----KYPSPPPPVYKYKSPPPPVYSPPPVYKYKSPPPPVYSPPPPYKYKS 305
Query: 57 QAPP 60
PP
Sbjct: 306 PPPP 317
>TC82640 similar to GP|10177002|dbj|BAB10252. gene_id:K9E15.9~unknown
protein {Arabidopsis thaliana}, partial (22%)
Length = 894
Score = 31.6 bits (70), Expect = 0.53
Identities = 22/76 (28%), Positives = 34/76 (43%)
Frame = +1
Query: 182 PWKSGHSEKDIMAEVHALFQVDHKKDFTHENVWRMVKDEPKWKGQSMKTNSRGQKKSGAG 241
PWKSG+SE +V K H+++W +DE K + + +K GQK + A
Sbjct: 244 PWKSGNSEN----------EVSLKDLLMHKDMW---EDEDKTRIELLKLLKTGQKSAPAN 384
Query: 242 ADGTSTDPSASIDCDE 257
+ S I+ E
Sbjct: 385 SAAKPEPISKDIEVSE 432
>TC93197 similar to GP|8843761|dbj|BAA97309.1 mitochondrial carrier
protein-like {Arabidopsis thaliana}, partial (19%)
Length = 712
Score = 31.2 bits (69), Expect = 0.70
Identities = 17/48 (35%), Positives = 28/48 (57%), Gaps = 4/48 (8%)
Frame = +2
Query: 17 FQNSQYQMFPYTSQNQP-LHPDENFTNPQYPM---YPPQYQFQSQAPP 60
F + + +FP++S P L+P E+F+NP +P+ +YQF PP
Sbjct: 143 FATTIHILFPFSSTPIPILYPVESFSNPHFPILFFVSFRYQFLQLLPP 286
>TC76717 similar to PIR|T10863|T10863 extensin precursor - kidney bean,
partial (56%)
Length = 928
Score = 31.2 bits (69), Expect = 0.70
Identities = 18/64 (28%), Positives = 32/64 (49%), Gaps = 5/64 (7%)
Frame = +2
Query: 2 SPYPPQNQPHHPGGNFQNSQYQMFPYTSQNQPLH---PDENFTNPQYPMY--PPQYQFQS 56
SP PP +P+ + + ++ Y S P++ P + +P P+Y PP Y+++S
Sbjct: 737 SPPPPPKKPY----KYPSPPPPVYKYKSPPPPVYSPPPVYKYKSPPPPVYSPPPPYKYKS 904
Query: 57 QAPP 60
PP
Sbjct: 905 PPPP 916
>TC88261 similar to PIR|S22697|S22697 extensin - Volvox carteri (fragment),
partial (7%)
Length = 1516
Score = 30.8 bits (68), Expect = 0.91
Identities = 28/76 (36%), Positives = 37/76 (47%), Gaps = 7/76 (9%)
Frame = +2
Query: 56 SQAPPTGSTGSKVSDTQCEATPDDTQHEGLDDID--LEDEDQSSGKKRTR-----WRVKD 108
S PT G +DT TP+D +H L+D+D LE ED S K + V+
Sbjct: 65 SPVDPTPKFGGSETDT---VTPNDKRHCILEDVDGELEMEDVSGHPKDEKPVXLDSSVET 235
Query: 109 DLLLVQSWLNISKDPT 124
D+LL S N + DPT
Sbjct: 236 DMLLQSS--NRNLDPT 277
>BQ154238 similar to PIR|T10863|T10 extensin precursor - kidney bean, partial
(22%)
Length = 574
Score = 30.4 bits (67), Expect = 1.2
Identities = 20/69 (28%), Positives = 31/69 (43%), Gaps = 10/69 (14%)
Frame = +2
Query: 2 SPYPP---QNQPHHPGGNFQNSQYQMFPYTSQNQPLH----PDENFTNPQYPMY---PPQ 51
SP PP P P +++ ++ Y S P+H P +++P P+Y PP
Sbjct: 107 SPPPPVYKYKSPPPPVYKYKSPPPPVYKYKSPPPPVHSPPPPHYVYSSPPPPVYSPPPPH 286
Query: 52 YQFQSQAPP 60
Y + S PP
Sbjct: 287 YIYSSPPPP 313
Score = 28.9 bits (63), Expect = 3.5
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Frame = +2
Query: 2 SPYPPQNQPHH------PGGNFQNSQYQMFPYTSQNQPLHPDENFTNPQYPMYPPQYQFQ 55
SP PP +P+ P +++ ++ Y S P++ ++ P + PP Y +
Sbjct: 68 SPPPPPKKPYKYPSPPPPVYKYKSPPPPVYKYKSPPPPVYKYKSPPPPVHSPPPPHYVYS 247
Query: 56 SQAPPTGS 63
S PP S
Sbjct: 248 SPPPPVYS 271
>TC88259 similar to GP|6729037|gb|AAF27033.1| unknown protein {Arabidopsis
thaliana}, partial (35%)
Length = 1757
Score = 30.4 bits (67), Expect = 1.2
Identities = 17/44 (38%), Positives = 24/44 (53%)
Frame = +3
Query: 301 AKMEMMANFREIRNRELDLQQADQQLKQSELQLRQEELKFKKAE 344
+K E A+ R R L+ + + Q ELQ R EEL+F+ AE
Sbjct: 786 SKAEAAASIRSDLQRRLEAVEKENSSLQLELQSRLEELEFRIAE 917
>TC79086 similar to GP|23499033|emb|CAD51113. ubiquitin-protein ligase 1
putative {Plasmodium falciparum 3D7}, partial (0%)
Length = 1418
Score = 30.4 bits (67), Expect = 1.2
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Frame = +2
Query: 217 VKDEPKWKGQSMKTNSRGQKKSGAGADGTSTDPSASIDCDEYEAT----PPTTRPKGKKA 272
VKD+P + ++ + +++ + A +S + E EA PP T PK
Sbjct: 74 VKDDPPPQEDKIEQHDENDEETSSEAGSSSEGGEEEEESSEEEAPKTTPPPKTNPKNNSV 253
Query: 273 EKRKAKTTDT 282
E + TDT
Sbjct: 254 EDEDEEETDT 283
>AW559485 weakly similar to GP|23394429|gb| crinkling and necrosis-inducing
protein CRN2 {Phytophthora infestans}, partial (10%)
Length = 744
Score = 30.0 bits (66), Expect = 1.6
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 33 PLHPDENFTNPQYPMYPPQYQFQSQAPP 60
P HP+ N ++ +P+YPP F++ P
Sbjct: 294 PTHPESNRSSTAHPLYPPVIPFRNPVHP 211
>AW584244 similar to GP|8886934|gb F2D10.25 {Arabidopsis thaliana}, partial
(12%)
Length = 591
Score = 30.0 bits (66), Expect = 1.6
Identities = 17/55 (30%), Positives = 33/55 (59%), Gaps = 5/55 (9%)
Frame = +1
Query: 307 ANFREIRNRELDLQQADQQLKQSE-----LQLRQEELKFKKAENFRAYMDILNKN 356
A FR+I+ R+++LQQA +++Q LQ+R + ++ + FRA+ + K+
Sbjct: 412 AKFRDIQERKVELQQAIVKMEQGGSADGILQVRADRIQSDLEQLFRAFDERCKKH 576
>TC78902
Length = 686
Score = 29.6 bits (65), Expect = 2.0
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = -2
Query: 11 HHPGGNFQNSQYQMFPYTSQNQ---PLHPDENFTNPQYPMYPPQYQF 54
HHP N NS + NQ H ++NF Q+P++PP QF
Sbjct: 682 HHPXSNHSNSTLLTXSPSHSNQMNPQHHKNDNF---QHPIFPP*SQF 551
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.313 0.129 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,841,178
Number of Sequences: 36976
Number of extensions: 168810
Number of successful extensions: 1063
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of query: 382
length of database: 9,014,727
effective HSP length: 98
effective length of query: 284
effective length of database: 5,391,079
effective search space: 1531066436
effective search space used: 1531066436
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)
Lotus: description of TM0079b.3