TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0079b.1
         (1571 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BQ122291                                                              127  3e-29
TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative ret...   125  1e-28
BG587170 similar to PIR|F86470|F8 probable retroelement polyprot...   119  7e-27
BI262917 weakly similar to GP|19920130|g Putative retroelement {...    82  2e-15
BI266628                                                               79  2e-14
BG586273 weakly similar to PIR|F86470|F8 probable retroelement p...    69  1e-11
TC92872                                                                51  8e-11
BF649643 similar to PIR|H86486|H86 protein Ty1/copia-element pol...    55  2e-07
BG582205                                                               54  4e-07
BE239977 weakly similar to GP|23237899|db polyprotein-like {Oryz...    52  1e-06
BQ154516                                                               52  2e-06
AW691018 weakly similar to GP|2462935|em open reading frame 1 {B...    51  3e-06
AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsi...    49  2e-05
AW736233 GP|21105451|gb small nuclear ribonucleoprotein D1 {Dani...    47  8e-05
AJ499215 weakly similar to GP|6642775|gb| gag-pol polyprotein {V...    43  8e-04
TC92013 homologue to GP|11595557|emb|CAC18142. related to c-modu...    43  0.001
BG586255 similar to GP|7682800|gb Hypothetical protein T15F17.l ...    42  0.002
AW773859                                                               41  0.003
TC80054 SP|Q28009|FUS_BOVIN RNA-binding protein FUS (Pigpen prot...    41  0.004
TC93151 homologue to GP|22136928|gb|AAM91808.1 unknown protein {...    41  0.004

>BQ122291 
          Length = 487

 Score =  127 bits (320), Expect = 3e-29
 Identities = 58/153 (37%), Positives = 96/153 (61%)
 Frame = -2

Query: 74  DEDRANSVENPAFLVWEQHDSALFTWLLSSLSPSVLPTVVNCQHSWQIWEAVLDFFHAHS 133
           D  R     NPA+  WE  DS L TW+LS +SPS+L   V  +HSWQ+W+ +  +     
Sbjct: 486 DAAREAGTRNPAYTEWEDKDSLLCTWILSRISPSLLSRFVLLRHSWQVWDEIHSYCFTQM 307

Query: 134 LAQSTQLRSELRSITKGSKNTSDYLKRIKSIVNALISIGDPVTYREHLEAIFDGLREDYS 193
             +S QLRSELRSITKGS+  S+++ RI++I  +L SIGDPV++R+ +E + + L E++ 
Sbjct: 306 KTRSRQLRSELRSITKGSRTVSEFIARIRAISESLASIGDPVSHRDLIEVVLEALPEEFD 127

Query: 194 HLMTIVTSREFPCSISQAEAMVIAHEARLDRLR 226
            ++  V ++    S+ + E+ ++  E+R ++ +
Sbjct: 126 PIVASVNAKSEVVSLDELESQLLTQESRKEKFK 28


>TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative retroelement
           {Oryza sativa} [Oryza sativa (japonica cultivar-group)],
           partial (10%)
          Length = 823

 Score =  125 bits (315), Expect = 1e-28
 Identities = 83/238 (34%), Positives = 116/238 (47%), Gaps = 15/238 (6%)
 Frame = +1

Query: 692 LELIFADLWGPASIESSAGYSYFLTCVDAFSRFTWIYLLKRKSETSTVFIQFQAMVELKF 751
           L+ I +DLWGP+ + S  G  Y +T +D F R  W+Y L+ K+ET   F +++ +VE + 
Sbjct: 97  LDYIHSDLWGPSKVTSYGGRRYMMTIIDDFPRKVWVYFLRYKNETFPTFKKWRILVETQT 276

Query: 752 GLKIKSVQTDGGTEF--KPLLPHFLKLGITHRLTCPHTHHQNGSVERKHRHIVETGLSLL 809
           G  +K + TD   EF            GI    T P    QNG  ER  R ++E    +L
Sbjct: 277 GKNVKKLITDN*LEFCSSDFNEFCTNHGIARHKTIPRNPQQNGVAERMIRTLLERARCML 456

Query: 810 ACANMPT--SYWDHAFLTATFLINRLPTPVLGNLSPYHKLFKVP--------ADYKILRV 859
           + A +      W  A  TA  L+NR P   L         FKVP         DY  LR+
Sbjct: 457 SNAGL*N*RDLWVEAASTACHLVNRSPHSALD--------FKVPEDIWSGNLVDYSNLRI 612

Query: 860 FGSACYPHLRPYNSSKLSFRSQECVFLGYSSSHKGYKCLASD---GRIYISKDVQFNE 914
           FG   Y  +   N  KL+ R+ EC+FL Y+S  KGY+   SD    ++ +S+DV FNE
Sbjct: 613 FGCPAYALV---NDGKLAPRAGECIFLSYASESKGYRLWCSDPKSQKLILSRDVTFNE 777


>BG587170 similar to PIR|F86470|F8 probable retroelement polyprotein
           [imported] - Arabidopsis thaliana, partial (13%)
          Length = 718

 Score =  119 bits (299), Expect = 7e-27
 Identities = 76/209 (36%), Positives = 110/209 (52%), Gaps = 5/209 (2%)
 Frame = -3

Query: 635 LWHSRLGHPHYETLQSALTTCKISVPHKSKYTICHSCCVAKSHRLPSSASSTLYTAPLEL 694
           LWH+RLGHPH   L   L      V  ++K   C +C + K  +     +ST+Y    +L
Sbjct: 584 LWHARLGHPHGRALNLMLP----GVVFENKN--CEACILGKHCKNVFPRTSTVYENCFDL 423

Query: 695 IFADLWGPASIESSAGYSYFLTCVDAFSRFTWIYLLKRKSETSTVFIQFQAMVELKFGLK 754
           I+ DLW   S+ S   + YF+T +D  S++TW+ L+  K      F  FQA V   +  K
Sbjct: 422 IYTDLWTAPSL-SRDNHKYFVTFIDEKSKYTWLTLIPSKDRVIDAFKNFQAYVTNHYHAK 246

Query: 755 IKSVQTDGGTE-----FKPLLPHFLKLGITHRLTCPHTHHQNGSVERKHRHIVETGLSLL 809
           IK +++D G E     FK  L H    GI H+ +CP+T  QNG  +RK++H++E   SL+
Sbjct: 245 IKILRSDNGGEYTSYAFKSHLDHH---GILHQTSCPYTPQQNGVAKRKNKHLMEVARSLM 75

Query: 810 ACANMPTSYWDHAFLTATFLINRLPTPVL 838
             AN+          TA +LIN +PT VL
Sbjct: 74  FQANVS---------TACYLINWIPTKVL 15


>BI262917 weakly similar to GP|19920130|g Putative retroelement {Oryza
           sativa} [Oryza sativa (japonica cultivar-group)],
           partial (8%)
          Length = 426

 Score = 81.6 bits (200), Expect = 2e-15
 Identities = 42/110 (38%), Positives = 60/110 (54%)
 Frame = +1

Query: 786 HTHHQNGSVERKHRHIVETGLSLLACANMPTSYWDHAFLTATFLINRLPTPVLGNLSPYH 845
           HT  QNG  ER +R ++E   ++L  A M  S+W  A  TA ++INR P+ V+   +P  
Sbjct: 82  HTPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTVIDLKTPME 261

Query: 846 KLFKVPADYKILRVFGSACYPHLRPYNSSKLSFRSQECVFLGYSSSHKGY 895
                P DY  L VFG   Y        +KL  +S++C+FLGY+ + KGY
Sbjct: 262 MWKGKPVDYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGY 411


>BI266628 
          Length = 536

 Score = 78.6 bits (192), Expect = 2e-14
 Identities = 39/95 (41%), Positives = 59/95 (62%), Gaps = 7/95 (7%)
 Frame = -1

Query: 32  LLLKLDDSNF-------LSWKQHVEGIVRTHRLQSFLLHQPEIPPRFLSDEDRANSVENP 84
           +++K+D SN        L WKQ VEG++R  +   F++  P+IPP +L+DE R    + P
Sbjct: 455 VVIKVDPSNKQVLS*VRLQWKQQVEGVLRETKTVKFVI-SPQIPPVYLTDEAREAGTKKP 279

Query: 85  AFLVWEQHDSALFTWLLSSLSPSVLPTVVNCQHSW 119
           A+  WE+ DS L TW+LS++ PS+L   V  +HSW
Sbjct: 278 AYTEWEEQDSLLCTWILSTI*PSLLSRFVLLRHSW 174


>BG586273 weakly similar to PIR|F86470|F8 probable retroelement polyprotein
           [imported] - Arabidopsis thaliana, partial (7%)
          Length = 705

 Score = 69.3 bits (168), Expect = 1e-11
 Identities = 36/90 (40%), Positives = 56/90 (62%), Gaps = 1/90 (1%)
 Frame = -2

Query: 826 ATFLINRLPTPVLGNLSPYHKLFKVPADYKILRVFGSACYPHLRPYNSSKLSFRSQECVF 885
           A +LINR+PT VL + +P+  L +       +RVFG  CY  +     +KL  RS++ +F
Sbjct: 704 ACYLINRIPTRVLKDQAPFEVLNQRKPSLTYMRVFGCLCYVLVPGELRNKLEARSRKAMF 525

Query: 886 LGYSSSHKGYKCLASDG-RIYISKDVQFNE 914
           +GYS++ KGYKC   +  R+ +S+DV+F E
Sbjct: 524 IGYSTTQKGYKCYDPEARRVLVSRDVKFIE 435


>TC92872 
          Length = 923

 Score = 50.8 bits (120), Expect(2) = 8e-11
 Identities = 37/165 (22%), Positives = 74/165 (44%)
 Frame = +1

Query: 24  SSTSLVHKLLLKLDDSNFLSWKQHVEGIVRTHRLQSFLLHQPEIPPRFLSDEDRANSVEN 83
           SS  L   +  KL   NF +WK+ V  ++    +   +     I    + +     S  N
Sbjct: 73  SSLILNASITFKLSRKNFRAWKRQVTTLLAGIEVMGHIDGTTPIQTETIINN--GVSAPN 246

Query: 84  PAFLVWEQHDSALFTWLLSSLSPSVLPTVVNCQHSWQIWEAVLDFFHAHSLAQSTQLRSE 143
           P +  W   D  +   LLSS++ +   +  + + +  +W A+   F+  S +    + ++
Sbjct: 247 PDYTKWFTLDQLIINLLLSSMTEADSISFASYETARTLWVAIESQFNNTSRSHVMSVTNQ 426

Query: 144 LRSITKGSKNTSDYLKRIKSIVNALISIGDPVTYREHLEAIFDGL 188
           ++  TKG K+ +DYL  +KS+ + L  I   ++  +    + +GL
Sbjct: 427 IQRCTKGDKSITDYLFSVKSLADELAVIDKSLSDDDITLFVLNGL 561



 Score = 35.4 bits (80), Expect(2) = 8e-11
 Identities = 35/155 (22%), Positives = 64/155 (40%), Gaps = 1/155 (0%)
 Frame = +2

Query: 191 DYSHLMTIVTSREFPCSISQAEAMVIAHEARLDRLRLRQHAASSPSAFLAQATAPPQSTP 250
           +Y+ +   + +R+ P +  +  + ++AH+  L R  + Q     P+A  A  T+P Q + 
Sbjct: 569 EYNDIAASIRTRQHPFTFEELHSHLLAHDDYLRREAV-QVDIQVPTANFAHHTSPNQRSS 745

Query: 251 QAPPLVPSQSPAPPQAPPPVAIAPPSSEVNYISRTGSDDRAYEDRDDDRSRSDDNRDRGG 310
           +   ++P                P +   N  S+              +S+   +  RG 
Sbjct: 746 KDDGILP---------------IPSTGRGNNFSK--------------QSQHHGSNTRGS 838

Query: 311 -YNNRGRGGRGSYNNRGRGGDRSSVQCQICHKYGH 344
            Y  RGRG    +N+RG   +R   +CQ+C   GH
Sbjct: 839 NYRGRGRG----FNSRG---NRPPPRCQLCSLLGH 922


>BF649643 similar to PIR|H86486|H86 protein Ty1/copia-element polyprotein
           [imported] - Arabidopsis thaliana, partial (2%)
          Length = 608

 Score = 55.5 bits (132), Expect = 2e-07
 Identities = 31/135 (22%), Positives = 66/135 (47%), Gaps = 1/135 (0%)
 Frame = +1

Query: 35  KLDDSNFLSWKQHVEGIVRTHRLQSFLLHQPEIPPRFLSDEDRANSVENPA-FLVWEQHD 93
           KL+ +N+ SW + +   +       F+    + P          + V+ PA + +W + +
Sbjct: 172 KLNGTNYSSWSRSMVHALTAKNKVGFINGSIKTP----------SEVDQPAEYALWNRCN 321

Query: 94  SALFTWLLSSLSPSVLPTVVNCQHSWQIWEAVLDFFHAHSLAQSTQLRSELRSITKGSKN 153
           S + +WL  S+ P +   V++ + + Q+WE   D F   ++    Q++  L S+++G+ +
Sbjct: 322 SMILSWLTHSVEPDLAKGVIHAKTACQVWEDFKDQFSQKNIPAIYQIQKSLASLSQGTVS 501

Query: 154 TSDYLKRIKSIVNAL 168
            S Y  +IK + + L
Sbjct: 502 ASTYFTKIKGLWDEL 546


>BG582205 
          Length = 801

 Score = 54.3 bits (129), Expect = 4e-07
 Identities = 52/164 (31%), Positives = 78/164 (46%), Gaps = 15/164 (9%)
 Frame = +3

Query: 652 LTTCKISVPHKSKYT-ICHSCCVAKSHRLPSSASSTLYTAPLELIFADLWGPASIESSAG 710
           LT  K+ + ++ K +  C  CC+ K+HRLPS                  + P  +  S  
Sbjct: 342 LTVLKLHLVYQIKLSDFCSFCCLGKAHRLPS------------------FHPLYLTLSLL 467

Query: 711 YSYFLTCVDAFSR---------FTWIYLLKRKSETS--TVFIQFQAMVELKFGL--KIKS 757
            S+F+ C D  SR         F++   +  K+E S  T+F  F+ +VEL++ L  ++ S
Sbjct: 468 NSFFVICGDYSSRVFFNLCGCLFSF*LDISFKTEVSHFTIFQNFKRIVELQYKLLHQVCS 647

Query: 758 VQTDGGTEFKPLLPHFLKLG-ITHRLTCPHTHHQNGSVERKHRH 800
               GG EF+P + +   LG   H LT      + GSVERKHRH
Sbjct: 648 NCLRGG-EFRPFITYLNNLG*PAHTLTT-----KMGSVERKHRH 761


>BE239977 weakly similar to GP|23237899|db polyprotein-like {Oryza sativa
           (japonica cultivar-group)}, partial (2%)
          Length = 514

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
 Frame = -2

Query: 837 VLGNLSPYHKLFKVPADYKIL-RVFGSACYPHLRPYNSSKLSFRSQECVFLGYSSSHKGY 895
           VL +  PY     VP    +  R+FG   + H+     SK   R+ +CVF+ YSS+ KGY
Sbjct: 507 VLPSFYPY-----VPTSNNLTPRIFGCTSFVHIHSDGRSKFDHRALKCVFIRYSSTQKGY 343

Query: 896 KCLASDGRIY-ISKDVQFNE 914
           +C     R Y +S+DV F+E
Sbjct: 342 RCYHPPSRKYFVSRDVTFHE 283


>BQ154516 
          Length = 506

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 34/102 (33%), Positives = 54/102 (52%)
 Frame = +1

Query: 567 QDTCKTLLRGSLGSDGLYSFDGMHSSNFHKDLPQVPVSSAFSLSKPASPAVNTIVSTSNN 626
           +D+ + LL G +GSDGLY F         K L  +P S + SLS   +  ++++V  S++
Sbjct: 232 KDSKQILLEGVVGSDGLYQF---------KPLQFLP-SMSKSLSYCNNATISSVVCNSSS 381

Query: 627 VPSPTAYDLWHSRLGHPHYETLQSALTTCKISVPHKSKYTIC 668
             S  +++ WH RLGH +   ++S L  CKI   +K     C
Sbjct: 382 -SSNDSFNKWHCRLGHANPNVVKSILNLCKIPFQNKHVLDFC 504



 Score = 44.3 bits (103), Expect = 4e-04
 Identities = 20/51 (39%), Positives = 29/51 (56%)
 Frame = +3

Query: 455 PQTMLASAPSTLGNWHPDSGATHHVTHDASAISDGMSVTGNDQVYMGNGQG 505
           P    AS+  +   W+PDSGA+HH+T +   ++      G +QV M NGQG
Sbjct: 84  PSEYAASSSYSEAPWYPDSGASHHLTFNPHNLAYRTPYNGQEQVLMDNGQG 236


>AW691018 weakly similar to GP|2462935|em open reading frame 1 {Brassica
           oleracea}, partial (12%)
          Length = 639

 Score = 51.2 bits (121), Expect = 3e-06
 Identities = 23/89 (25%), Positives = 48/89 (53%)
 Frame = +2

Query: 77  RANSVENPAFLVWEQHDSALFTWLLSSLSPSVLPTVVNCQHSWQIWEAVLDFFHAHSLAQ 136
           +A S ++P   +W++ +  + TW+L S+ P +  +V+    +  +W  + D F     ++
Sbjct: 299 KAPSADDPKLPLWKRCNDLVLTWILHSIEPDIARSVIFSDTAAAVWSDLHDRFSQGDESR 478

Query: 137 STQLRSELRSITKGSKNTSDYLKRIKSIV 165
             Q+R E+    +GS   SDY  ++KS++
Sbjct: 479 IYQIRQEISECRQGSLLISDYYTKLKSLL 565


>AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsis thaliana},
            partial (9%)
          Length = 675

 Score = 48.9 bits (115), Expect = 2e-05
 Identities = 57/174 (32%), Positives = 77/174 (43%)
 Frame = +2

Query: 1085 TIHGLWSLFPRAGIQ*GVNGFLESKRMQMGQ*IDIKPG*LPRVIIK*KALTMQKSFLQ** 1144
            T HG+  LF         +GF+E K+ QM    ++KP *  RV +K   +   K  L **
Sbjct: 140  TKHGILFLFLHTRKLLAASGFIELKKTQMDLLTNLKPD*WLRVSVKHLDVITLKLSLL** 319

Query: 1145 SQSPFV*FSLWLFPKGRIFTNWM*IMLFFMGLSKKRFTCNNQLDFRILTKHLCAS*IKPY 1204
            + S    FS  L      F   +  M F M   K++  C N  D ++L    CAS*    
Sbjct: 320  NLSLSGSFSPLLSLINGKFNKLISTMPF*MVFFKRKCICLNLRDLKLLINLWCAS*TNHS 499

Query: 1205 MGLNKLLGLGLTG*RQL*SSMGSKQVVVIPLSLLFTTSLMSSTY*SMWMILSSL 1258
            M  +K    G+  *     S+ S +VVVI   L      ++S  * MWM  SSL
Sbjct: 500  MA*SKHHVHGMRX*PVHKFSLVSLKVVVIHHYLSTIKMELASIX*YMWMTFSSL 661


>AW736233 GP|21105451|gb small nuclear ribonucleoprotein D1 {Danio rerio},
           partial (14%)
          Length = 510

 Score = 46.6 bits (109), Expect = 8e-05
 Identities = 54/217 (24%), Positives = 86/217 (38%), Gaps = 2/217 (0%)
 Frame = +1

Query: 187 GLREDYSHLMTIVTSREFPCSISQAEAMVIAHEARLDRLRLRQHAASSPSAFLAQATAPP 246
           GL E+Y+  + ++  R    S+ + E++++  EA+ ++ R ++    S SA LAQ+  P 
Sbjct: 1   GLLEEYNSFVLVIYIRLDSPSMEEGESILMMQEAQFEKYR-QELTNPSVSANLAQSELPS 177

Query: 247 QSTPQAPPLVPSQSPAPPQAPPPVAIAPPSSEVNYISRTGSDDRAYEDRDDDRSRSDDNR 306
           +                          P +SE   +                        
Sbjct: 178 K--------------------------PGNSESQEVGTE--------------------- 216

Query: 307 DRGGYNNRGRG-GRGSYNNRGRGGDRSS-VQCQICHKYGHDASVCYYRGNSTSPATNSQP 364
               Y N GRG GRG    RGRG   S+ +QCQIC +  HDA+ C +R +    A++SQ 
Sbjct: 217 ----YYNAGRGRGRGRGRGRGRGRSNSNRLQCQICARNNHDAARCCFRYDQ---ASSSQA 375

Query: 365 NMTNQAPAPVAPTFGFGSSFGMMPQFGYSPFRGFQPY 401
           +  ++AP          S     P  G S    F P+
Sbjct: 376 H--HRAPPSEYAASSSYSEAPWYPDSGASHHLTFNPH 480



 Score = 33.9 bits (76), Expect = 0.51
 Identities = 14/32 (43%), Positives = 19/32 (58%)
 Frame = +1

Query: 449 ARHIRAPQTMLASAPSTLGNWHPDSGATHHVT 480
           A H   P    AS+  +   W+PDSGA+HH+T
Sbjct: 373 AHHRAPPSEYAASSSYSEAPWYPDSGASHHLT 468


>AJ499215 weakly similar to GP|6642775|gb| gag-pol polyprotein {Vitis
           vinifera}, partial (18%)
          Length = 567

 Score = 43.1 bits (100), Expect = 8e-04
 Identities = 34/125 (27%), Positives = 56/125 (44%)
 Frame = +3

Query: 454 APQTMLASAPSTLGNWHPDSGATHHVTHDASAISDGMSVTGNDQVYMGNGQGLPIQSIGS 513
           A  T     PS    W  DSG THH+THD     + ++ +   +V M NG  + ++ IG+
Sbjct: 69  AMSTFATKQPSKY--WLIDSGCTHHMTHDRDLFKE-LNKSTISKVRMLNGAHIEVEGIGT 239

Query: 514 ASFSSPIHTQTTLLLKNLLLVPNITKNLVSVSKFAQDNGVYFEFHPFHCTVNSQDTCKTL 573
               S    +    + N+L  P + ++L+SV +     G    F    C +  Q+  K +
Sbjct: 240 VLVKSHSGYKQ---ISNVLYAPKLNQSLLSVPQLL-TKGYKVLFEHEKCVIKDQNN-KEV 404

Query: 574 LRGSL 578
           LR  +
Sbjct: 405 LRAQM 419


>TC92013 homologue to GP|11595557|emb|CAC18142. related to c-module-binding
           factor {Neurospora crassa}, partial (2%)
          Length = 1437

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 33/101 (32%), Positives = 40/101 (38%)
 Frame = -2

Query: 231 AASSPSAFLAQATAPPQSTPQAPPLVPSQSPAPPQAPPPVAIAPPSSEVNYISRTGSDDR 290
           AAS  S   + +  P  S P  PP   S+   PP  P  V +    S++   S   S + 
Sbjct: 491 AASPSSVSSSDSGIPGASPPPPPPTSSSRRGRPPAGPTVVRLG--ESDLESESEISSSES 318

Query: 291 AYEDRDDDRSRSDDNRDRGGYNNRGRGGRGSYNNRGRGGDR 331
                     R    R RGG   RG GGRG    RGRG  R
Sbjct: 317 ESGIGGSPAMRGPSMRGRGGGRGRG-GGRGRGRGRGRGRGR 198


>BG586255 similar to GP|7682800|gb Hypothetical protein T15F17.l {Arabidopsis
           thaliana}, partial (12%)
          Length = 436

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 30/105 (28%), Positives = 45/105 (42%)
 Frame = -1

Query: 786 HTHHQNGSVERKHRHIVETGLSLLACANMPTSYWDHAFLTATFLINRLPTPVLGNLSPYH 845
           H H QNG  E   + I      LL  +  P S W HA L A  LI   P+      SP  
Sbjct: 388 HVHTQNGLAESFIKRIQLITRPLLMRSKQPVSAWGHAVLHAAELIRIRPSSE-HKYSPSQ 212

Query: 846 KLFKVPADYKILRVFGSACYPHLRPYNSSKLSFRSQECVFLGYSS 890
            L     D   ++ FG   Y  + P + +K+  + +  +++G+ S
Sbjct: 211 LLSGHVPDVSHIKTFGYPVYVPIAPPHRTKMGPQRRMGIYVGFDS 77


>AW773859 
          Length = 538

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 4/105 (3%)
 Frame = -3

Query: 607 FSLSKPASPAVNTIVSTSNNVPSPTAYD---LWHSRLGHPHYETLQSALTTCK-ISVPHK 662
           + L+   +P+     S     P PT      LWH RLGH     L S  +    I++   
Sbjct: 323 YFLTTQDTPSATIASSQVQPQPQPTFLPQEALWHFRLGHLSNRKLLSLHSNFPFITIDQN 144

Query: 663 SKYTICHSCCVAKSHRLPSSASSTLYTAPLELIFADLWGPASIES 707
           S   ICH    ++  +LP   S+   +   EL   D+WGP S +S
Sbjct: 143 SVCDICH---YSRHKKLPFQLSTNRASKCYELFHFDIWGPFSTQS 18


>TC80054 SP|Q28009|FUS_BOVIN RNA-binding protein FUS (Pigpen protein).
           [Bovine] {Bos taurus}, partial (4%)
          Length = 988

 Score = 40.8 bits (94), Expect = 0.004
 Identities = 81/306 (26%), Positives = 119/306 (38%), Gaps = 18/306 (5%)
 Frame = +1

Query: 241 QATAPPQSTPQAPPLVPSQSPAPPQAPPPVAIA-------PPSSEVNYISRTGSDDR--A 291
           Q+TA  Q +         Q P  P  P P A         PPS+  N   +  S D   A
Sbjct: 7   QSTATTQQSTYDYYNQQPQQPQNPGGPAPPADGTAYNYSQPPSAGYNQPGQGYSQDGYGA 186

Query: 292 YEDRDDDRSRSDDNRDRG-GYNNRGRGGRGS-YNNRGRGGDRSSVQCQICHKYGHDASVC 349
           Y+           + D+  GY +   G   + Y ++G+G D + V      + G+     
Sbjct: 187 YQQPPQSGYAQPTSYDQQQGYGSAQEGQTTTNYGSQGQG-DATQVPPVQPSQQGY----- 348

Query: 350 YYRGNSTSPATNSQPNMTNQAPAP---VAPTFGFGSSFGMMPQF--GYSPFRGFQPYGAP 404
              G+S  P+ N+       A  P   V PT    +++G  PQ   GY P +  +P G P
Sbjct: 349 ---GSSQQPSPNAAKYPPQGAAQPSYGVPPTSQ--TAYGSQPQTQSGYGPPQTQKPSGTP 513

Query: 405 SPFGMS-FPNSGFGSGSPYASGGMFTPPGYGFGSGYGFGLPPRAPARHIRAPQTMLASAP 463
             +G S  PN+  G G P        P GY    GY    PP  P+ +    Q     AP
Sbjct: 514 PAYGQSQSPNAAGGYGQPGYPPSQPPPSGYS-QPGYPPSQPP--PSGY---SQPGYGQAP 675

Query: 464 STLGNWHPDSGATHHVTHDASAISDGMSVTGNDQVYMGNGQGLPIQSIGSASFS-SPIHT 522
            +      +SG+       A A S   + +GN +   G+  G P Q    AS + SP   
Sbjct: 676 QSY-----NSGSYGAGYPQAPAYSADGNASGNAR--GGSYDGAPAQGAQQASVAKSPQS* 834

Query: 523 QTTLLL 528
            T++L+
Sbjct: 835 CTSMLI 852


>TC93151 homologue to GP|22136928|gb|AAM91808.1 unknown protein {Arabidopsis
           thaliana}, partial (4%)
          Length = 657

 Score = 40.8 bits (94), Expect = 0.004
 Identities = 30/78 (38%), Positives = 39/78 (49%), Gaps = 2/78 (2%)
 Frame = +3

Query: 353 GNSTSP-ATNSQPNMTNQAPAPVAPTFGFGSSFGMMPQFGYSPFRGFQPYG-APSPFGMS 410
           G+S SP +T + P  T  AP+    +F FGSS  +   FG SP         APS FG +
Sbjct: 198 GSSPSPFSTTTNPTSTATAPS----SFNFGSSSSL---FGASPASSTPAAASAPSIFGSA 356

Query: 411 FPNSGFGSGSPYASGGMF 428
              S FG G+P   G +F
Sbjct: 357 TAGSPFGGGTPSTPGNLF 410



 Score = 32.3 bits (72), Expect = 1.5
 Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = +3

Query: 353 GNSTSPATNSQPNMTNQAPAPVAPTFGFGSSFGMMPQFGYSPFRGFQP-YGAPSPFGMSF 411
           G + S +T +   M   A    +  FGFGSS    P FG        P +GAPS    S 
Sbjct: 444 GGAASGSTTASTTMFGGASPATSTAFGFGSSASSTP*FGAPSSASSTPLFGAPS----ST 611

Query: 412 PNSGFGSGS 420
           P+ G  + S
Sbjct: 612 PSFGVAASS 638


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.331    0.142    0.455 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,163,148
Number of Sequences: 36976
Number of extensions: 1093399
Number of successful extensions: 15874
Number of sequences better than 10.0: 347
Number of HSP's better than 10.0 without gapping: 8123
Number of HSP's successfully gapped in prelim test: 427
Number of HSP's that attempted gapping in prelim test: 2025
Number of HSP's gapped (non-prelim): 12060
length of query: 1571
length of database: 9,014,727
effective HSP length: 109
effective length of query: 1462
effective length of database: 4,984,343
effective search space: 7287109466
effective search space used: 7287109466
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 65 (29.6 bits)