TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0076a.12
         (430 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BI270896 similar to PIR|F96729|F967 probable alliinase F5A18.26 ...    54  2e-07
TC77238 similar to GP|15289767|dbj|BAB63467. putative aspartate ...    36  0.033
TC82766 similar to GP|3128183|gb|AAC16087.1| unknown protein {Ar...    30  1.4
TC78617 similar to PIR|T03270|T03270 probable histidinol-phospha...    30  1.4
TC80834 similar to GP|6002279|emb|CAB56741.1 cytochrome P450 mon...    29  3.1
AW584181 PIR|S68824|S68 rngB protein  cytosolic - slime mold (Di...    29  4.0
TC90157 similar to PIR|T51853|T51853 RING-H2 finger protein RHF1...    29  4.0
TC82570 similar to PIR|T51853|T51853 RING-H2 finger protein RHF1...    29  4.0
TC78219 similar to PIR|A96720|A96720 hypothetical protein T6C23....    28  5.2
TC88958 similar to PIR|D86441|D86441 unknown protein [imported] ...    28  6.8
TC92304 similar to GP|11993475|gb|AAG42756.1 ubiquitin-specific ...    28  8.9
TC79124 1-aminocyclopropanecarboxylic acid synthase [Medicago tr...    28  8.9

>BI270896 similar to PIR|F96729|F967 probable alliinase F5A18.26 [imported] -
           Arabidopsis thaliana, partial (12%)
          Length = 608

 Score = 53.5 bits (127), Expect = 2e-07
 Identities = 19/60 (31%), Positives = 37/60 (61%)
 Frame = +1

Query: 67  LNLDKGDPLVFGKYWKKKSEECMVVIKGCELMSYLSDTSNVCWYMLPELKDAIERLHHVV 126
           +NLD GDP ++ +YW++  ++  ++I G + MSY SD +++CW+    +      +H+ V
Sbjct: 397 INLDHGDPTMYERYWRQMGDKTTIIIPGWQSMSYFSDPTSICWFP*ARIFKGSXEVHNXV 576


>TC77238 similar to GP|15289767|dbj|BAB63467. putative aspartate transaminase
            {Oryza sativa (japonica cultivar-group)}, partial (98%)
          Length = 1876

 Score = 35.8 bits (81), Expect = 0.033
 Identities = 32/95 (33%), Positives = 46/95 (47%), Gaps = 11/95 (11%)
 Frame = +3

Query: 203  IEVVNYPNNPDGT-IKEPMVKSIVE------GKLVHDLAYYWPHYTPITH---QANHDVM 252
            + VVN P NP GT I E ++K I          LV D  Y +  +  + H   + NH V 
Sbjct: 954  VTVVN-PGNPTGTYIPESLLKRIANLCEKAGSWLVVDNTYEYFMFDDLKHTCVEGNHVVN 1130

Query: 253  LFTLSKCTGHAGSRIGW-AIVKDIEVAKKMVMFVQ 286
            +F+ SK  G  G RIG+ A   ++E     ++ VQ
Sbjct: 1131 IFSFSKAYGMMGWRIGYIAYPSEVEGLGSQLLKVQ 1235


>TC82766 similar to GP|3128183|gb|AAC16087.1| unknown protein {Arabidopsis
           thaliana}, partial (10%)
          Length = 690

 Score = 30.4 bits (67), Expect = 1.4
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
 Frame = -1

Query: 7   TSRIYINVCHSSHLTTRFMSTKQ---KQRARGFFQEHTLYPSMVVAKAASPIN-----KN 58
           TS +Y+N+CH  H++   MS  Q    +  R   +    + S++  K    +      + 
Sbjct: 243 TSVLYLNLCHQQHISNVSMSRLQLK*GEVFRDI*RRRRRF*SLMAMKNRKLLKSEWNFRK 64

Query: 59  GFTSPSSTLN 68
           GF SPSST N
Sbjct: 63  GFHSPSSTRN 34


>TC78617 similar to PIR|T03270|T03270 probable histidinol-phosphate
           transaminase (EC 2.6.1.9) - common tobacco, partial
           (86%)
          Length = 1707

 Score = 30.4 bits (67), Expect = 1.4
 Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 7/100 (7%)
 Frame = +3

Query: 209 PNNPDGT-IKEPMVKSIVEGKLVHDLAYYWPHYTPITHQAN----HD--VMLFTLSKCTG 261
           PNNPDG+ I +  +  I+E  ++  L   +  ++ I  + +    HD  ++L T SK  G
Sbjct: 717 PNNPDGSIIDDDDLLKILELPILVVLDEAYIEFSTIESKMSWVKKHDNLIVLRTFSKRAG 896

Query: 262 HAGSRIGWAIVKDIEVAKKMVMFVQMSSIGVAKESQTRAA 301
            AG R+G+     + + K +    Q  ++ VA E    AA
Sbjct: 897 LAGLRVGYGAF-PLSIIKYLWRAKQPYNVSVAAEISACAA 1013


>TC80834 similar to GP|6002279|emb|CAB56741.1 cytochrome P450 monooxygenase
           {Cicer arietinum}, partial (62%)
          Length = 1112

 Score = 29.3 bits (64), Expect = 3.1
 Identities = 14/31 (45%), Positives = 18/31 (57%)
 Frame = +2

Query: 348 FTVAKYPKAYCNFANESFEALPAFVWLKCEE 378
           F  A+Y KA+C F  E FE +  F W K E+
Sbjct: 740 F*FARY*KAFCCFC*EGFEYI*EFCWGKVED 832


>AW584181 PIR|S68824|S68 rngB protein  cytosolic - slime mold (Dictyostelium
           discoideum), partial (1%)
          Length = 636

 Score = 28.9 bits (63), Expect = 4.0
 Identities = 15/47 (31%), Positives = 25/47 (52%)
 Frame = +3

Query: 199 NETYIEVVNYPNNPDGTIKEPMVKSIVEGKLVHDLAYYWPHYTPITH 245
           N  +++ VN P   DGT+ EP+ +     K+V++    WP  T + H
Sbjct: 501 NARFVDDVNIP---DGTVLEPLTQFHKIWKMVNNGDINWPEGTILVH 632


>TC90157 similar to PIR|T51853|T51853 RING-H2 finger protein RHF1a
           [imported] - Arabidopsis thaliana (fragment), partial
           (44%)
          Length = 1486

 Score = 28.9 bits (63), Expect = 4.0
 Identities = 10/26 (38%), Positives = 19/26 (72%)
 Frame = -1

Query: 321 QLFFEYCKNILRERWEKLRRSIELRK 346
           ++  +YCKN+ +   +KL++ +ELRK
Sbjct: 205 RILSKYCKNLQKSHHQKLKKRMELRK 128


>TC82570 similar to PIR|T51853|T51853 RING-H2 finger protein RHF1a
           [imported] - Arabidopsis thaliana (fragment), partial
           (23%)
          Length = 738

 Score = 28.9 bits (63), Expect = 4.0
 Identities = 10/26 (38%), Positives = 19/26 (72%)
 Frame = -2

Query: 321 QLFFEYCKNILRERWEKLRRSIELRK 346
           ++  +YCKN+ +   +KL++ +ELRK
Sbjct: 233 RILSKYCKNLQKSHHQKLKKRMELRK 156


>TC78219 similar to PIR|A96720|A96720 hypothetical protein T6C23.1 [imported]
            - Arabidopsis thaliana, partial (73%)
          Length = 1483

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 16/62 (25%), Positives = 30/62 (47%), Gaps = 1/62 (1%)
 Frame = +3

Query: 236  YWPHYTPITH-QANHDVMLFTLSKCTGHAGSRIGWAIVKDIEVAKKMVMFVQMSSIGVAK 294
            +W HYTP  H Q N ++ L  +++  GH    +   I   I     +V+ + +S + +  
Sbjct: 1113 HWKHYTPQIHFQRNQNLELIIITQSQGHRNLELKIIIQPSI-----LVIIIYISQLPILL 1277

Query: 295  ES 296
            E+
Sbjct: 1278 EN 1283


>TC88958 similar to PIR|D86441|D86441 unknown protein [imported] -
           Arabidopsis thaliana, partial (29%)
          Length = 697

 Score = 28.1 bits (61), Expect = 6.8
 Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 1/109 (0%)
 Frame = +1

Query: 3   LDSCTSRIYINVCHSSHLTTRFMSTKQKQR-ARGFFQEHTLYPSMVVAKAASPINKNGFT 61
           LDSC++     +  +  L     +T Q+Q     F +++ L P  + A     +N+N F 
Sbjct: 325 LDSCSASTSDIISTTERLKQELETTTQRQEIVTCFLRDYQLSPEEINALRDEDLNENFFK 504

Query: 62  SPSSTLNLDKGDPLVFGKYWKKKSEECMVVIKGCELMSYLSDTSNVCWY 110
           + S    +                  C V++K         DTS+ CW+
Sbjct: 505 ALSHVQEIHAN---------------CKVLLK---------DTSSACWF 579


>TC92304 similar to GP|11993475|gb|AAG42756.1 ubiquitin-specific protease 15
           {Arabidopsis thaliana}, partial (8%)
          Length = 652

 Score = 27.7 bits (60), Expect = 8.9
 Identities = 10/40 (25%), Positives = 25/40 (62%)
 Frame = +1

Query: 311 YQKFESIEPDQLFFEYCKNILRERWEKLRRSIELRKVFTV 350
           Y  +E+   +++   YC ++LR++W K+++  E + V ++
Sbjct: 343 YWTYENDGFEEINKTYCTSLLRKQWSKIQKGKEYKDVVSL 462


>TC79124 1-aminocyclopropanecarboxylic acid synthase [Medicago truncatula]
          Length = 1862

 Score = 27.7 bits (60), Expect = 8.9
 Identities = 48/202 (23%), Positives = 79/202 (38%), Gaps = 42/202 (20%)
 Frame = +3

Query: 109 WYMLPELKDAIERLHHVVR-NAVTKDK-YIVIGTGTTQLFMAALFALSPSMTTSHPINVV 166
           ++ LPE ++A+ +     R N VT D   IV+  G T    A  F L+           +
Sbjct: 450 YHGLPEFRNAVAKFMSRTRGNRVTFDPDRIVMSGGATGAHEATAFCLADPGDA-----FL 614

Query: 167 SATPYYSEYKDQL---------DLFC--SERFQWGGDAGE--YDK-NETYIEV----VNY 208
             TPYY  +   L          + C  +  F+    A E  Y+K  E  I +    +  
Sbjct: 615 VPTPYYPGFDRDLRWRTGVKLVPVICESANNFKLTKQALEEAYEKATEDNIRIKGLLITN 794

Query: 209 PNNPDGTIKEP----MVKSIVEGKLVHDLA--------YYWPHYTPITHQANHDV----- 251
           P+NP GT+ +      V + +  K +H ++        +  P +  I     HD      
Sbjct: 795 PSNPLGTVMDRNTLRTVVNFINEKRIHLISDEIYAATVFSHPSFISIAEILEHDTDIECD 974

Query: 252 -----MLFTLSKCTGHAGSRIG 268
                ++++LSK  G  G R+G
Sbjct: 975 RNLVHIVYSLSKDMGFPGFRVG 1040


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.320    0.135    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,610,479
Number of Sequences: 36976
Number of extensions: 183416
Number of successful extensions: 956
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of query: 430
length of database: 9,014,727
effective HSP length: 99
effective length of query: 331
effective length of database: 5,354,103
effective search space: 1772208093
effective search space used: 1772208093
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)