BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0076a.11
(428 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC86754 homologue to PIR|C96633|C96633 probable Serine/Threonine... 798 0.0
TC86753 homologue to PIR|C96633|C96633 probable Serine/Threonine... 768 0.0
TC77095 homologue to GP|9758499|dbj|BAB08907.1 AP47/50p {Arabido... 355 2e-98
BE124224 similar to GP|13872908|db putative clathrin-associated ... 270 1e-72
TC78717 similar to GP|7269305|emb|CAB79365.1 clathrin coat assem... 253 1e-67
BE124920 similar to PIR|C96633|C96 probable Serine/Threonine pro... 197 5e-51
TC87512 similar to PIR|F96607|F96607 probable clathrin-associate... 157 1e-38
TC83699 similar to GP|7269305|emb|CAB79365.1 clathrin coat assem... 103 1e-22
TC82451 similar to GP|7269305|emb|CAB79365.1 clathrin coat assem... 101 6e-22
TC77986 homologue to PIR|E84551|E84551 clathrin assembly protein... 40 0.001
TC89478 homologue to GP|17149110|gb|AAL35901.1 clathrin assembly... 35 0.072
TC87228 homologue to GP|7259348|dbj|BAA92779.1 nonclathrin coat ... 34 0.12
AJ502302 weakly similar to GP|454894|emb| Mnt1 protein {Saccharo... 30 1.4
TC86025 similar to GP|7677262|gb|AAF67098.1| delta-COP {Zea mays... 28 5.2
TC84669 homologue to GP|21536926|gb|AAM61258.1 unknown {Arabidop... 28 8.9
TC87374 similar to PIR|T52310|T52310 Lil3 protein [imported] - A... 28 8.9
>TC86754 homologue to PIR|C96633|C96633 probable Serine/Threonine protein
kinase F8A5.29 [imported] - Arabidopsis thaliana,
partial (98%)
Length = 1947
Score = 798 bits (2062), Expect = 0.0
Identities = 399/429 (93%), Positives = 416/429 (96%), Gaps = 1/429 (0%)
Frame = +1
Query: 1 MAGAASALFLLDIKGRVLIWRDYRGDVTALDAERFFTKLIEKQADAQSQDPVVHDNGISY 60
M+GAASALFLLDIKGR+L+WRDYRGDV+A++AERFFTKLI+KQAD QSQDPVV+DNG++Y
Sbjct: 256 MSGAASALFLLDIKGRILVWRDYRGDVSAIEAERFFTKLIDKQADEQSQDPVVYDNGVTY 435
Query: 61 MFVQHSNVYLMIATRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEI 120
MF+QHSNVYL+IA RQNCNAASLLFFLHR+VDVFKHYFEELEEESLRDNFVVVYELLDEI
Sbjct: 436 MFIQHSNVYLVIAARQNCNAASLLFFLHRLVDVFKHYFEELEEESLRDNFVVVYELLDEI 615
Query: 121 MDFGYPQYTEAKIL-SEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGISYKKNEVFLDVVE 179
MDFGYPQYT K FIKTDAYRMEVTQRPPMAVTNAVSWRSEGISYKKNEVFLDVVE
Sbjct: 616 MDFGYPQYTRGKDS*VNFIKTDAYRMEVTQRPPMAVTNAVSWRSEGISYKKNEVFLDVVE 795
Query: 180 SVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRTTKGKAIDLEDI 239
SVNILVNSNGQ+IRSDVVGALKMRT+LSGMPECKLGLNDRVLLEAQGRTTKGKAIDLEDI
Sbjct: 796 SVNILVNSNGQLIRSDVVGALKMRTFLSGMPECKLGLNDRVLLEAQGRTTKGKAIDLEDI 975
Query: 240 KFHQCVRLARFENDRTISFIPPDGAFDLMTYRLSTQVKPLIWVEATVEKHSKSRIEIMVK 299
KFHQCVRLARFENDRTISFIPPDG+FDLMTYRLSTQVKPLIWVEA VEKHSKSRIEIMVK
Sbjct: 976 KFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEANVEKHSKSRIEIMVK 1155
Query: 300 ARSQFKERSTATNVEIELPVPVDAMNPNVRTSMGSAAYAPEKDALIWKIRSFPGGKEYML 359
ARSQFKERSTATNVEIELPVPVDA NPNVRTSMGSA+YAPEKDALIWKIRSFPGGKEYML
Sbjct: 1156ARSQFKERSTATNVEIELPVPVDATNPNVRTSMGSASYAPEKDALIWKIRSFPGGKEYML 1335
Query: 360 RAEFRLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITM 419
RAEFRLPSIT EEA PERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITM
Sbjct: 1336RAEFRLPSITDEEAAPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITM 1515
Query: 420 AGEYELRLI 428
AGEYELRLI
Sbjct: 1516AGEYELRLI 1542
>TC86753 homologue to PIR|C96633|C96633 probable Serine/Threonine protein
kinase F8A5.29 [imported] - Arabidopsis thaliana,
complete
Length = 1624
Score = 768 bits (1983), Expect(2) = 0.0
Identities = 383/408 (93%), Positives = 396/408 (96%)
Frame = +1
Query: 1 MAGAASALFLLDIKGRVLIWRDYRGDVTALDAERFFTKLIEKQADAQSQDPVVHDNGISY 60
M+GAASALFLLDIKGRVLIWRDYRGDV+A++AERFFTKLIEK+ D QSQDPVV+DNG+SY
Sbjct: 259 MSGAASALFLLDIKGRVLIWRDYRGDVSAVEAERFFTKLIEKEGDQQSQDPVVYDNGVSY 438
Query: 61 MFVQHSNVYLMIATRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEI 120
MFVQHSNVYLM ATRQNCNAASLLFFLHR+VDVFKHYFEELEEESLRDNFVVVYELLDEI
Sbjct: 439 MFVQHSNVYLMTATRQNCNAASLLFFLHRIVDVFKHYFEELEEESLRDNFVVVYELLDEI 618
Query: 121 MDFGYPQYTEAKILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGISYKKNEVFLDVVES 180
MDFGYPQYTEAKILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEG++YKKNEVFLDVVES
Sbjct: 619 MDFGYPQYTEAKILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGLNYKKNEVFLDVVES 798
Query: 181 VNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRTTKGKAIDLEDIK 240
VNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDR+LLEAQGR TKGKAIDLEDIK
Sbjct: 799 VNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRATKGKAIDLEDIK 978
Query: 241 FHQCVRLARFENDRTISFIPPDGAFDLMTYRLSTQVKPLIWVEATVEKHSKSRIEIMVKA 300
FHQCVRLARFENDRTISFIPPDG+FDLMTYRLSTQVKPL WVEA VEKHSKSRIEI VKA
Sbjct: 979 FHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLFWVEAQVEKHSKSRIEITVKA 1158
Query: 301 RSQFKERSTATNVEIELPVPVDAMNPNVRTSMGSAAYAPEKDALIWKIRSFPGGKEYMLR 360
RSQFKERSTATNVEIELPVP DA PNVRTSMGSAAYAPEKDALIWKIRSFPGGKEYMLR
Sbjct: 1159RSQFKERSTATNVEIELPVPADATTPNVRTSMGSAAYAPEKDALIWKIRSFPGGKEYMLR 1338
Query: 361 AEFRLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGY 408
AEFRLPSIT EEA PERKAPIR+KFEIPYFTVSGIQVRYLKIIEKSGY
Sbjct: 1339AEFRLPSITDEEAAPERKAPIRLKFEIPYFTVSGIQVRYLKIIEKSGY 1482
Score = 51.6 bits (122), Expect(2) = 0.0
Identities = 22/28 (78%), Positives = 26/28 (92%)
Frame = +2
Query: 401 KIIEKSGYQALPWVRYITMAGEYELRLI 428
+++ K+G QALPWVRYITMAGEYELRLI
Sbjct: 1460 RLLRKAGIQALPWVRYITMAGEYELRLI 1543
>TC77095 homologue to GP|9758499|dbj|BAB08907.1 AP47/50p {Arabidopsis
thaliana}, complete
Length = 1798
Score = 355 bits (911), Expect = 2e-98
Identities = 192/440 (43%), Positives = 276/440 (62%), Gaps = 14/440 (3%)
Frame = +1
Query: 1 MAGAASALFLLDIKGRVLIWRDYRGDVTALDAERFFTKLIEKQADAQSQDPVVHDNGISY 60
M AASA++ L+++G VLI R YR DV + F T ++ Q PV G S+
Sbjct: 202 MPVAASAVYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIM--QTKELGTCPVKQIGGCSF 375
Query: 61 MFVQHSNVYLMIATRQNCNAASLLFFLHRVVDVFKHYFE-ELEEESLRDNFVVVYELLDE 119
+++ SNVY++I N N A F+ V +FK YF +E+++R+NFV++YELLDE
Sbjct: 376 FYMRISNVYIVIVVSTNANVACAFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDE 555
Query: 120 IMDFGYPQYTEAKILSEFIKTDAYRM----EVTQRP----PMAVTNAVSWRSEGISYKKN 171
IMDFGYPQ +IL +I + R + ++RP + VT AV WR EG+ YKKN
Sbjct: 556 IMDFGYPQNLSPEILKLYITQEGVRSPFSSKASERPVPNATLQVTGAVGWRREGLVYKKN 735
Query: 172 EVFLDVVESVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGR---- 227
EVFLD+VESVN+L++S G ++R DV G + M+ +LSGMP+ KLGLND++ LE + +
Sbjct: 736 EVFLDIVESVNLLMSSKGVVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQLKSR 915
Query: 228 -TTKGKAIDLEDIKFHQCVRLARFENDRTISFIPPDGAFDLMTYRLSTQVKPLIWVEATV 286
T GK I+L+D+ FHQCV L RF +++T+SF+PPDG F+LM YR++ V V T+
Sbjct: 916 PTKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFKVLPTI 1095
Query: 287 EKHSKSRIEIMVKARSQFKERSTATNVEIELPVPVDAMNPNVRTSMGSAAYAPEKDALIW 346
++ ++R+E+ VK +S F + A V +++PVP + + G A Y D L+W
Sbjct: 1096KELGRTRMEVNVKVKSVFGAKMFALGVVVKIPVPKQTAKTSFTVTSGRAKYNAAIDCLVW 1275
Query: 347 KIRSFPGGKEYMLRAEFRLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKS 406
KIR FPG E L AE L S E+ + R PI+++F++P FT SG++VR+LK+ EKS
Sbjct: 1276KIRKFPGQTEPTLSAEIELISTMTEKKSWTR-PPIQMEFQVPMFTASGLRVRFLKVWEKS 1452
Query: 407 GYQALPWVRYITMAGEYELR 426
GY + WVRYIT AG YE+R
Sbjct: 1453GYNTVEWVRYITKAGSYEIR 1512
>BE124224 similar to GP|13872908|db putative clathrin-associated protein
{Oryza sativa (japonica cultivar-group)}, partial (34%)
Length = 486
Score = 270 bits (689), Expect = 1e-72
Identities = 139/161 (86%), Positives = 147/161 (90%)
Frame = +3
Query: 179 ESVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRTTKGKAIDLED 238
ESVNILVNSNGQ+IRSDVVGAL+MRT+LSGMPECKLGLNDRVLLEAQGRTTKGKAI LED
Sbjct: 3 ESVNILVNSNGQLIRSDVVGALRMRTFLSGMPECKLGLNDRVLLEAQGRTTKGKAIYLED 182
Query: 239 IKFHQCVRLARFENDRTISFIPPDGAFDLMTYRLSTQVKPLIWVEATVEKHSKSRIEIMV 298
I ++ RL +R ISFIPPDG+FDLMTYRLSTQVKPLIWVEA VEKHSKSRIEIMV
Sbjct: 183 INIYRRCRLCI*PRERYISFIPPDGSFDLMTYRLSTQVKPLIWVEANVEKHSKSRIEIMV 362
Query: 299 KARSQFKERSTATNVEIELPVPVDAMNPNVRTSMGSAAYAP 339
KARSQFKERSTATNVEIELPVPVDA NPNV TSMGSA+YAP
Sbjct: 363 KARSQFKERSTATNVEIELPVPVDATNPNVPTSMGSASYAP 485
>TC78717 similar to GP|7269305|emb|CAB79365.1 clathrin coat assembly like
protein {Arabidopsis thaliana}, partial (93%)
Length = 1531
Score = 253 bits (646), Expect = 1e-67
Identities = 148/443 (33%), Positives = 239/443 (53%), Gaps = 21/443 (4%)
Frame = +3
Query: 6 SALFLLDIKGRVLIWRDYRGDVTALDAERFFTKLIEKQADAQSQDPVVHD-NGISYMFVQ 64
S F+L +G +++RDYRG+V AE FF K+ + DA P V + +G++Y V+
Sbjct: 75 SQFFVLSQRGDNIVFRDYRGEVQKGSAETFFRKVKFWKEDADGDAPPVFNVDGVNYFHVK 254
Query: 65 HSNVYLMIATRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEIMDFG 124
+ + + TR N + + +L LHR V K Y L E+S R NFV+VYELLDE++DFG
Sbjct: 255 VAGLLFVATTRINVSPSLVLELLHRTARVIKDYLGVLNEDSFRKNFVLVYELLDEVIDFG 434
Query: 125 YPQYTEAKILSEFIKTDAYRMEVTQ---------------RPPMAVTNAVSWRSEGISYK 169
Y Q T ++L ++ + +E +Q P A+T +V G K
Sbjct: 435 YVQTTSTEVLKSYVFNEPIVIESSQMPLGPASIFMQGTKRMPGTAITKSVVANEPG-GRK 611
Query: 170 KNEVFLDVVESVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRTT 229
++E+F+DV+E +++ NS+G I+ S++ G ++M++YL+G PE +L LN+ + +
Sbjct: 612 RDEIFVDVIEKISLTFNSSGFILTSEIDGTIQMKSYLTGNPEIRLALNEDLSIGTSDYRG 791
Query: 230 KGKAIDLEDIKFHQCVRLARFENDRTISFIPPDGAFDLMTYRLSTQVKPLIWVEATVEKH 289
G A+ L+D FH+ V L F+ DRT+S +PPDG F +M YR++ KP + A +E+
Sbjct: 792 SG-AVILDDCNFHESVHLDSFDIDRTLSLVPPDGEFPVMNYRITQAFKPPFRINALIEET 968
Query: 290 SKSRIEIMVKARSQFKERSTATNVEIELPVPVDAMNPNVRTSMGSAAYAPE-KDA---LI 345
+ E+ +K R++F A V + +P+P N G+ + + K+A L
Sbjct: 969 GPLKAEVTIKVRAEFNSSINANTVLVRMPLPAFTARVNFELEPGAVGHTTDFKEANKKLE 1148
Query: 346 WKIRSFPGGKEYMLRAEFRLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEK 405
W ++ GG E+ LRA+ S + P+ + F IP + S +QV+YL+I +K
Sbjct: 1149WGLKKVVGGSEHTLRAKLTF-SQELHGNIMKEAGPLSMTFTIPMYNSSRLQVKYLQIAKK 1325
Query: 406 S-GYQALPWVRYITMAGEYELRL 427
S + WVRY+T A Y RL
Sbjct: 1326SKAHNPYRWVRYVTQANSYVARL 1394
>BE124920 similar to PIR|C96633|C96 probable Serine/Threonine protein kinase
F8A5.29 [imported] - Arabidopsis thaliana, partial (26%)
Length = 583
Score = 197 bits (502), Expect = 5e-51
Identities = 92/107 (85%), Positives = 105/107 (97%)
Frame = +2
Query: 1 MAGAASALFLLDIKGRVLIWRDYRGDVTALDAERFFTKLIEKQADAQSQDPVVHDNGISY 60
M+GAASALFLLDIKGR+L+WRDYRGDV+A++AERFFTKLI+KQAD QSQDPVV+DNG++Y
Sbjct: 44 MSGAASALFLLDIKGRILVWRDYRGDVSAIEAERFFTKLIDKQADEQSQDPVVYDNGVTY 223
Query: 61 MFVQHSNVYLMIATRQNCNAASLLFFLHRVVDVFKHYFEELEEESLR 107
MF+QHSNVYL+IA RQNCNAASLLFFLHR+VDVFKHYFEELEEESLR
Sbjct: 224 MFIQHSNVYLVIAARQNCNAASLLFFLHRLVDVFKHYFEELEEESLR 364
>TC87512 similar to PIR|F96607|F96607 probable clathrin-associated adaptor
protein F25P12.96 [imported] - Arabidopsis thaliana,
partial (97%)
Length = 1620
Score = 157 bits (396), Expect = 1e-38
Identities = 116/435 (26%), Positives = 204/435 (46%), Gaps = 16/435 (3%)
Frame = +1
Query: 8 LFLLDIKGRVLIWRDYRGDVTALDAERFFTKLIEKQADAQSQDPVVHDNGISYMF-VQHS 66
+FLL G V++ + G +R Q + Q PV+ + Y+F V
Sbjct: 154 IFLLSDSGEVILEKQLTGH----RVDRSICNWFWDQPHSFKQQPVIA-SPTHYLFQVFRD 318
Query: 67 NVYLMIATRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEIMDFGYP 126
+ + T+ + FL RV DV Y L E+S++DNFV+VYELLDE++D G+P
Sbjct: 319 GITFLACTQVEMPPLMAIEFLCRVADVINDYLGGLNEDSIKDNFVIVYELLDEMIDNGFP 498
Query: 127 QYTEAKILSEFIK-----------TDAYRMEVTQRPPMAVTNAVSWRSEGISYKKNEVFL 175
TE IL E I V+ P + + V WR+ Y NEV++
Sbjct: 499 LTTEPNILQEMIAPPNIVSKVLSVVTGNSSNVSDTLPGSTASCVPWRTADPKYANNEVYV 678
Query: 176 DVVESVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRTTKGKAID 235
D+VE ++ +N +G +++ ++ G +++ ++++G+P+ L + +
Sbjct: 679 DLVEQMDATINRDGTLVKCEINGEVQVNSHITGLPDLTLSFTNPSI-------------- 816
Query: 236 LEDIKFHQCVRLARFENDRTISFIPPDGAFDLMTYRLSTQVKPLIWVEATVEKHSKS-RI 294
L+D++FH CVR +E+++ +SF+PPDG F LM YR+ I+V+ + + R+
Sbjct: 817 LDDVRFHPCVRFRPWESNQILSFVPPDGQFKLMNYRVRKLKSTPIYVKPQLTSDGGTCRL 996
Query: 295 EIMVKARSQFKERSTATNVEIELPVPVDAMNPNVRTSMGSAAYAPEKDALIWKIRSFPGG 354
+MV R+ + + NV+ +LP + ++ ++ ++ G+ K W I P
Sbjct: 997 NVMVGMRNDPGKTVDSVNVQFQLPPCI--LSADLTSTHGTVNILSNK-TCTWSIGRIPKD 1167
Query: 355 KEYMLRAEFRLPSITAEEATPERK---APIRVKFEIPYFTVSGIQVRYLKIIEKSGYQAL 411
K + L E ER +V F I +SG+++ L ++ Y+
Sbjct: 1168KAPSMSGTLVL------ETGMERLHVFPTFQVDFRIMGVALSGLKIDKLD-LKTVPYRFY 1326
Query: 412 PWVRYITMAGEYELR 426
R +T AGE+E+R
Sbjct: 1327KGFRALTRAGEFEVR 1371
>TC83699 similar to GP|7269305|emb|CAB79365.1 clathrin coat assembly like
protein {Arabidopsis thaliana}, partial (49%)
Length = 691
Score = 103 bits (258), Expect = 1e-22
Identities = 55/171 (32%), Positives = 89/171 (51%), Gaps = 4/171 (2%)
Frame = +1
Query: 241 FHQCVRLARFENDRTISFIPPDGAFDLMTYRLSTQVKPLIWVEATVEKHSKSRIEIMVKA 300
FH+ VRL FE +RT+S IPPDG F +M YR++ KP + A +E+ + E+ +K
Sbjct: 175 FHESVRLDSFETNRTLSLIPPDGEFPVMNYRMTQPFKPPFRINALIEEAGSLKAEVFLKL 354
Query: 301 RSQFKERSTATNVEIELPVPVDAMNPNVRTSMGSAA----YAPEKDALIWKIRSFPGGKE 356
++F TA +++++P+P + G+ + L W ++ GG E
Sbjct: 355 SAEFASSITANTIKVQMPLPKYTTRVSFELEPGATGQTTDFREANKKLEWSLKKINGGSE 534
Query: 357 YMLRAEFRLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSG 407
+ LRA+ + T E P+ + F IP VS +QV+YL+I +KSG
Sbjct: 535 HTLRAKLTFSQESHGNITKE-SGPVSMTFTIPMHNVSQLQVKYLQIGKKSG 684
>TC82451 similar to GP|7269305|emb|CAB79365.1 clathrin coat assembly like
protein {Arabidopsis thaliana}, partial (42%)
Length = 669
Score = 101 bits (251), Expect = 6e-22
Identities = 59/172 (34%), Positives = 96/172 (55%), Gaps = 4/172 (2%)
Frame = +1
Query: 6 SALFLLDIKGRVLIWRDYRGDVTALDAERFFTKL-IEKQADAQSQDPVVHDNGISYMFVQ 64
S F+L +G +++RDYRG+V AE FF K+ + + Q PV + +G++Y V+
Sbjct: 106 SQFFVLSQRGDNIVFRDYRGEVPRGSAEIFFRKVKFWEDGELQEAPPVFNVDGVNYFHVK 285
Query: 65 HSNVYLMIATRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEIMDFG 124
+ + TR N + + + L R+ V K Y L E+SLR NFV+VYELLDE++DFG
Sbjct: 286 VVGLLFVATTRVNISPSFVFELLQRIARVIKDYLGILNEDSLRKNFVLVYELLDEVIDFG 465
Query: 125 YPQYTEAKILSEFIKTDAYRMEVTQRPPM---AVTNAVSWRSEGISYKKNEV 173
Y Q T ++L +I + ++ + P+ A+ + + R GI+ K+ V
Sbjct: 466 YVQTTSTELLKSYIFNEPLVIDAARLSPLGPAAIFSQGTKRMPGIAVTKSVV 621
>TC77986 homologue to PIR|E84551|E84551 clathrin assembly protein AP19
small subunit [imported] - Arabidopsis thaliana,
complete
Length = 920
Score = 40.4 bits (93), Expect = 0.001
Identities = 23/104 (22%), Positives = 48/104 (46%)
Frame = +3
Query: 57 GISYMFVQHSNVYLMIATRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYEL 116
G ++ +++++Y + N +L +H V++ YF + E L NF Y +
Sbjct: 303 GHKVVYKRYASLYFCMCIDDADNELEVLEMIHHFVEILDRYFGSVCELDLIFNFHKAYYI 482
Query: 117 LDEIMDFGYPQYTEAKILSEFIKTDAYRMEVTQRPPMAVTNAVS 160
LDEI+ G Q + K ++ I +E + +++N ++
Sbjct: 483 LDEILIAGELQESSKKTVARLIAAQDSLVETAKEEASSLSNIIA 614
>TC89478 homologue to GP|17149110|gb|AAL35901.1 clathrin assembly protein
AP17-like protein {Oryza sativa}, complete
Length = 786
Score = 34.7 bits (78), Expect = 0.072
Identities = 20/76 (26%), Positives = 37/76 (48%)
Frame = +3
Query: 61 MFVQHSNVYLMIATRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEI 120
++ +++ ++ + N + L +H V++ H+F + E L NF VY +LDE
Sbjct: 237 IYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEF 416
Query: 121 MDFGYPQYTEAKILSE 136
+ G Q T K + E
Sbjct: 417 ILAGELQETSKKAIIE 464
>TC87228 homologue to GP|7259348|dbj|BAA92779.1 nonclathrin coat protein
zeta1-COP {Glycine max}, complete
Length = 899
Score = 33.9 bits (76), Expect = 0.12
Identities = 33/146 (22%), Positives = 70/146 (47%), Gaps = 7/146 (4%)
Frame = +3
Query: 8 LFLLDIKGRVLIWRDYRGD----VTALDAERF-FTKLIEKQADAQSQDPVVHDNGISYMF 62
+ LLD +G+ + + Y D + L E+F FTK ++ A +++ ++ +N + Y F
Sbjct: 105 ILLLDSEGKRVAVKYYSDDWPTNSSKLAFEKFVFTKTVKTNARTEAEITLLENNIVVYKF 284
Query: 63 VQHSNVYLMIATRQN--CNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEI 120
VQ + ++ +N ++ L F V + + +++ +N ++ LDEI
Sbjct: 285 VQDLHFFVTGGDDENELILSSVLQGFFDAVTLLLR---SNVDKSEALENLDLILLCLDEI 455
Query: 121 MDFGYPQYTEAKILSEFIKTDAYRME 146
+D G T +++E K ++ M+
Sbjct: 456 VDGGIILETNGPLIAE--KVTSHNMD 527
>AJ502302 weakly similar to GP|454894|emb| Mnt1 protein {Saccharomyces
cerevisiae}, partial (48%)
Length = 656
Score = 30.4 bits (67), Expect = 1.4
Identities = 31/130 (23%), Positives = 47/130 (35%), Gaps = 27/130 (20%)
Frame = +1
Query: 39 LIEKQADAQSQDPVVHDNGISYMFVQHSNVYLMIATRQNCNAASLLFFLHRVVDVFKHY- 97
L+ K +D V++ + + Y R C S F+ H ++D + Y
Sbjct: 139 LVNKNMAKMKEDDVIYGDSLPY--------------RHMCRFESGFFYRHELLDKYDFYW 276
Query: 98 ----------------FEELEEESLRDNFVV-VYE-------LLDEIMDF--GYPQYTEA 131
F L+E ++ F V +YE L D + +F YPQY E
Sbjct: 277 RVEPGVQFFCDIDFDPFMYLKENDIKYTFTVSLYEYQKTIPTLWDSVKEFMKKYPQYIEK 456
Query: 132 KILSEFIKTD 141
EFI D
Sbjct: 457 DNSIEFISDD 486
>TC86025 similar to GP|7677262|gb|AAF67098.1| delta-COP {Zea mays}, partial
(90%)
Length = 1890
Score = 28.5 bits (62), Expect = 5.2
Identities = 39/190 (20%), Positives = 72/190 (37%), Gaps = 14/190 (7%)
Frame = +1
Query: 173 VFLDVVESVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRTTKGK 232
+ L V E +N+ + +G + DV G L ++ L D + + Q +T + +
Sbjct: 949 ITLTVEEKLNVTLKRDGGLSNFDVQGTLSLQI---------LNKEDGHV-QVQVQTGENQ 1098
Query: 233 AIDLEDIKFHQCVRLARFENDRTISFIPPD-----------GAFDLMTYRLSTQVKPLIW 281
A+ K H + F N+ + P+ G L+ +R+ + + ++
Sbjct: 1099 AVSF---KTHPNMNKELFANENILGLKDPNRPFPTGQASDAGGVGLLRWRMQSTDESMVP 1269
Query: 282 VEATVEKHS---KSRIEIMVKARSQFKERSTATNVEIELPVPVDAMNPNVRTSMGSAAYA 338
+ S ++ + I +A S F R NV I +P P P+V G Y
Sbjct: 1270 LTINCWPSSAGNETYVNIEYEASSMFDLR----NVVISVPFPALREAPSVSQIDGEWRYD 1437
Query: 339 PEKDALIWKI 348
L W +
Sbjct: 1438 SRNSILEWSV 1467
>TC84669 homologue to GP|21536926|gb|AAM61258.1 unknown {Arabidopsis
thaliana}, partial (5%)
Length = 713
Score = 27.7 bits (60), Expect = 8.9
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = +2
Query: 160 SWRSEGISYKKNEVFLDVVESVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDR 219
S+ S + N+ ++ + N VNS G + V RT L +P+C+ G+ +
Sbjct: 44 SFPSASLPEPSNDTWIKLGGGANNFVNSQGARVELKVSSFSNHRTELQ*LPKCENGIEVQ 223
Query: 220 V 220
V
Sbjct: 224 V 226
>TC87374 similar to PIR|T52310|T52310 Lil3 protein [imported] - Arabidopsis
thaliana, partial (44%)
Length = 1119
Score = 27.7 bits (60), Expect = 8.9
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 30 LDAERFFTKLIEKQADAQSQD-PVVHDNGISYMFVQHSNVYLMIATRQNCNAASLLFFLH 88
+DAE K +E ++ S D PVV D I + +L A N AA + FF+
Sbjct: 557 IDAEARRRKWLETNPESSSNDNPVVFDTSIVPWWAWIKRFHLPEAELLNGRAAMIGFFMT 736
Query: 89 RVVD 92
+VD
Sbjct: 737 YLVD 748
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.321 0.137 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,202,679
Number of Sequences: 36976
Number of extensions: 131680
Number of successful extensions: 602
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of query: 428
length of database: 9,014,727
effective HSP length: 99
effective length of query: 329
effective length of database: 5,354,103
effective search space: 1761499887
effective search space used: 1761499887
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Lotus: description of TM0076a.11