BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0075.5
(667 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CB892913 similar to GP|1769897|emb lectin receptor kinase {Arabi... 66 3e-20
BG453335 weakly similar to GP|18071369|g putative gag-pol polypr... 93 4e-19
TC93065 69 1e-15
BI262818 weakly similar to GP|6642775|gb| gag-pol polyprotein {V... 77 2e-14
BQ122291 47 3e-05
TC80244 weakly similar to GP|8777419|dbj|BAA97009.1 mitotic chec... 37 0.019
BF638967 similar to GP|8777419|dbj mitotic checkpoint protein-li... 37 0.032
TC84283 similar to GP|8777419|dbj|BAA97009.1 mitotic checkpoint ... 37 0.032
TC82326 similar to SP|O81983|SYS_HELAN Seryl-tRNA synthetase (EC... 36 0.055
BF648378 similar to GP|9294677|dbj| gene_id:F14O13.28~pir||T2263... 35 0.071
TC88896 weakly similar to GP|6728968|gb|AAF26966.1| unknown prot... 33 0.35
TC89591 similar to SP|Q43093|UGS3_PEA Glycogen [starch] synthase... 33 0.35
TC90398 33 0.35
TC81230 32 0.60
TC93152 32 0.60
BG647601 weakly similar to GP|6682261|gb|A hypothetical protein ... 32 0.79
TC88938 similar to PIR|F85436|F85436 hypothetical protein AT4g36... 32 1.0
TC80464 weakly similar to GP|13548328|emb|CAC35875. putative pro... 32 1.0
TC79453 weakly similar to GP|20339360|gb|AAM19353.1 TIR-similar-... 31 1.3
TC88505 homologue to SP|O22582|H2B_GOSHI Histone H2B. [Upland co... 31 1.8
>CB892913 similar to GP|1769897|emb lectin receptor kinase {Arabidopsis
thaliana}, partial (35%)
Length = 837
Score = 66.2 bits (160), Expect(2) = 3e-20
Identities = 41/118 (34%), Positives = 63/118 (52%), Gaps = 4/118 (3%)
Frame = +3
Query: 8 YMPPILDGTNYDYWKARMMVFLKSMDSIAWKAIVKGWKHPVIASTTELKPEDKWTKKE-- 65
+ P+L G+ YD +MM L + D W+ + KG+K E + ED TK +
Sbjct: 120 FQVPLLKGSTYDNCFIKMMALLGAHD--VWEVVEKGYK--------ESQDEDSLTKAQRD 269
Query: 66 --DDEALGNSKALNVIFNGVDKNMFRLINTCTVAKEAWEILKTAHEGTSKVRMSKLQL 121
D + KAL +I+ +D++ F I+ T AKEAWE LKT+ +G KV+ +LQ+
Sbjct: 270 TLKDSRKRDKKALFLIYQALDEDEFEKISNATSAKEAWEKLKTSCQGEDKVKKVRLQI 443
Score = 50.8 bits (120), Expect(2) = 3e-20
Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Frame = +1
Query: 135 ESIYEFHMRIRDLANSTFALGEPMSEEKLARKILRSLPKRFDMKVTAIEEAQDISNIKVD 194
E + + R+ ++N E + + ++ KILRSL +F+ V IEE +D+ + ++
Sbjct: 472 ERVRVYFSRVISISNQLKRNSEKLEDVRIMEKILRSLDPKFEHIVEKIEETKDLETMTIE 651
Query: 195 ELIGSLQTFEMSLNGRSEKKAKSIT----FVSNTEEDEDQREK 233
+L GSLQ +E KK K IT + E+DE QR +
Sbjct: 652 KLQGSLQAYE-----EKHKKKKDITE*LFKMQLKEKDEGQRNE 765
>BG453335 weakly similar to GP|18071369|g putative gag-pol polyprotein {Oryza
sativa}, partial (11%)
Length = 660
Score = 92.8 bits (229), Expect = 4e-19
Identities = 48/142 (33%), Positives = 88/142 (61%)
Frame = +1
Query: 74 KALNVIFNGVDKNMFRLINTCTVAKEAWEILKTAHEGTSKVRMSKLQLLTTQFETMKMNE 133
K L +I +D+ F+ I+ T +KEA IL+ HEG KV KLQ L +F+ M+M +
Sbjct: 136 KELFLIQ*SLDEGNFKRISKSTRSKEASNILEKYHEGDDKVEQIKLQSLRRKFKLMQMED 315
Query: 134 DESIYEFHMRIRDLANSTFALGEPMSEEKLARKILRSLPKRFDMKVTAIEEAQDISNIKV 193
++ I ++ ++ ++ N A GE ++++++ KI+R+L RFD V AI E++D+ +K+
Sbjct: 316 EKKIADYISKLINVVNQIKAYGEVVTDQQIVEKIMRTLSPRFDFIVVAIHESKDVKTLKI 495
Query: 194 DELIGSLQTFEMSLNGRSEKKA 215
+EL SL+ ++ + RS +++
Sbjct: 496 EELKSSLEAHKLMVYERSSERS 561
>TC93065
Length = 783
Score = 69.3 bits (168), Expect(2) = 1e-15
Identities = 35/107 (32%), Positives = 62/107 (57%)
Frame = +2
Query: 122 LTTQFETMKMNEDESIYEFHMRIRDLANSTFALGEPMSEEKLARKILRSLPKRFDMKVTA 181
L +FE +KM E E++ EF RI + LGE +S++++ KIL LP+ F+ K+++
Sbjct: 215 LRREFEALKMKETETVREFSDRISKVVTQIRLLGEDLSDQRVVEKILVCLPEMFEAKISS 394
Query: 182 IEEAQDISNIKVDELIGSLQTFEMSLNGRSEKKAKSITFVSNTEEDE 228
+EE ++ S I V EL+ +LQ E + R E+ + +N +++
Sbjct: 395 LEENKNFSEITVAELVNALQASEQRRSLRMEENVEGAFLANNKGKNQ 535
Score = 32.3 bits (72), Expect(2) = 1e-15
Identities = 15/57 (26%), Positives = 28/57 (48%)
Frame = +3
Query: 63 KKEDDEALGNSKALNVIFNGVDKNMFRLINTCTVAKEAWEILKTAHEGTSKVRMSKL 119
+ DE +AL +I + ++F I +AKEAW L ++G+ + + K+
Sbjct: 39 RNHSDEVAKEGRALAIIHAALHDDIFIKILNLEIAKEAWSKLMEEYQGSERTKKMKV 209
>BI262818 weakly similar to GP|6642775|gb| gag-pol polyprotein {Vitis
vinifera}, partial (24%)
Length = 615
Score = 77.4 bits (189), Expect = 2e-14
Identities = 48/164 (29%), Positives = 78/164 (47%), Gaps = 2/164 (1%)
Frame = +1
Query: 1 MDARRSIYMPP--ILDGTNYDYWKARMMVFLKSMDSIAWKAIVKGWKHPVIASTTELKPE 58
MD+ S PP + DG NY W AR+ +L++ D W+A+ + ++ ++ P
Sbjct: 142 MDSETSYKAPPLPVFDGENYHIWAARIEAYLEAND--LWEAVEEDYEVLPLSDN----PT 303
Query: 59 DKWTKKEDDEALGNSKALNVIFNGVDKNMFRLINTCTVAKEAWEILKTAHEGTSKVRMSK 118
K + SKA +F V + +F I T A E W LKT +EG ++R +
Sbjct: 304 MAQIKNHKERKTRKSKARATLFAAVSEEIFTRIMTIKSAFEIWNFLKTEYEGDERIRGMQ 483
Query: 119 LQLLTTQFETMKMNEDESIYEFHMRIRDLANSTFALGEPMSEEK 162
L +FE KM E E+I E+ ++ +AN LG + + +
Sbjct: 484 ALNLIREFEMQKMKESETIKEYANKLISIANKVRLLGSELXDSR 615
>BQ122291
Length = 487
Score = 46.6 bits (109), Expect = 3e-05
Identities = 30/128 (23%), Positives = 62/128 (48%)
Frame = -2
Query: 90 LINTCTVAKEAWEILKTAHEGTSKVRMSKLQLLTTQFETMKMNEDESIYEFHMRIRDLAN 149
L++ + + +W++ H ++ + L ++ ++ ++ EF RIR ++
Sbjct: 384 LLSRFVLLRHSWQVWDEIHSYCFTQMKTRSRQLRSELRSITKGS-RTVSEFIARIRAISE 208
Query: 150 STFALGEPMSEEKLARKILRSLPKRFDMKVTAIEEAQDISNIKVDELIGSLQTFEMSLNG 209
S ++G+P+S L +L +LP+ FD V ++ ++ + +DEL L T E
Sbjct: 207 SLASIGDPVSHRDLIEVVLEALPEEFDPIVASVNAKSEV--VSLDELESQLLTQE----S 46
Query: 210 RSEKKAKS 217
R EK K+
Sbjct: 45 RKEKFKKA 22
>TC80244 weakly similar to GP|8777419|dbj|BAA97009.1 mitotic checkpoint
protein-like {Arabidopsis thaliana}, partial (35%)
Length = 1054
Score = 37.4 bits (85), Expect = 0.019
Identities = 44/219 (20%), Positives = 91/219 (41%), Gaps = 17/219 (7%)
Frame = +1
Query: 220 FVSNTEEDEDQREKDTDANI---AEAVSLLNKALKSLGRMSNTNVLDNVSDNVKNTEFQL 276
++ E + + + +T+ I + A S KA G+ L N+SD ++ + +L
Sbjct: 406 YIQLNTELQAKLQNETNLRIQAESHATSTQEKATSLEGK------LGNLSDTIQREKKRL 567
Query: 277 KDKH---ENDTTKAI-HVKALIGKCYSDAESSDGDEEELVETYKLLLAKWEESCMYGEKM 332
D H + D+ +I + A + + A +++ + E L E L ++ E +
Sbjct: 568 HDDHSQLKKDSNFSISRITANLEQMECRANNAEREAEMLKEQVDRLKDQFNECLHQKTEA 747
Query: 333 RKEVKDLIAEK----------KQLQSNNSSLQEEVKTISKLREENEKLQITNAKLQEEVT 382
K++ +++ KQLQ + EV+ KLR +E +++ KL EE +
Sbjct: 748 EKKLATFSSQEVSSTWSDVLVKQLQQELQHYESEVREARKLRSNHENIELLKEKLLEEKS 927
Query: 383 LLNSKLEGMKKSIRMMNKSTNVLEEILEVGKTVGDMEGI 421
+ K + + + ++I + D+ GI
Sbjct: 928 RRERAQSELSKLQDVQSNMKKLEDQISSWRLMIKDIPGI 1044
>BF638967 similar to GP|8777419|dbj mitotic checkpoint protein-like
{Arabidopsis thaliana}, partial (26%)
Length = 675
Score = 36.6 bits (83), Expect = 0.032
Identities = 25/109 (22%), Positives = 47/109 (42%), Gaps = 3/109 (2%)
Frame = +3
Query: 335 EVKDLIAEKKQLQSNNSSLQEEVKTISKLREENEKLQITNAKLQEEVTLLNSKLEGMKKS 394
E D + +Q SSL ++ + I +L +L++ N + EE+ +LN KL +
Sbjct: 66 EAGDESSSANPIQELESSLMKKDEYIKELESTLNELRVVNNRQHEEIKILNEKLHNEARR 245
Query: 395 IRMMNKSTNVLE---EILEVGKTVGDMEGIGFSYKSANKSASSEKQTKQ 440
I+ + + ++ L +LE GD + S + + KQ
Sbjct: 246 IKSLERESDRLRSEISLLEAKLGHGDFSSANTKVLRMVNTLSVDNEAKQ 392
>TC84283 similar to GP|8777419|dbj|BAA97009.1 mitotic checkpoint
protein-like {Arabidopsis thaliana}, partial (21%)
Length = 829
Score = 36.6 bits (83), Expect = 0.032
Identities = 25/109 (22%), Positives = 47/109 (42%), Gaps = 3/109 (2%)
Frame = +2
Query: 335 EVKDLIAEKKQLQSNNSSLQEEVKTISKLREENEKLQITNAKLQEEVTLLNSKLEGMKKS 394
E D + +Q SSL ++ + I +L +L++ N + EE+ +LN KL +
Sbjct: 137 EAGDESSSANPIQELESSLMKKDEYIKELESTLNELRVVNNRQHEEIKILNEKLHNEARR 316
Query: 395 IRMMNKSTNVLE---EILEVGKTVGDMEGIGFSYKSANKSASSEKQTKQ 440
I+ + + ++ L +LE GD + S + + KQ
Sbjct: 317 IKSLERESDRLRSEISLLEAKLGHGDFSSANTKVLRMVNTLSVDNEAKQ 463
>TC82326 similar to SP|O81983|SYS_HELAN Seryl-tRNA synthetase (EC 6.1.1.11)
(Serine--tRNA ligase) (SerRS). [Common sunflower],
partial (40%)
Length = 726
Score = 35.8 bits (81), Expect = 0.055
Identities = 24/80 (30%), Positives = 40/80 (50%)
Frame = +1
Query: 310 ELVETYKLLLAKWEESCMYGEKMRKEVKDLIAEKKQLQSNNSSLQEEVKTISKLREENEK 369
E+V+ L +W + E +RKEV + E +L+ ++ + I+K E +K
Sbjct: 178 EVVDEVINLDKEWRKRQFEFENLRKEVNKINKEVSKLKRGG---EDATEFIAKSEEIKKK 348
Query: 370 LQITNAKLQEEVTLLNSKLE 389
+ + QE + LLNSKLE
Sbjct: 349 IAEKEVEAQETLNLLNSKLE 408
>BF648378 similar to GP|9294677|dbj| gene_id:F14O13.28~pir||T22638~similar to
unknown protein {Arabidopsis thaliana}, partial (8%)
Length = 651
Score = 35.4 bits (80), Expect = 0.071
Identities = 40/143 (27%), Positives = 62/143 (42%), Gaps = 16/143 (11%)
Frame = +2
Query: 184 EAQDISNIKVDELIGSLQTFEMSLNGRSE--------KKAKSITFVSNTEEDEDQREKDT 235
E +DISNIK+DE + FE N R E KK I S+TE+DE + E +
Sbjct: 176 ETEDISNIKIDEEYA--RRFEH--NKRREDLQRYEELKKKGVIGSPSHTEDDESESESSS 343
Query: 236 DANI--------AEAVSLLNKALKSLGRMSNTNVLDNVSDNVKNTEFQLKDKHENDTTKA 287
D ++ E L K K + +V SD+ E +K ++ K+
Sbjct: 344 DDDVNNFNTKSDKEFFDALIKVKKKDPVLKQKDVKLFESDHSSEDESD-DEKSKDKEKKS 520
Query: 288 IHVKALIGKCYSDAESSDGDEEE 310
+ +K ++ K + GDEE+
Sbjct: 521 MFLKDVVAKHLIEEGPDFGDEED 589
>TC88896 weakly similar to GP|6728968|gb|AAF26966.1| unknown protein
{Arabidopsis thaliana}, partial (27%)
Length = 1097
Score = 33.1 bits (74), Expect = 0.35
Identities = 56/226 (24%), Positives = 96/226 (41%), Gaps = 12/226 (5%)
Frame = +2
Query: 176 DMKVTAIEEAQDISNIKVDELIGSLQTFEMSLNGRSEKKAKSITF--VSNTEEDEDQREK 233
+++ + E+AQ ++N K+ S+QT E+K K I + EE++ +
Sbjct: 446 EIETVSKEKAQALNNEKLSA--SSVQTL-------LEEKNKLINELEICRDEEEKTKLAM 598
Query: 234 DTDANIAEAVSLLNKALKS--LGRMSNTNVLDNVSDNVKNTEFQLKDKHENDTTKAIHVK 291
D+ A+ VS + K L + + +++K+ K+K+E+ A H
Sbjct: 599 DSLASALHEVSAEARDTKEKLLANQAEHESYETQIEDLKSDLEASKEKYESMLNDAHHE- 775
Query: 292 ALIGKCYSDAESSDGDEEELVET----YKLLLAKWEESCM--YGEKMRKEVK--DLIAEK 343
I SD E+S E ++ +L + E S M K E K DL+
Sbjct: 776 --IEDLKSDLEASKEKYESMLNDAHHEIDVLTSSIENSKMDILNSKAEWEQKEHDLVECI 949
Query: 344 KQLQSNNSSLQEEVKTISKLREENEKLQITNAKLQEEVTLLNSKLE 389
K+ + NSSL EV + L ++ E + N K +EE L + E
Sbjct: 950 KRTEEENSSLGNEVNRLISLLKKTE--EEANVKREEETQLKENMKE 1081
>TC89591 similar to SP|Q43093|UGS3_PEA Glycogen [starch] synthase
chloroplast precursor (EC 2.4.1.11) (GBSSII), partial
(16%)
Length = 722
Score = 33.1 bits (74), Expect = 0.35
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 8/71 (11%)
Frame = +1
Query: 378 QEEVTLLNSKLEGMKKSIRMMNKSTNVLEEILEVGKTVGD--------MEGIGFSYKSAN 429
++E +LN+ +E KK + + + ++++I E K V +EG G SY+S+
Sbjct: 373 EDEDDVLNATIEKSKKVLALQKE---LIQQIAERKKLVSSIDSDSIPGLEGNGISYESSE 543
Query: 430 KSASSEKQTKQ 440
KSASS+ ++
Sbjct: 544 KSASSDSNPQK 576
>TC90398
Length = 1434
Score = 33.1 bits (74), Expect = 0.35
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Frame = +3
Query: 360 ISKLREENEKLQ-ITNAKLQEEVTLLNSKLEGMKKSIRMMNKSTNVLEEILEV---GKTV 415
I K ++ KL+ + N L+EEV LNS E K +++ T+VLE+IL++ V
Sbjct: 249 IKKRCNQSSKLRPLENKDLKEEVKQLNSHCEDSKMIKNELSELTSVLEKILDILGANNWV 428
Query: 416 GDMEGIGF 423
D + GF
Sbjct: 429 VDRQSKGF 452
>TC81230
Length = 958
Score = 32.3 bits (72), Expect = 0.60
Identities = 29/129 (22%), Positives = 49/129 (37%)
Frame = +1
Query: 12 ILDGTNYDYWKARMMVFLKSMDSIAWKAIVKGWKHPVIASTTELKPEDKWTKKEDDEALG 71
IL+G+NY++W M FLK W+ + K P D + K ++
Sbjct: 235 ILNGSNYNHWAESMCGFLKGRR--LWRYVTGDKKCPTKGKD---DTADAFADKLEEWDSK 399
Query: 72 NSKALNVIFNGVDKNMFRLINTCTVAKEAWEILKTAHEGTSKVRMSKLQLLTTQFETMKM 131
N + + N ++ AKE W+ LK + + +S L +K
Sbjct: 400 NHQIITWFRNTSIPSIHMQFGRFENAKEVWDHLKQRYTISD---LSHQYQLLKDLSNLKQ 570
Query: 132 NEDESIYEF 140
+ +YEF
Sbjct: 571 QSGQPVYEF 597
>TC93152
Length = 647
Score = 32.3 bits (72), Expect = 0.60
Identities = 24/90 (26%), Positives = 34/90 (37%)
Frame = +3
Query: 17 NYDYWKARMMVFLKSMDSIAWKAIVKGWKHPVIASTTELKPEDKWTKKEDDEALGNSKAL 76
NYDYW + +L D + + P TE+ W ++ N KAL
Sbjct: 162 NYDYWSCLVRNYLLGQDLWGFVTSISESTGPRSRRETEV-----WNRR-------NGKAL 305
Query: 77 NVIFNGVDKNMFRLINTCTVAKEAWEILKT 106
++I LI A+EAW L T
Sbjct: 306 HIIQLACGPENINLIKDLQSAREAWNELST 395
>BG647601 weakly similar to GP|6682261|gb|A hypothetical protein {Arabidopsis
thaliana}, partial (6%)
Length = 734
Score = 32.0 bits (71), Expect = 0.79
Identities = 25/84 (29%), Positives = 34/84 (39%), Gaps = 7/84 (8%)
Frame = +3
Query: 304 SDGDEEELVETYKLLLAKW-------EESCMYGEKMRKEVKDLIAEKKQLQSNNSSLQEE 356
SD +E +ET + L+ KW S R+E K + K LQS L
Sbjct: 117 SDAIVDENIETARTLITKWNTVSTSSNHSNSLFTNTRQEAKRYLKAVKSLQSAMMYLVAR 296
Query: 357 VKTISKLREENEKLQITNAKLQEE 380
T KL E +Q+ KL+ E
Sbjct: 297 DSTSKKLVEAQSLMQLAIKKLENE 368
>TC88938 similar to PIR|F85436|F85436 hypothetical protein AT4g36970
[imported] - Arabidopsis thaliana, partial (28%)
Length = 1701
Score = 31.6 bits (70), Expect = 1.0
Identities = 43/211 (20%), Positives = 89/211 (41%), Gaps = 9/211 (4%)
Frame = +2
Query: 205 MSLNGRSEKKAKSITFVSNTEEDEDQREKDTDANIAEAVSLLNKALKSL---GRMSNTNV 261
+S++G S+ + +S + E++ KD N++ AVS + A + S+ N+
Sbjct: 611 VSVHGCSQMQGQSSI---PSREEKFDAFKDAGTNVSPAVSRRDMATQMSPEGSSCSSPNM 781
Query: 262 LDNVSDNVKNTEFQLKDKHENDTTKAIHVKALIGKCYSDAESSDGDEEELVETYKLLLAK 321
+ + S ++ T + V L +S + D +E ++ + +
Sbjct: 782 MTSFSASIPPT---------------LPVTDLQSISFSKMDIRDVQVDE-----RVTMTR 901
Query: 322 WEES--CMYGEKMRKEVKDLIAEKKQLQSNNSSLQEEVKTISKLREENEKL----QITNA 375
W + ++ + + V ++ +S++ + E KT+SK + E K+ + A
Sbjct: 902 WSKKHKALFTGRGSENVDSWKKKETSTRSSSWEISERSKTVSKAKREEAKITAWENLQKA 1081
Query: 376 KLQEEVTLLNSKLEGMKKSIRMMNKSTNVLE 406
K + + L KLE KK M+K N L+
Sbjct: 1082KAEAAIQKLEMKLE--KKRASSMDKIMNKLK 1168
>TC80464 weakly similar to GP|13548328|emb|CAC35875. putative protein
{Arabidopsis thaliana}, partial (19%)
Length = 1437
Score = 31.6 bits (70), Expect = 1.0
Identities = 37/186 (19%), Positives = 76/186 (39%), Gaps = 11/186 (5%)
Frame = +3
Query: 136 SIYEFHMRIRDLANSTFALGEPMSEEKLARKILRSLPKRFDMKVTAI-----------EE 184
+I F+ D T + + + + L R R K+ D +T +
Sbjct: 255 AIKYFNKSYLDTQAITCEVAQKLGDANLPRPWSRHSTKKDDKVITTDVSNHARAKEHEDN 434
Query: 185 AQDISNIKVDELIGSLQTFEMSLNGRSEKKAKSITFVSNTEEDEDQREKDTDANIAEAVS 244
+ DI + K+ + + +Q MS + +A + VSN ++ K+T++ +
Sbjct: 435 SMDIDDPKLQDFLQVMQPRAMS-----KLRANDTSVVSNDGNNQPTLNKETESTLIANHP 599
Query: 245 LLNKALKSLGRMSNTNVLDNVSDNVKNTEFQLKDKHENDTTKAIHVKALIGKCYSDAESS 304
+L+ S+ + L N + K+ + KH+ + + K+ + +SD+ESS
Sbjct: 600 ILSD--------SHVDELPNNPKSDKSRDI----KHDGVISDMDYFKSKVTTEWSDSESS 743
Query: 305 DGDEEE 310
D D +
Sbjct: 744 DDDSSD 761
>TC79453 weakly similar to GP|20339360|gb|AAM19353.1
TIR-similar-domain-containing protein TSDC {Pisum
sativum}, partial (38%)
Length = 975
Score = 31.2 bits (69), Expect = 1.3
Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 4/96 (4%)
Frame = +1
Query: 317 LLLAKWEESCMYGEKMRKEVKDLIAEKKQLQSNNSSLQEEVKTISKLREENEKLQITNAK 376
+L+ + C+Y + K +KD+ EKK+L SN+ S+QE+++ + +K+ +
Sbjct: 127 ILIKTINKLCVY--RAYKIIKDVEREKKKLISNHDSVQEKIEATD---HKTQKVNDIVLE 291
Query: 377 LQEEVTLLNSKLEGM----KKSIRMMNKSTNVLEEI 408
+EV L ++E + + R NK N L+ +
Sbjct: 292 WLKEVEKLVQEVENVTIIPEPESRYPNKMLNKLKAL 399
>TC88505 homologue to SP|O22582|H2B_GOSHI Histone H2B. [Upland cotton]
{Gossypium hirsutum}, partial (92%)
Length = 690
Score = 30.8 bits (68), Expect = 1.8
Identities = 30/106 (28%), Positives = 43/106 (40%)
Frame = +1
Query: 487 YPQSHDQPRTNPQVAPTRKEWKPSGLKEKEKKEIVKAPRHFLMTNKDVALLKSQSSGVDV 546
+ QSH R P+++ R + K EKK K+P K A K G D
Sbjct: 19 HTQSHTLNRFPPEISQFRSMAPKAEKKPAEKKPAEKSPAE----KKPKAEKKISKEGGDK 186
Query: 547 MKEWRKKFVAASSLEGSNAPSTVHASIGESVSADPNAIVPSVIHEI 592
K+ KK V + VH IG +S+ I+ S I++I
Sbjct: 187 KKKRVKKSVETYKIYIFKVLKQVHPDIG--ISSKAMGIMNSFINDI 318
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.311 0.127 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,183,638
Number of Sequences: 36976
Number of extensions: 233147
Number of successful extensions: 1239
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 1220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1235
length of query: 667
length of database: 9,014,727
effective HSP length: 102
effective length of query: 565
effective length of database: 5,243,175
effective search space: 2962393875
effective search space used: 2962393875
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)
Lotus: description of TM0075.5