BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0075.14
(356 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG585958 weakly similar to GP|22830897|dbj ORF-B {Oryza sativa (... 46 3e-05
TC90837 weakly similar to GP|22202752|dbj|BAC07409. hypothetical... 35 0.034
TC83628 similar to GP|16604352|gb|AAL24182.1 AT5g12010/F14F18_18... 32 0.29
BI271381 similar to GP|21397269|gb Unknown protein {Oryza sativa... 30 1.4
BQ149701 similar to PIR|G86160|G86 protein F10O3.17 [imported] -... 28 7.1
TC84821 weakly similar to GP|17065212|gb|AAL32760.1 Unknown prot... 27 9.2
BF520057 similar to SP|Q05753|AKR_ Ankyrin repeat protein (AKRP)... 27 9.2
TC77245 similar to GP|6630556|gb|AAF19575.1| putative alpha-L-ar... 27 9.2
>BG585958 weakly similar to GP|22830897|dbj ORF-B {Oryza sativa (japonica
cultivar-group)}, partial (13%)
Length = 769
Score = 45.8 bits (107), Expect = 3e-05
Identities = 22/32 (68%), Positives = 22/32 (68%)
Frame = +2
Query: 2 FRRRYRMQKHVFLRIVADLSSSDNYFTQRVDA 33
FRRRYRM KHVFLRIV L D YF VDA
Sbjct: 569 FRRRYRMHKHVFLRIVEALGQHDEYFQLTVDA 664
>TC90837 weakly similar to GP|22202752|dbj|BAC07409. hypothetical
protein~similar to Oryza sativa chromosome10
OSJNBa0079H13.17, partial (7%)
Length = 596
Score = 35.4 bits (80), Expect = 0.034
Identities = 29/97 (29%), Positives = 44/97 (44%), Gaps = 11/97 (11%)
Frame = +1
Query: 206 YYLADGIYPS---YPTFVKSIRLPQSE--------PDKLFAQVQERCRKDIERAFGVLQA 254
YYL D YP Y IR QS+ + F + R IER+FGVL+
Sbjct: 10 YYLVDKGYPDKEGYMVPYPRIRYHQSQFEHEPPTNAQEAFNRAHSSLRSCIERSFGVLKK 189
Query: 255 RFKIIREPARLWDIADLGIIMRSCIILHNMIVEDERD 291
R+KI+ + + + +I+ + LHN I + +D
Sbjct: 190 RWKILNKMPQFSVKTQIDVII-AAFALHNYIRINSQD 297
>TC83628 similar to GP|16604352|gb|AAL24182.1 AT5g12010/F14F18_180
{Arabidopsis thaliana}, partial (23%)
Length = 773
Score = 32.3 bits (72), Expect = 0.29
Identities = 26/107 (24%), Positives = 44/107 (40%)
Frame = +2
Query: 2 FRRRYRMQKHVFLRIVADLSSSDNYFTQRVDAAKKEGISPLAKCTTAMRMLAYGVAADAV 61
FRR +RM K F I +L SS + + ++ I + + LA G V
Sbjct: 458 FRRCFRMSKQTFNMICNELDSS----VTKKNTTLRDAIPVRQRVAVCIYRLATGEPLRLV 625
Query: 62 DEYIKIGGTTALECLRRFCNGII*LYEHEYLRAPTQEDLQRILQVSE 108
+ +G +T + + C I + ++LR P +E + Q E
Sbjct: 626 SKKFGLGISTCHKLVLEVCAAIKSVLMQKFLRWPDEETTKETKQAFE 766
>BI271381 similar to GP|21397269|gb Unknown protein {Oryza sativa (japonica
cultivar-group)}, partial (2%)
Length = 407
Score = 30.0 bits (66), Expect = 1.4
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 230 PDKLFAQVQERCRKDIERAFGVLQARFKIIR 260
P++LF R IER FGVL+ RF I++
Sbjct: 134 PEELFNYRHSSLRMTIERCFGVLKNRFPILK 226
>BQ149701 similar to PIR|G86160|G86 protein F10O3.17 [imported] - Arabidopsis
thaliana, partial (26%)
Length = 649
Score = 27.7 bits (60), Expect = 7.1
Identities = 38/144 (26%), Positives = 57/144 (39%), Gaps = 18/144 (12%)
Frame = +1
Query: 185 VEQGKAPTVSFIVNQRPYNMAYYLADGIYPSYPTFVKSIRLPQSEPDKLF-----AQVQE 239
V +G + F+ QR L + I PT + ++P + L + V
Sbjct: 94 VVKGNLLDLEFLKKQR------VLVETITSLLPTQSRKSQIPIAFLSSLLKSAIASSVST 255
Query: 240 RCRKDIERAFGVL--QARFKIIREPARLWD-------IADLGIIMRSCIILHNMIVEDER 290
CR D+ER G+ QA + I P L+ I D I+R I N+ EDE
Sbjct: 256 SCRSDLERRIGLQLDQAILEDILIPTSLYQNNNHSSTIYDTDSIVRIFSIFLNLDEEDED 435
Query: 291 DTFAQRWT----DFEQSGEGGSST 310
D+ + T DF+ G S+
Sbjct: 436 DSRMRDETEMVYDFDSPGSPKQSS 507
>TC84821 weakly similar to GP|17065212|gb|AAL32760.1 Unknown protein
{Arabidopsis thaliana}, partial (31%)
Length = 534
Score = 27.3 bits (59), Expect = 9.2
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = +3
Query: 90 EYLRAPTQEDLQRILQVSEQRGFPGMIGSIDCMHWEWKNCPKAW 133
E+L +L++ S GF GM DC HW P W
Sbjct: 303 EFLNITALSELRKDGHPSSHNGFHGM----DCTHWCVAGVPDTW 422
>BF520057 similar to SP|Q05753|AKR_ Ankyrin repeat protein (AKRP). [Mouse-ear
cress] {Arabidopsis thaliana}, partial (37%)
Length = 632
Score = 27.3 bits (59), Expect = 9.2
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2
Query: 154 SHDLWIWHAFFGCP 167
S D W+WHAFF P
Sbjct: 412 SRDNWLWHAFFQLP 371
>TC77245 similar to GP|6630556|gb|AAF19575.1| putative
alpha-L-arabinofuranosidase {Arabidopsis thaliana},
partial (89%)
Length = 2351
Score = 27.3 bits (59), Expect = 9.2
Identities = 15/40 (37%), Positives = 18/40 (44%)
Frame = -3
Query: 143 GTTTVILEAVASHDLWIWHAFFGCPGTLNDINVLDRSPVF 182
GT T + LWI FFGC + I +D S VF
Sbjct: 2130 GTITFMSFPTL*SRLWIGITFFGCEKEFSSIKFVDVSTVF 2011
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.325 0.139 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,331,905
Number of Sequences: 36976
Number of extensions: 151585
Number of successful extensions: 924
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of query: 356
length of database: 9,014,727
effective HSP length: 97
effective length of query: 259
effective length of database: 5,428,055
effective search space: 1405866245
effective search space used: 1405866245
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)
Lotus: description of TM0075.14