BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0074.7
(141 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AW685919 homologue to PIR|S25298|S252 extensin (clone Tom J-10) ... 31 0.15
AL372685 weakly similar to GP|4033606|dbj Extensin {Adiantum cap... 31 0.15
AL367277 homologue to PIR|S14974|S149 extensin class I (clone uG... 31 0.15
TC76326 homologue to PIR|C29356|C29356 hydroxyproline-rich glyco... 31 0.15
TC76563 homologue to PIR|C29356|C29356 hydroxyproline-rich glyco... 31 0.15
TC76311 homologue to GP|3204132|emb|CAA07235.1 extensin {Cicer a... 31 0.19
TC76445 similar to PIR|T07623|T07623 extensin homolog HRGP2 - so... 31 0.19
TC79280 similar to GP|21592960|gb|AAM64910.1 unknown {Arabidopsi... 31 0.19
TC82921 weakly similar to GP|10177860|dbj|BAB11212. gene_id:K18P... 30 0.32
BG644710 similar to GP|3746570|gb|A putative pyruvate oxidoreduc... 30 0.42
TC90952 similar to GP|15724316|gb|AAL06551.1 AT4g34150/F28A23_90... 30 0.42
TC90839 weakly similar to PIR|F86416|F86416 probable RNA-binding... 30 0.42
BI308837 similar to PIR|B84585|B84 hypothetical protein At2g2011... 29 0.72
TC76562 similar to PIR|T11622|T11622 extensin class 1 precursor ... 29 0.72
BF635948 similar to GP|21622312|emb putative protein {Neurospora... 29 0.72
BQ752445 similar to GP|18376387|em putative protein {Neurospora ... 28 0.95
TC87085 similar to PIR|T01511|T01511 hypothetical protein T10M13... 28 1.2
TC87084 similar to GP|2529683|gb|AAC62866.1| unknown protein {Ar... 28 1.6
TC83787 similar to GP|9757890|dbj|BAB08397.1 phosphoribosylanthr... 28 1.6
TC77337 weakly similar to GP|4019275|gb|AAC95573.1| orf 48 {Atel... 28 1.6
>AW685919 homologue to PIR|S25298|S252 extensin (clone Tom J-10) - tomato,
partial (23%)
Length = 663
Score = 31.2 bits (69), Expect = 0.15
Identities = 19/51 (37%), Positives = 20/51 (38%), Gaps = 5/51 (9%)
Frame = +1
Query: 74 YYPEDPKEDPSVPPWMSPPQYYNKDPSSKSSS-----YYSAEDPTSPKEYP 119
YY P PS PP YY K P S S YY + P SP P
Sbjct: 13 YYKSPPPPSPS-----PPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPP 150
Score = 29.3 bits (64), Expect = 0.55
Identities = 19/58 (32%), Positives = 21/58 (35%), Gaps = 16/58 (27%)
Frame = +1
Query: 74 YYPEDPKEDPSVPPWM-----------SPPQYYNKDPSSKSSS-----YYSAEDPTSP 115
YY P PS PP PP YY K P S S YY + P +P
Sbjct: 61 YYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPAP 234
Score = 26.6 bits (57), Expect = 3.6
Identities = 15/45 (33%), Positives = 16/45 (35%)
Frame = +1
Query: 74 YYPEDPKEDPSVPPWMSPPQYYNKDPSSKSSSYYSAEDPTSPKEY 118
YY P PS PP P YY P + Y P P Y
Sbjct: 157 YYKSPPPPSPSPPP----PYYYKSPP--PPAPVYKYNSPPPPVHY 273
>AL372685 weakly similar to GP|4033606|dbj Extensin {Adiantum
capillus-veneris}, partial (49%)
Length = 407
Score = 31.2 bits (69), Expect = 0.15
Identities = 19/51 (37%), Positives = 20/51 (38%), Gaps = 5/51 (9%)
Frame = +2
Query: 74 YYPEDPKEDPSVPPWMSPPQYYNKDPSSKSSS-----YYSAEDPTSPKEYP 119
YY P PS PP YY K P S S YY + P SP P
Sbjct: 254 YYKSPPPPSPS-----PPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPP 391
>AL367277 homologue to PIR|S14974|S149 extensin class I (clone uG-18) -
tomato (fragment), partial (46%)
Length = 254
Score = 31.2 bits (69), Expect = 0.15
Identities = 18/50 (36%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Frame = +1
Query: 74 YYPEDPKEDPSVPPWMSPPQYYNKDPSSKSSSY----YSAEDPTSPKEYP 119
YY P PS PP P YY P K S+ Y + P SP P
Sbjct: 100 YYKSPPPPSPSPPP----PYYYKSPPPPKEISHPPYNYKSPPPPSPSPPP 237
Score = 28.5 bits (62), Expect = 0.95
Identities = 20/58 (34%), Positives = 21/58 (35%), Gaps = 14/58 (24%)
Frame = +1
Query: 74 YYPEDPKEDPSVPPWM-----------SPPQYYNKDPSSKSSS---YYSAEDPTSPKE 117
YY P PS PP PP YY K P S S Y + P PKE
Sbjct: 4 YYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPKE 177
>TC76326 homologue to PIR|C29356|C29356 hydroxyproline-rich glycoprotein
(clone Hyp2.13) - kidney bean (fragment), partial (32%)
Length = 777
Score = 31.2 bits (69), Expect = 0.15
Identities = 19/51 (37%), Positives = 20/51 (38%), Gaps = 5/51 (9%)
Frame = +1
Query: 74 YYPEDPKEDPSVPPWMSPPQYYNKDPSSKSSS-----YYSAEDPTSPKEYP 119
YY P PS PP YY K P S S YY + P SP P
Sbjct: 46 YYKSPPPPSPS-----PPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPP 183
Score = 28.5 bits (62), Expect = 0.95
Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Frame = +1
Query: 83 PSVPPWMSPPQYYNKDPSSKSSS-----YYSAEDPTSPKEYP 119
P P PP YY K P S S YY + P SP P
Sbjct: 10 PPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPP 135
>TC76563 homologue to PIR|C29356|C29356 hydroxyproline-rich glycoprotein
(clone Hyp2.13) - kidney bean (fragment), partial (34%)
Length = 507
Score = 31.2 bits (69), Expect = 0.15
Identities = 19/51 (37%), Positives = 20/51 (38%), Gaps = 5/51 (9%)
Frame = +2
Query: 74 YYPEDPKEDPSVPPWMSPPQYYNKDPSSKSSS-----YYSAEDPTSPKEYP 119
YY P PS PP YY K P S S YY + P SP P
Sbjct: 242 YYKSPPPPSPS-----PPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPP 379
Score = 30.4 bits (67), Expect = 0.25
Identities = 20/58 (34%), Positives = 21/58 (35%), Gaps = 16/58 (27%)
Frame = +2
Query: 74 YYPEDPKEDPSVPPWM-----------SPPQYYNKDPSSKSSS-----YYSAEDPTSP 115
YY P PS PP PP YY K P S S YY + P SP
Sbjct: 290 YYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSP 463
Score = 30.0 bits (66), Expect = 0.32
Identities = 18/51 (35%), Positives = 20/51 (38%), Gaps = 5/51 (9%)
Frame = +2
Query: 74 YYPEDPKEDPSVPPWMSPPQYYNKDPS-----SKSSSYYSAEDPTSPKEYP 119
YY P PS PP YY K P K+ YY + P SP P
Sbjct: 146 YYKSPPPPSPS-----PPPPYYYKSPPPPSPIPKTPYYYKSPPPPSPSPPP 283
>TC76311 homologue to GP|3204132|emb|CAA07235.1 extensin {Cicer arietinum},
partial (77%)
Length = 973
Score = 30.8 bits (68), Expect = 0.19
Identities = 19/51 (37%), Positives = 20/51 (38%), Gaps = 5/51 (9%)
Frame = +2
Query: 74 YYPEDPKEDPSVPPWMSPPQYYNKDPSSKSSS-----YYSAEDPTSPKEYP 119
YY P PS PP YY K P S S YY + P SP P
Sbjct: 32 YYHSPPPPSPS-----PPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPP 169
Score = 30.0 bits (66), Expect = 0.32
Identities = 18/47 (38%), Positives = 19/47 (40%), Gaps = 5/47 (10%)
Frame = +2
Query: 74 YYPEDPKEDPSVPPWMSPPQYYNKDPSSKSSS-----YYSAEDPTSP 115
YY P PS PP YY K P S S YY + P SP
Sbjct: 80 YYKSPPPPSPS-----PPPPYYYKSPPPPSPSPPPPYYYQSPPPPSP 205
>TC76445 similar to PIR|T07623|T07623 extensin homolog HRGP2 - soybean
(fragment), partial (76%)
Length = 821
Score = 30.8 bits (68), Expect = 0.19
Identities = 20/62 (32%), Positives = 23/62 (36%), Gaps = 16/62 (25%)
Frame = +2
Query: 74 YYPEDPKEDPSVPPWM-----------SPPQYYNKDPSSKSSS-----YYSAEDPTSPKE 117
YY P PS PP PP YY K P S S +Y + P SP
Sbjct: 71 YYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYHYQSPPPPSPIS 250
Query: 118 YP 119
+P
Sbjct: 251 HP 256
>TC79280 similar to GP|21592960|gb|AAM64910.1 unknown {Arabidopsis
thaliana}, partial (46%)
Length = 809
Score = 30.8 bits (68), Expect = 0.19
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = -1
Query: 77 EDPKED--PSVPPWMSPPQYYNKDPSSKSSSYYSAEDPTSPKEYP 119
+ PKE+ P PPW+ PP+Y +K + + S P+ P
Sbjct: 431 KQPKEEWHPHEPPWIEPPRYLHKSVTE*PPQFPSVSAIQPPQSQP 297
>TC82921 weakly similar to GP|10177860|dbj|BAB11212.
gene_id:K18P6.13~pir||T04500~similar to unknown protein
{Arabidopsis thaliana}, partial (66%)
Length = 771
Score = 30.0 bits (66), Expect = 0.32
Identities = 11/28 (39%), Positives = 16/28 (56%)
Frame = +2
Query: 111 DPTSPKEYPKVESSSYAQLHNSSKYWHY 138
DP +P++Y V SS Y H YW++
Sbjct: 185 DPNNPQQYHGVYSSFYNSYHTKFTYWNF 268
>BG644710 similar to GP|3746570|gb|A putative pyruvate oxidoreductase; POR
{Brachyspira pilosicoli}, partial (5%)
Length = 661
Score = 29.6 bits (65), Expect = 0.42
Identities = 19/71 (26%), Positives = 30/71 (41%)
Frame = +2
Query: 56 HSTEGTIRVSPDRKHFALYYPEDPKEDPSVPPWMSPPQYYNKDPSSKSSSYYSAEDPTSP 115
HS+ + P+ +H PK DP+ PP+ S P+ EDP SP
Sbjct: 20 HSSPSPH*LQPNFQHLTPAQLLSPKIDPT*PPFSSAPK----------------EDPDSP 151
Query: 116 KEYPKVESSSY 126
+P+ ++ Y
Sbjct: 152 SVHPRHGANKY 184
>TC90952 similar to GP|15724316|gb|AAL06551.1 AT4g34150/F28A23_90
{Arabidopsis thaliana}, partial (49%)
Length = 1046
Score = 29.6 bits (65), Expect = 0.42
Identities = 21/62 (33%), Positives = 25/62 (39%)
Frame = +2
Query: 72 ALYYPEDPKEDPSVPPWMSPPQYYNKDPSSKSSSYYSAEDPTSPKEYPKVESSSYAQLHN 131
A+ YP+ P S P PP P S SS Y P+S YP S Y +
Sbjct: 494 AVAYPQPPPYPASHNPSSYPPSSTYPYPQSVSSPY---PPPSSSSPYPSSVPSPYPPTSS 664
Query: 132 SS 133
SS
Sbjct: 665 SS 670
>TC90839 weakly similar to PIR|F86416|F86416 probable RNA-binding protein
MEI2 36123-32976 [imported] - Arabidopsis thaliana,
partial (21%)
Length = 1178
Score = 29.6 bits (65), Expect = 0.42
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = -3
Query: 79 PKEDPSVPPWMSPPQYYNKDPSSKSSSYYSAEDPTSPKEYPKVESSS 125
P+ + S P PP NK SSKSS + P P P+ SSS
Sbjct: 207 PEAESSSPSNSMPPPLLNKSKSSKSSLALA*ALPPKPSVTPENRSSS 67
>BI308837 similar to PIR|B84585|B84 hypothetical protein At2g20110 [imported]
- Arabidopsis thaliana, partial (28%)
Length = 667
Score = 28.9 bits (63), Expect = 0.72
Identities = 13/42 (30%), Positives = 21/42 (49%)
Frame = +3
Query: 76 PEDPKEDPSVPPWMSPPQYYNKDPSSKSSSYYSAEDPTSPKE 117
PE P+ P++PP + + P SKS + +D T K+
Sbjct: 147 PEHPQPSPTLPPLPATKLGKPESPKSKSRPNFETKDATPKKQ 272
>TC76562 similar to PIR|T11622|T11622 extensin class 1 precursor - cowpea,
partial (48%)
Length = 1391
Score = 28.9 bits (63), Expect = 0.72
Identities = 18/51 (35%), Positives = 19/51 (36%), Gaps = 5/51 (9%)
Frame = +2
Query: 74 YYPEDPKEDPSVPPWMSPPQYYNKDPSSKS-----SSYYSAEDPTSPKEYP 119
YY P PS PP YY K P S YY + P SP P
Sbjct: 17 YYKSPPPPSPS-----PPPPYYYKSPPPPSPIPHTPYYYKSPPPPSPSPPP 154
Score = 28.1 bits (61), Expect = 1.2
Identities = 18/53 (33%), Positives = 20/53 (36%), Gaps = 3/53 (5%)
Frame = +2
Query: 70 HFALYYPEDPKEDPSVPPWMSPPQYYNKDPSSKS---SSYYSAEDPTSPKEYP 119
H YY P PS PP YY K P S + Y + P PK P
Sbjct: 101 HTPYYYKSPPPPSPS-----PPPPYYYKSPPPPSPIPHTPYYYKSPPPPKVLP 244
>BF635948 similar to GP|21622312|emb putative protein {Neurospora crassa},
partial (6%)
Length = 538
Score = 28.9 bits (63), Expect = 0.72
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = +1
Query: 76 PEDPKEDPS---VPPWMSPPQYYNKDPSSKSSSYYSAEDPTSPKEYPKVESSSYAQLHNS 132
P P P+ + + +PP N +P+ SS + + P+ P P SSSY HN+
Sbjct: 112 PNQPPPSPTPFDMHTFFNPPNP-NPNPNPNISSQFPSSAPSPP---PPSSSSSYPFPHNN 279
Query: 133 SKY 135
+ Y
Sbjct: 280 NNY 288
>BQ752445 similar to GP|18376387|em putative protein {Neurospora crassa},
partial (40%)
Length = 693
Score = 28.5 bits (62), Expect = 0.95
Identities = 17/43 (39%), Positives = 25/43 (57%)
Frame = +3
Query: 99 PSSKSSSYYSAEDPTSPKEYPKVESSSYAQLHNSSKYWHYSDK 141
PSSKSSS S+ +S K K S S++ H+SS+ +S +
Sbjct: 528 PSSKSSS--SSSSKSSSKPSSKSSSKSHSSSHSSSRSSRHSSR 650
>TC87085 similar to PIR|T01511|T01511 hypothetical protein T10M13.11 -
Arabidopsis thaliana, partial (12%)
Length = 639
Score = 28.1 bits (61), Expect = 1.2
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +3
Query: 96 NKDPSSKSSSYYSAEDPTSPKEYPKVESS 124
N+DPSS SSS S+ D +S +E K+ SS
Sbjct: 546 NEDPSSGSSSSSSSSDSSSSREGVKLLSS 632
>TC87084 similar to GP|2529683|gb|AAC62866.1| unknown protein {Arabidopsis
thaliana}, partial (81%)
Length = 2109
Score = 27.7 bits (60), Expect = 1.6
Identities = 20/46 (43%), Positives = 25/46 (53%), Gaps = 1/46 (2%)
Frame = +3
Query: 96 NKDPSS-KSSSYYSAEDPTSPKEYPKVESSSYAQLHNSSKYWHYSD 140
N+DPSS SSS S+ D +S KE K+ SS S K + SD
Sbjct: 429 NEDPSSGSSSSSSSSSDSSSSKEGVKLLSSDSPVRDQSFKCFSVSD 566
>TC83787 similar to GP|9757890|dbj|BAB08397.1 phosphoribosylanthranilate
transferase-like protein {Arabidopsis thaliana}, partial
(11%)
Length = 1008
Score = 27.7 bits (60), Expect = 1.6
Identities = 18/52 (34%), Positives = 24/52 (45%), Gaps = 2/52 (3%)
Frame = +2
Query: 73 LYYPED--PKEDPSVPPWMSPPQYYNKDPSSKSSSYYSAEDPTSPKEYPKVE 122
+YY ++ P P VP +PP ++ PS K E P P E KVE
Sbjct: 143 IYYVDEEIPPPPPPVPVPENPPAPSSEPPSGKVE-----ESPPPPSELEKVE 283
>TC77337 weakly similar to GP|4019275|gb|AAC95573.1| orf 48 {Ateline
herpesvirus 3}, partial (8%)
Length = 986
Score = 27.7 bits (60), Expect = 1.6
Identities = 15/37 (40%), Positives = 19/37 (50%)
Frame = -2
Query: 100 SSKSSSYYSAEDPTSPKEYPKVESSSYAQLHNSSKYW 136
SS SSS S+ P+S P SSS + +SS W
Sbjct: 733 SSSSSSLSSSSTPSSSSSSPPSSSSSSSSSSSSSSSW 623
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.307 0.127 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,232,254
Number of Sequences: 36976
Number of extensions: 82204
Number of successful extensions: 523
Number of sequences better than 10.0: 80
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of query: 141
length of database: 9,014,727
effective HSP length: 86
effective length of query: 55
effective length of database: 5,834,791
effective search space: 320913505
effective search space used: 320913505
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 53 (25.0 bits)
Lotus: description of TM0074.7