TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0074.13
         (50 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC79337 similar to GP|8809704|dbj|BAA97245.1 contains similarity...    89  5e-19
BQ146713 similar to GP|9758309|dbj| contains similarity to AAA-t...    25  4.8

>TC79337 similar to GP|8809704|dbj|BAA97245.1 contains similarity to
          unknown protein~emb|CAA22897.1~gene_id:MQM1.18
          {Arabidopsis thaliana}, partial (84%)
          Length = 785

 Score = 88.6 bits (218), Expect = 5e-19
 Identities = 42/48 (87%), Positives = 47/48 (97%)
 Frame = +2

Query: 1  MEKMSKAFEKVKIMVGMEVEDEEQQAAALDNDNSFAFMDEFNRNCTLS 48
          MEKM+KAFEKVKIMVGMEVEDEE QAAAL+N++SFAFMD+FNRNCTLS
Sbjct: 8  MEKMNKAFEKVKIMVGMEVEDEEAQAAALENESSFAFMDDFNRNCTLS 151


>BQ146713 similar to GP|9758309|dbj| contains similarity to AAA-type
           ATPase~gene_id:MUA2.5 {Arabidopsis thaliana}, partial
           (5%)
          Length = 571

 Score = 25.4 bits (54), Expect = 4.8
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +3

Query: 18  EVEDEEQQAAALDNDN 33
           +VEDEEQ+  ALD+D+
Sbjct: 165 DVEDEEQEKRALDSDS 212


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.313    0.125    0.327 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 924,836
Number of Sequences: 36976
Number of extensions: 5008
Number of successful extensions: 27
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of query: 50
length of database: 9,014,727
effective HSP length: 26
effective length of query: 24
effective length of database: 8,053,351
effective search space: 193280424
effective search space used: 193280424
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)