TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0074.12
         (369 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AW691391 similar to GP|16604643|gb unknown protein {Arabidopsis ...    32  0.30
TC83920 similar to PIR|D86429|D86429 hypothetical protein AAF197...    32  0.39
TC91650 similar to GP|8809635|dbj|BAA97186.1 gb|AAD21751.1~gene_...    31  0.66
BF648034 similar to GP|16604643|gb unknown protein {Arabidopsis ...    31  0.87
AJ501533                                                               30  1.1
TC89233 homologue to GP|18734|emb|CAA36734.1|| DNA-directed RNA ...    30  1.5
BQ135566                                                               30  1.5
TC91032 weakly similar to GP|20196995|gb|AAB91977.2 expressed pr...    29  2.5
TC80706 similar to GP|13183101|gb|AAK15052.1 mutant PhcA {Ralsto...    29  2.5
BE942012 weakly similar to GP|15408731|dbj hypothetical protein~...    28  4.3
TC82462 similar to GP|9759387|dbj|BAB10038.1 dihydropyrimidinase...    28  5.6
TC89797 GP|13775543|gb|AAK39351.1 Hypothetical protein Y73B3A.17...    28  7.3
TC91549 similar to GP|17063189|gb|AAL32989.1 unknown protein {Ar...    28  7.3
TC83199 similar to GP|20466774|gb|AAM20704.1 putative protein {A...    28  7.3
TC86327 similar to GP|14335106|gb|AAK59832.1 At2g41900/T6D20.20 ...    27  9.6
TC90796 similar to GP|3395431|gb|AAC28763.1| unknown protein {Ar...    27  9.6
TC83458 homologue to PIR|T07796|T07796 DNA-directed RNA polymera...    27  9.6
TC80881 similar to PIR|T11622|T11622 extensin class 1 precursor ...    27  9.6
BF519264 similar to GP|15293221|gb| unknown protein {Arabidopsis...    27  9.6

>AW691391 similar to GP|16604643|gb unknown protein {Arabidopsis thaliana},
           partial (30%)
          Length = 646

 Score = 32.3 bits (72), Expect = 0.30
 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
 Frame = -3

Query: 196 ESHESSTSEDSSLITTPVDSTPYATRSDAITPDVNKT-------FVLKTTDLVLRNPRQV 248
           E H S T+  SS++  PVDS   ++RS +++ D N+T           +T+ VL +P   
Sbjct: 617 EKHLSDTT--SSILENPVDSNSSSSRSGSVSRDANRTQKGLSSENTHCSTEKVLESPPSH 444

Query: 249 FGNLLEGKFVQK 260
            G++  G  V++
Sbjct: 443 VGDIGRGNSVRE 408


>TC83920 similar to PIR|D86429|D86429 hypothetical protein AAF19748.1
           [imported] - Arabidopsis thaliana, partial (13%)
          Length = 845

 Score = 32.0 bits (71), Expect = 0.39
 Identities = 11/23 (47%), Positives = 15/23 (64%)
 Frame = -3

Query: 25  PPSQPNTSPYYCHNVPSYYPQTH 47
           P + P+  PY+CH + S YPQ H
Sbjct: 111 PGNHPHHCPYFCHAMLSVYPQAH 43


>TC91650 similar to GP|8809635|dbj|BAA97186.1
           gb|AAD21751.1~gene_id:MMI9.5~similar to unknown protein
           {Arabidopsis thaliana}, partial (18%)
          Length = 754

 Score = 31.2 bits (69), Expect = 0.66
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 24  SPPSQPNTSPYYCHNVPSYYPQTHSSLQLSEFNGENPEYWLFM 66
           SPP  P + P+      + +  T  SL    FN +NP  W+F+
Sbjct: 81  SPPHSPESQPFKLSTTKTSFKTTFQSL----FNLQNPRAWIFL 197


>BF648034 similar to GP|16604643|gb unknown protein {Arabidopsis thaliana},
           partial (28%)
          Length = 652

 Score = 30.8 bits (68), Expect = 0.87
 Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
 Frame = -3

Query: 196 ESHESSTSEDSSLITTPVDSTPYATRSDAITPDVNKT-------FVLKTTDLVLRNPRQV 248
           + H S T+  SS++  PVDS   ++RS +++ D N+T           +T+ VL +P   
Sbjct: 638 KKHLSDTT--SSILENPVDSNSSSSRSGSVSRDANRTQKGLSSENTHCSTEKVLESPPSH 465

Query: 249 FGNLLEGKFVQK 260
            G++  G  V++
Sbjct: 464 VGDIGRGNSVRE 429


>AJ501533 
          Length = 671

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 15/36 (41%), Positives = 21/36 (57%), Gaps = 5/36 (13%)
 Frame = +2

Query: 25  PPSQPNTSP-YYCHNVPS----YYPQTHSSLQLSEF 55
           PP  P+ SP YY    PS    YYPQ+H +++L  +
Sbjct: 452 PPHVPSPSPMYYSGGCPSFFGPYYPQSHYNMELPRY 559


>TC89233 homologue to GP|18734|emb|CAA36734.1|| DNA-directed RNA polymerase
           {Glycine max}, partial (21%)
          Length = 648

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 18/43 (41%), Positives = 23/43 (52%), Gaps = 3/43 (6%)
 Frame = +3

Query: 23  YSP--PSQPNTSPYYCHNVPSYYPQTHSSLQLSEFN-GENPEY 62
           YSP  PS   TSP Y    PSY P + +    S +N G +P+Y
Sbjct: 75  YSPTSPSYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGTSPDY 203


>BQ135566 
          Length = 930

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 15/35 (42%), Positives = 21/35 (59%), Gaps = 3/35 (8%)
 Frame = +2

Query: 18  PRSIF---YSPPSQPNTSPYYCHNVPSYYPQTHSS 49
           P S+F   Y  P QP+  PY+   +P Y+P +HSS
Sbjct: 395 PHSLFPFCYPSPFQPHLLPYH---IPFYHPLSHSS 490


>TC91032 weakly similar to GP|20196995|gb|AAB91977.2 expressed protein
           {Arabidopsis thaliana}, partial (37%)
          Length = 1366

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
 Frame = -2

Query: 22  FYSPPSQPNTSPY-----YCHNVPSYYPQTHSSLQ 51
           F +PPS P+T P      +   +PS+ P +HS+LQ
Sbjct: 516 FSTPPSTPSTLPQQPSTSHSSTLPSHSPTSHSTLQ 412


>TC80706 similar to GP|13183101|gb|AAK15052.1 mutant PhcA {Ralstonia
           solanacearum}, partial (8%)
          Length = 729

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = -1

Query: 29  PNTSPYYCHNVPSYYPQTHSSLQLSEFNGENPEYWLFMADCYFLQNPY 76
           P TSPY+     S+Y Q H S +L  F    P +       +  Q+PY
Sbjct: 555 PGTSPYH*ARCQSFYHQQHDS-ELLHFQLAGPRHGFLSHQSF*HQHPY 415


>BE942012 weakly similar to GP|15408731|dbj hypothetical protein~similar to
           receptor serine/threonine kinase PR5K, partial (7%)
          Length = 561

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
 Frame = +3

Query: 134 GFEKSSLVEIQRSSEQVSPHRVVFSETTLEDGAQLPFE---ASSDVHLLPEVVSRVELGS 190
           G +  ++VE  RSSE   PH V++ +  LE G  L  +    S++ + + + ++ V L  
Sbjct: 27  GRKNVNIVEASRSSELYFPHLVIYKK--LEKGNDLELDDGVMSNEENEIAKKLTMVGLWC 200

Query: 191 AETEIESHESSTSEDSSLITTPVDS 215
            +T I +H  + S+   ++   +DS
Sbjct: 201 IQT-IPTHRPTISKVIDMLDGSMDS 272


>TC82462 similar to GP|9759387|dbj|BAB10038.1 dihydropyrimidinase
           {Arabidopsis thaliana}, partial (28%)
          Length = 693

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -2

Query: 257 FVQKNNEAQFEKHFDKLLMQFHNSSTTVDVQKIG 290
           ++  NN+A F+ +   LL+   ++STT D Q +G
Sbjct: 308 WINSNNDAVFDINISNLLVMSIDNSTTFDQQLVG 207


>TC89797 GP|13775543|gb|AAK39351.1 Hypothetical protein Y73B3A.17
           {Caenorhabditis elegans}, partial (1%)
          Length = 958

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +3

Query: 21  IFYSPPSQPNTSPYYCHNVPSYYPQTHSSLQLSEFNGENP 60
           I+Y PPS P  SP      P ++  +H+S  L   +   P
Sbjct: 207 IYYFPPSFPFPSPEQPQ*FPPFHESSHASQPLHSASSSKP 326


>TC91549 similar to GP|17063189|gb|AAL32989.1 unknown protein {Arabidopsis
            thaliana}, partial (31%)
          Length = 1499

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 20/42 (47%), Positives = 24/42 (56%), Gaps = 3/42 (7%)
 Frame = +3

Query: 177  HLLPEVVSRVE-LGSAET--EIESHESSTSEDSSLITTPVDS 215
            HL  EV  R++ L   ET  +I S  +  SEDSS  TTP DS
Sbjct: 1050 HLCDEVDRRIKPLLKLETVLDISSSSAPVSEDSSSHTTPPDS 1175


>TC83199 similar to GP|20466774|gb|AAM20704.1 putative protein {Arabidopsis
           thaliana}, partial (18%)
          Length = 748

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 14/43 (32%), Positives = 25/43 (57%), Gaps = 1/43 (2%)
 Frame = -1

Query: 13  SAQRDPRSIFYSPPSQPNTSPYYCH-NVPSYYPQTHSSLQLSE 54
           S +R P ++  S P+   T+   CH N+P  +P+TH   Q+++
Sbjct: 370 SRRRRP-NLRISTPNHGTTTTRVCHQNLPLKFPKTHKKTQMTQ 245


>TC86327 similar to GP|14335106|gb|AAK59832.1 At2g41900/T6D20.20 {Arabidopsis
            thaliana}, partial (50%)
          Length = 3018

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +1

Query: 65   FMADCYFLQNPYPWETRFQLLAIHLGGKALTWFRLSHQQIHSWEEFKVAFRLYF 118
            F    YF+    P+ T +++L++HL      W  +S++ I  +E   +  +LYF
Sbjct: 2746 FFLSFYFISF*VPFPTLYKILSVHLCCLCRKWD*VSYEGI--YELLNIYCKLYF 2901


>TC90796 similar to GP|3395431|gb|AAC28763.1| unknown protein {Arabidopsis
           thaliana}, partial (20%)
          Length = 965

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 20  SIFYSPPSQPNTSPYYCHNVPSYYPQTHSSLQLSE 54
           S  Y+P + P  SPY  +  P   PQ+ S  Q  +
Sbjct: 773 SYSYAPQAYPGNSPYNSYVAPWAQPQSKSEFQTQQ 877


>TC83458 homologue to PIR|T07796|T07796 DNA-directed RNA polymerase (EC
            2.7.7.6) largest chain - soybean (fragment), partial
            (63%)
          Length = 1220

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = +2

Query: 18   PRSIFYSP--PSQPNTSPYYCHNVPSYYPQTHS 48
            P S  YSP  PS   TSP Y    PSY P + S
Sbjct: 1004 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSSS 1102


>TC80881 similar to PIR|T11622|T11622 extensin class 1 precursor - cowpea,
           partial (34%)
          Length = 597

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 14/36 (38%), Positives = 17/36 (46%), Gaps = 8/36 (22%)
 Frame = +2

Query: 25  PPSQPNTSPYYCHNVPSYY--------PQTHSSLQL 52
           PP  P+  P Y H  P YY        P T SS++L
Sbjct: 245 PPPSPSPPPPYVHKYPPYYYKSPPPPSPFTTSSIRL 352


>BF519264 similar to GP|15293221|gb| unknown protein {Arabidopsis thaliana},
           partial (7%)
          Length = 416

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 15/32 (46%), Positives = 17/32 (52%)
 Frame = -3

Query: 18  PRSIFYSPPSQPNTSPYYCHNVPSYYPQTHSS 49
           P  IFYSP S          N PS +PQTH+S
Sbjct: 123 PFEIFYSPNSS---------NDPSEFPQTHTS 55


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.318    0.134    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,372,509
Number of Sequences: 36976
Number of extensions: 196860
Number of successful extensions: 1117
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 1097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of query: 369
length of database: 9,014,727
effective HSP length: 98
effective length of query: 271
effective length of database: 5,391,079
effective search space: 1460982409
effective search space used: 1460982409
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)