BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0072a.9
(239 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC90485 similar to GP|21112879|gb|AAM41073.1 Prop transport prot... 29 1.4
TC79269 similar to PIR|F84767|F84767 hypothetical protein At2g35... 28 3.1
TC86518 homologue to PIR|T09640|T09640 protein phosphatase 2C - ... 28 3.1
TC78448 similar to SP|Q42546|DPNP_ARATH 3'(2') 5'-bisphosphate n... 28 4.1
TC92479 similar to GP|9759160|dbj|BAB09716.1 contains similarity... 27 5.3
TC92168 similar to PIR|T08399|T08399 hypothetical protein F18B3.... 27 7.0
TC86943 similar to EGAD|51252|YCRX05W hypothetical protein {Sacc... 27 7.0
TC90327 similar to GP|19310601|gb|AAL85031.1 unknown protein {Ar... 27 9.1
TC86517 homologue to PIR|T09640|T09640 protein phosphatase 2C - ... 27 9.1
>TC90485 similar to GP|21112879|gb|AAM41073.1 Prop transport protein
{Xanthomonas campestris pv. campestris str. ATCC 33913},
partial (6%)
Length = 561
Score = 29.3 bits (64), Expect = 1.4
Identities = 26/79 (32%), Positives = 38/79 (47%), Gaps = 6/79 (7%)
Frame = -2
Query: 102 GYSLYLRVIR---ASTGDMIDRMVRIDLLIVGHSEGK-SRPAGLGLIRLCQGFDP--CTC 155
G SL+L ++ ST + D + DLL+VG + K S P LG RL +P T
Sbjct: 290 GVSLFLSLLLNLPPSTFILCDPFLACDLLVVGLARSKSSHPPKLGASRLPLSTEPLFSTT 111
Query: 156 YLCLGGYVCLFCQMSSMDS 174
+ C+ ++ L SS S
Sbjct: 110 HDCIPAFLVLVFWFSSGSS 54
>TC79269 similar to PIR|F84767|F84767 hypothetical protein At2g35360
[imported] - Arabidopsis thaliana, partial (53%)
Length = 967
Score = 28.1 bits (61), Expect = 3.1
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +3
Query: 27 CSLVFALF-IDGISDCVTYLQEINLLDGFLLEGTPLSVAYVKFPCMGSFEEFQG 79
C L + L IDGISD YLQ + +LE L M + E FQG
Sbjct: 483 CGLSWPLLPIDGISDLCIYLQLAFVSFSSILESAKLVTPVHTLSSMKTSESFQG 644
>TC86518 homologue to PIR|T09640|T09640 protein phosphatase 2C - alfalfa,
partial (50%)
Length = 831
Score = 28.1 bits (61), Expect = 3.1
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = +1
Query: 3 GDRHYRQWLLKEGREGLGKEKDDHCSLVFALFIDGISDCVTYLQEINLLDGF 54
GDRH +QW+ E + + + +H L+ A DG+ D V+ + +++ F
Sbjct: 313 GDRHLKQWVTAEPETKVIRIEPEHDLLILA--SDGLWDKVSNQEAVDIARQF 462
>TC78448 similar to SP|Q42546|DPNP_ARATH 3'(2') 5'-bisphosphate nucleotidase
(EC 3.1.3.7) (3'(2') 5- bisphosphonucleoside 3'(2'),
partial (84%)
Length = 1545
Score = 27.7 bits (60), Expect = 4.1
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +3
Query: 171 SMDSFVILRRSGKTRSEMTTTEPSTWTRTS-YMTRWGDCVSMELEDEMMTSYE 222
S+++ +I+R+ T S + + +T +S Y RW ++ +M+SYE
Sbjct: 63 SINTIIIIRKKSTTVSGFSLSSSTTRRSSSLYCRRWSPLTTILSSSSLMSSYE 221
>TC92479 similar to GP|9759160|dbj|BAB09716.1 contains similarity to myosin
heavy chain~gene_id:MEE6.21 {Arabidopsis thaliana},
partial (4%)
Length = 844
Score = 27.3 bits (59), Expect = 5.3
Identities = 14/29 (48%), Positives = 18/29 (61%)
Frame = +1
Query: 66 VKFPCMGSFEEFQGEEGIECEGTFEENAG 94
VK C+G+F F EEG +GT E+N G
Sbjct: 229 VKGNCLGNFNNFIYEEG---KGTSEQNCG 306
>TC92168 similar to PIR|T08399|T08399 hypothetical protein F18B3.60 -
Arabidopsis thaliana, partial (6%)
Length = 537
Score = 26.9 bits (58), Expect = 7.0
Identities = 16/52 (30%), Positives = 24/52 (45%), Gaps = 11/52 (21%)
Frame = +2
Query: 159 LGGYVCLF----------CQMSSMD-SFVILRRSGKTRSEMTTTEPSTWTRT 199
L GYVC F C S ++ ++S K ++ M T+PS+W T
Sbjct: 179 LFGYVCFFNKCGTNQD*ECSNSCYS*KILVFQKSHKPQNPMNKTKPSSWNVT 334
>TC86943 similar to EGAD|51252|YCRX05W hypothetical protein {Saccharomyces
cerevisiae}, partial (13%)
Length = 767
Score = 26.9 bits (58), Expect = 7.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 153 CTCYLCLGGYVCLFCQMSSMDSFVIL 178
C CY L GY+CL + + +FV L
Sbjct: 616 CICYKELNGYICLVINLL*VFAFVFL 693
>TC90327 similar to GP|19310601|gb|AAL85031.1 unknown protein {Arabidopsis
thaliana}, partial (22%)
Length = 798
Score = 26.6 bits (57), Expect = 9.1
Identities = 23/73 (31%), Positives = 33/73 (44%), Gaps = 1/73 (1%)
Frame = +3
Query: 79 GEEGIECEGTFEENAGITIVYAFGYSLYLRV-IRASTGDMIDRMVRIDLLIVGHSEGKSR 137
G++ C G F + IV FG S R + G M+++ DLL+ GH G
Sbjct: 3 GKKNFTCRGLFWV---LRIVSRFGLSKGRRTELEKLIGGMLEQATLDDLLVSGHDMGIYY 173
Query: 138 PAGLGLIRLCQGF 150
L +IRL + F
Sbjct: 174 DVNL-VIRLVRQF 209
>TC86517 homologue to PIR|T09640|T09640 protein phosphatase 2C - alfalfa,
complete
Length = 1616
Score = 26.6 bits (57), Expect = 9.1
Identities = 16/49 (32%), Positives = 25/49 (50%)
Frame = +2
Query: 3 GDRHYRQWLLKEGREGLGKEKDDHCSLVFALFIDGISDCVTYLQEINLL 51
GDRH +QW+ E + + + +H L+ A DG+ D V I +L
Sbjct: 995 GDRHLKQWVTAEPETKVIRIEPEHDLLILA--SDGLWDKVILQNFIAML 1135
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.323 0.141 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,165,512
Number of Sequences: 36976
Number of extensions: 117038
Number of successful extensions: 655
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of query: 239
length of database: 9,014,727
effective HSP length: 93
effective length of query: 146
effective length of database: 5,575,959
effective search space: 814090014
effective search space used: 814090014
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)
Lotus: description of TM0072a.9