BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0066.12
(163 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF631908 weakly similar to GP|21450441|gb| putative transposon p... 32 0.15
TC77564 similar to GP|20466754|gb|AAM20694.1 Isp4-like protein {... 31 0.19
BQ751327 weakly similar to SP|P43076|PHR1 PH responsive protein ... 30 0.56
TC81944 weakly similar to PIR|T10059|T10059 cytokinin-induced pr... 29 0.73
TC81187 similar to PIR|T47613|T47613 ABC transporter-like protei... 29 0.96
TC86241 similar to GP|13877531|gb|AAK43843.1 Unknown protein {Ar... 28 1.2
TC86243 similar to GP|13877531|gb|AAK43843.1 Unknown protein {Ar... 28 1.2
TC90359 weakly similar to PIR|T09019|T09019 phosphoprotein phosp... 28 1.6
TC86898 similar to GP|18376007|emb|CAB91741. probable ATP citrat... 28 1.6
TC93414 homologue to GP|17907114|emb|CAD13249. tyrosine kinase {... 28 1.6
TC77337 weakly similar to GP|4019275|gb|AAC95573.1| orf 48 {Atel... 23 2.0
BQ751519 similar to GP|940860|emb|C MYO2 {Saccharomyces cerevisi... 28 2.1
TC91286 weakly similar to PIR|E84578|E84578 probable senescence-... 28 2.1
TC89755 similar to GP|10177798|dbj|BAB11289. emb|CAB87778.1~gene... 28 2.1
TC89702 similar to PIR|T01157|T01157 hypothetical protein F7N22.... 28 2.1
TC92293 similar to SP|Q64733|FXB2_MOUSE Forkhead box protein B2 ... 27 2.8
BQ751226 similar to GP|18376350|em probable aldehyde dehydrogena... 27 2.8
BE998749 similar to PIR|T04703|T047 hypothetical protein F4B14.2... 27 2.8
TC78463 similar to GP|4406756|gb|AAD20067.1| expressed protein {... 27 3.6
TC78095 weakly similar to PIR|G84776|G84776 hypothetical protein... 27 3.6
>BF631908 weakly similar to GP|21450441|gb| putative transposon protein
5'-partial {Oryza sativa (japonica cultivar-group)},
partial (17%)
Length = 681
Score = 31.6 bits (70), Expect = 0.15
Identities = 32/111 (28%), Positives = 48/111 (42%), Gaps = 12/111 (10%)
Frame = +2
Query: 54 LFMMAPNSWDPLSNTLTRPLRLHD---------QDTDPSSSSPSFIVTVSQRSESIAVRV 104
LF +A +++D + +L P D + T P++ +PSFI+ R R
Sbjct: 47 LFSLAKHTFDHRAESLFPPSHTFDHRHAHTIDHRQTSPTNFTPSFILLTLHRHAFSCRRA 226
Query: 105 HHGT--HLLSPHEV-RALMVPTSLTASLNSWVFIGKLISVVLFRFRLRCRE 152
HGT H + H RA T+S N + LIS +LF L R+
Sbjct: 227 SHGTESHRRASHFTNRASQSRIH*TSSSN--FTVADLISQILFPLSLTQRQ 373
>TC77564 similar to GP|20466754|gb|AAM20694.1 Isp4-like protein {Arabidopsis
thaliana}, partial (37%)
Length = 1275
Score = 31.2 bits (69), Expect = 0.19
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +1
Query: 120 MVPTSLTASLNSWVFIGKLISVVLFRFR 147
M+P + + NSW+F+G + + +FR+R
Sbjct: 556 MMPPATPLNYNSWIFVGTIFNFFVFRYR 639
>BQ751327 weakly similar to SP|P43076|PHR1 PH responsive protein 1 precursor
(PH-regulated protein 1). [Yeast] {Candida albicans},
partial (24%)
Length = 574
Score = 29.6 bits (65), Expect = 0.56
Identities = 14/36 (38%), Positives = 17/36 (46%)
Frame = +3
Query: 8 PPCNPNCSKPESSPSSTWFDMELPLPTTTSSETEPF 43
PP + + P S+ S TW P TT S T PF
Sbjct: 330 PPA*SSSATPASTSSPTWVSPRPPSTVTTPSGTRPF 437
>TC81944 weakly similar to PIR|T10059|T10059 cytokinin-induced protein PCKR3
- Madagascar periwinkle (fragment), partial (23%)
Length = 1125
Score = 29.3 bits (64), Expect = 0.73
Identities = 11/16 (68%), Positives = 12/16 (74%)
Frame = +1
Query: 6 KPPPCNPNCSKPESSP 21
KPPP NP KP+SSP
Sbjct: 682 KPPPLNPQVVKPQSSP 729
>TC81187 similar to PIR|T47613|T47613 ABC transporter-like protein -
Arabidopsis thaliana, partial (41%)
Length = 1242
Score = 28.9 bits (63), Expect = 0.96
Identities = 11/40 (27%), Positives = 24/40 (59%)
Frame = +1
Query: 2 EELEKPPPCNPNCSKPESSPSSTWFDMELPLPTTTSSETE 41
E+ +KP + N +KP+ +P ++ + ++ LP + E+E
Sbjct: 163 EKADKPKKASSNKAKPKPAPKASAYTDDIDLPPSDDDESE 282
>TC86241 similar to GP|13877531|gb|AAK43843.1 Unknown protein {Arabidopsis
thaliana}, partial (41%)
Length = 736
Score = 28.5 bits (62), Expect = 1.2
Identities = 15/45 (33%), Positives = 27/45 (59%)
Frame = -1
Query: 119 LMVPTSLTASLNSWVFIGKLISVVLFRFRLRCRECCDFPKRKRKL 163
+++ T +LN +F G + SV ++ RCR CC++ +R+R L
Sbjct: 667 IVIQQHCTQALNH-LFAGNIGSVKNWKL-FRCRRCCNYRRRRRWL 539
>TC86243 similar to GP|13877531|gb|AAK43843.1 Unknown protein {Arabidopsis
thaliana}, partial (41%)
Length = 841
Score = 28.5 bits (62), Expect = 1.2
Identities = 15/45 (33%), Positives = 27/45 (59%)
Frame = -3
Query: 119 LMVPTSLTASLNSWVFIGKLISVVLFRFRLRCRECCDFPKRKRKL 163
+++ T +LN +F G + SV ++ RCR CC++ +R+R L
Sbjct: 629 IVIQQHCTQALNH-LFAGNIGSVKNWKL-FRCRRCCNYRRRRRWL 501
>TC90359 weakly similar to PIR|T09019|T09019 phosphoprotein phosphatase
homolog T27E11.40 - Arabidopsis thaliana, partial (32%)
Length = 687
Score = 28.1 bits (61), Expect = 1.6
Identities = 11/38 (28%), Positives = 21/38 (54%)
Frame = -1
Query: 8 PPCNPNCSKPESSPSSTWFDMELPLPTTTSSETEPFRL 45
PPC + SS W + + P P+ T+++ +P+R+
Sbjct: 432 PPCRASRHSLYSSSLRNWTEAKPPWPSNTAAKEKPWRV 319
>TC86898 similar to GP|18376007|emb|CAB91741. probable ATP citrate lyase
subunit 2 {Neurospora crassa}, complete
Length = 2389
Score = 28.1 bits (61), Expect = 1.6
Identities = 34/125 (27%), Positives = 45/125 (35%), Gaps = 16/125 (12%)
Frame = +2
Query: 7 PPPCNPNCSKPES-----------SPSSTWFDMELPLPTTTSSETEPFRLDQAVCSHGLF 55
PPP C+ P SPS +F P+P SS P AV +
Sbjct: 689 PPPDCALCTSPRMPTLRTS*TRPRSPSPGFFS---PVP---SSSRSPIN*SSAVARAVFW 850
Query: 56 MMAPNSWDPLSNTLTRPLRLHDQDT-----DPSSSSPSFIVTVSQRSESIAVRVHHGTHL 110
+ P L+ P+R T SSSSPSF + + S + V G +
Sbjct: 851 PLTRPGPRPRHGLLSVPVRSRRLSTLLVSCASSSSSPSFPTPKTPSTTSTSCPVRDGDWI 1030
Query: 111 LSPHE 115
L HE
Sbjct: 1031LFTHE 1045
>TC93414 homologue to GP|17907114|emb|CAD13249. tyrosine kinase {Schistosoma
mansoni}, partial (1%)
Length = 578
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/75 (24%), Positives = 30/75 (40%)
Frame = +1
Query: 18 ESSPSSTWFDMELPLPTTTSSETEPFRLDQAVCSHGLFMMAPNSWDPLSNTLTRPLRLHD 77
E+ P +LP PTTT+S+ P + P S+T++ P L
Sbjct: 163 EAPPQHHHQHHQLPPPTTTTSQLPPLLMH----------------SPASSTVSHPTSLFP 294
Query: 78 QDTDPSSSSPSFIVT 92
DP + P +++
Sbjct: 295 PSADPLQTPPLLLLS 339
>TC77337 weakly similar to GP|4019275|gb|AAC95573.1| orf 48 {Ateline
herpesvirus 3}, partial (8%)
Length = 986
Score = 23.1 bits (48), Expect(2) = 2.0
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -3
Query: 102 VRVHHGTHLLSPHEVRAL 119
+R+HH HLL H V L
Sbjct: 447 LRLHHRCHLLLQHHVACL 394
Score = 23.1 bits (48), Expect(2) = 2.0
Identities = 21/81 (25%), Positives = 31/81 (37%)
Frame = -2
Query: 8 PPCNPNCSKPESSPSSTWFDMELPLPTTTSSETEPFRLDQAVCSHGLFMMAPNSWDPLSN 67
PP + + S SS SS+W ++SS + PF G F + L
Sbjct: 676 PPSSSSSSSSSSSSSSSWSS------PSSSSSSSPFSSAPPAPPSGAFFELLLLLELLPY 515
Query: 68 TLTRPLRLHDQDTDPSSSSPS 88
P D + PS ++PS
Sbjct: 514 P---PPSSDDNSSSPSPNAPS 461
>BQ751519 similar to GP|940860|emb|C MYO2 {Saccharomyces cerevisiae}, partial
(7%)
Length = 794
Score = 27.7 bits (60), Expect = 2.1
Identities = 14/48 (29%), Positives = 24/48 (49%)
Frame = +2
Query: 17 PESSPSSTWFDMELPLPTTTSSETEPFRLDQAVCSHGLFMMAPNSWDP 64
P +S T F LPL TT S T+P ++ ++ + + + +W P
Sbjct: 314 PSASSGITSFSCSLPL*TTHSRPTQPIAINPSMSQN--YDVGTRAWQP 451
>TC91286 weakly similar to PIR|E84578|E84578 probable senescence-associated
protein 5 [imported] - Arabidopsis thaliana, partial
(71%)
Length = 759
Score = 27.7 bits (60), Expect = 2.1
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -3
Query: 89 FIVTVSQRSESIAVRVHHGTHLLSPHEVRALMVPTSLTASLNSWVF 134
F++ V Q +A + HG H + PH T +T S NSW F
Sbjct: 715 FLIIVPQ----VASGISHGIHRVCPH------YGTHITVSTNSWRF 608
>TC89755 similar to GP|10177798|dbj|BAB11289.
emb|CAB87778.1~gene_id:MXA21.9~strong similarity to
unknown protein {Arabidopsis thaliana}, partial (59%)
Length = 864
Score = 27.7 bits (60), Expect = 2.1
Identities = 17/64 (26%), Positives = 33/64 (51%)
Frame = -2
Query: 45 LDQAVCSHGLFMMAPNSWDPLSNTLTRPLRLHDQDTDPSSSSPSFIVTVSQRSESIAVRV 104
L +CS + + SW P ++TR + H+ +++ + ++Q S SI++R+
Sbjct: 629 LQAFICSFNICVCIIFSWLPCRLSITRVIITHNINSESITQFNKQFKHLTQIS-SISMRI 453
Query: 105 HHGT 108
HGT
Sbjct: 452 KHGT 441
>TC89702 similar to PIR|T01157|T01157 hypothetical protein F7N22.3 -
Arabidopsis thaliana, partial (67%)
Length = 988
Score = 27.7 bits (60), Expect = 2.1
Identities = 32/150 (21%), Positives = 55/150 (36%), Gaps = 7/150 (4%)
Frame = +1
Query: 7 PPPCNPNCSKPESSPSSTWFDMELP------LPTTTSSETEPFRLDQAVCSHGLFMMAP- 59
PPP + + P S +S+W P P+ T S +V S +
Sbjct: 124 PPPPHHSYQTPPSPTASSWTSASAPTITSQIAPSATPSPPYAPNPPYSVASFSASTVTSF 303
Query: 60 NSWDPLSNTLTRPLRLHDQDTDPSSSSPSFIVTVSQRSESIAVRVHHGTHLLSPHEVRAL 119
++ +SN PL +H T S + + V+ + ++ L++ H +
Sbjct: 304 HAQSQISNHFVFPLLIHLPPTRTHSFTRLYKVSTFLLDVRVVLKKARSALLVTSHAMLKR 483
Query: 120 MVPTSLTASLNSWVFIGKLISVVLFRFRLR 149
+ P L ++ VLFRFR R
Sbjct: 484 LTPRRLR---------*HILVPVLFRFRYR 546
>TC92293 similar to SP|Q64733|FXB2_MOUSE Forkhead box protein B2
(Transcription factor FKH-4). [Mouse] {Mus musculus},
partial (4%)
Length = 626
Score = 27.3 bits (59), Expect = 2.8
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 7 PPPCNPNCSKPESSPSSTWFDMELPLPTTTSSET 40
PPP +P S P S PS+ + LP P TT + +
Sbjct: 466 PPPSSPTESIP-SPPSAVPLPLSLPAPPTTPTSS 564
>BQ751226 similar to GP|18376350|em probable aldehyde dehydrogenase
{Neurospora crassa}, partial (39%)
Length = 807
Score = 27.3 bits (59), Expect = 2.8
Identities = 38/143 (26%), Positives = 58/143 (39%), Gaps = 15/143 (10%)
Frame = +2
Query: 1 MEELEKPPPCNPNCSKPESSPSSTWFDMELPLPTTT-SSETEPFRLDQAVCSHGLFMM-- 57
M PPP P+ + P ++ P+ SS T P R CS L +
Sbjct: 266 MSTSPSPPPARPSRASGTRPPLTS-------APSCC*SSPTSPRRT--LTCSPPLSLSTT 418
Query: 58 -APNSWDPLSN---------TLTRPLRLHDQDTDPSSSSPSFIVTVSQRSESIAVRVHHG 107
+P+ W +++ T+ P RL + PS S+P T + AVR HG
Sbjct: 419 ESPSPWPRVTSVPSSVA*DTTVAGPTRLPAR---PSMSTPRCSTTPALSLLVFAVRSSHG 589
Query: 108 THLLSPHEVRALM--VPTSLTAS 128
T L S R+ + P +L++S
Sbjct: 590 TSLFSCWRGRSALPWPPVTLSSS 658
>BE998749 similar to PIR|T04703|T047 hypothetical protein F4B14.200 -
Arabidopsis thaliana, partial (30%)
Length = 818
Score = 27.3 bits (59), Expect = 2.8
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = -2
Query: 21 PSSTWFDME--LPLPTTTSSETEPFRLDQAVCSHGLFMMAPNSWDPLSNTLTRPLRLHDQ 78
P + W + + +P+ T SS + F+L+ +V PNS S + LHD
Sbjct: 445 PINQWEETQASIPIDTHQSSGSSAFQLNYSV*--------PNSPAKASADFYQTPYLHDP 290
Query: 79 DTDPSSSSPSF 89
+ P+S +P F
Sbjct: 289 HSSPNSKAPPF 257
>TC78463 similar to GP|4406756|gb|AAD20067.1| expressed protein {Arabidopsis
thaliana}, partial (93%)
Length = 1544
Score = 26.9 bits (58), Expect = 3.6
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 119 LMVPTSLTASLNSWVFIGKLISVV 142
L +PTS+T SL SW+ + L+ +V
Sbjct: 229 LNIPTSITQSLISWLLLSLLLHLV 300
>TC78095 weakly similar to PIR|G84776|G84776 hypothetical protein At2g36090
[imported] - Arabidopsis thaliana, partial (19%)
Length = 1467
Score = 26.9 bits (58), Expect = 3.6
Identities = 26/92 (28%), Positives = 35/92 (37%), Gaps = 5/92 (5%)
Frame = +3
Query: 4 LEKPPPCNPNCSKPESSPSSTWF---DMELPLPTTTSSETEPFRLDQAVCSHGLFMMA-- 58
+ + PP P S P SSP T P PT T+S ++ HG +
Sbjct: 252 IHQSPPSTPTYSNPTSSPDLTAHHSPPSPPPPPTFTTSAQNTTYGKKSSPPHGHLSITPP 431
Query: 59 PNSWDPLSNTLTRPLRLHDQDTDPSSSSPSFI 90
P P S+ L P + P+ S PS I
Sbjct: 432 PRHSSPPSHPLIAP-------SSPTPSRPSII 506
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.319 0.132 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,867,752
Number of Sequences: 36976
Number of extensions: 104812
Number of successful extensions: 799
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of query: 163
length of database: 9,014,727
effective HSP length: 89
effective length of query: 74
effective length of database: 5,723,863
effective search space: 423565862
effective search space used: 423565862
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)
Lotus: description of TM0066.12