TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0066.1
         (332 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC87710 similar to PIR|T08953|T08953 Cdk-activating protein kina...    30  0.99
TC79940 similar to GP|20466568|gb|AAM20601.1 unknown protein {Ar...    30  1.7
TC80589 similar to PIR|B86468|B86468 probable DNA polymerase typ...    29  2.9
TC79105 similar to GP|20258935|gb|AAM14183.1 unknown protein {Ar...    28  6.4

>TC87710 similar to PIR|T08953|T08953 Cdk-activating protein kinase (EC
           2.7.1.-) 1 [validated] - Arabidopsis thaliana, partial
           (64%)
          Length = 1738

 Score = 30.4 bits (67), Expect = 0.99
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 9/86 (10%)
 Frame = +1

Query: 110 KFMNRRNYEDLNLFVII-LNQEIRKLSTQVIRVKWSLHAREEIV--FELLQHLKG----- 161
           KF   +N+     FVII   Q +RKL+       WS+H R EI   + +  H+       
Sbjct: 31  KFSKTQNFFFYFHFVIINFFQYLRKLNMDPPTKSWSIHTRPEITTKYSIFTHIGSGTYSD 210

Query: 162 -IGARSLLEGIRKSTREMIEEQEAVR 186
               R L +G   + +E+ + Q A R
Sbjct: 211 VYSGRRLSDGTPVALKEIHDHQSASR 288


>TC79940 similar to GP|20466568|gb|AAM20601.1 unknown protein {Arabidopsis
           thaliana}, partial (64%)
          Length = 1149

 Score = 29.6 bits (65), Expect = 1.7
 Identities = 21/84 (25%), Positives = 34/84 (40%)
 Frame = +1

Query: 129 QEIRKLSTQVIRVKWSLHAREEIVFELLQHLKGIGARSLLEGIRKSTREMIEEQEAVRGR 188
           QE+  LST V+ +KW++  + + +      L G+G   +L    K T   I  Q      
Sbjct: 475 QEMTMLSTSVLSIKWTIRGKPKSI------LAGVGGGLILRVTSKFTLNQISGQVIKHEE 636

Query: 189 LFTIQDVTQSTVRAWLQDRSLRVT 212
           L+ +     S    +   R L  T
Sbjct: 637 LWDLSSSPASAQAFFWSSRVLFAT 708


>TC80589 similar to PIR|B86468|B86468 probable DNA polymerase type I
           54894-56354 [imported] - Arabidopsis thaliana, partial
           (67%)
          Length = 1416

 Score = 28.9 bits (63), Expect = 2.9
 Identities = 26/133 (19%), Positives = 58/133 (43%)
 Frame = +1

Query: 123 FVIILNQEIRKLSTQVIRVKWSLHAREEIVFELLQHLKGIGARSLLEGIRKSTREMIEEQ 182
           F  +++  ++K +  VI+V    H  +++V  L + +   G R ++    K  +++I + 
Sbjct: 241 FYGVISDVLQKCNVPVIKVDG--HEADDVVATLAEQVLKKGFRVVIASPDKDFKQLISDN 414

Query: 183 EAVRGRLFTIQDVTQSTVRAWLQDRSLRVTHNLAVFAGVGMVLTIITGLFGINVDGIPGA 242
             +      +Q  +  T + +    +     +L++             + G  VDG+PG 
Sbjct: 415 VQIVMPKPELQRWSFYTAKHYRDQYNCDPQSDLSLRC-----------IIGDEVDGVPGI 561

Query: 243 EHTPYAFGLFTAI 255
           +H   +FG  TA+
Sbjct: 562 QHLVPSFGWKTAL 600


>TC79105 similar to GP|20258935|gb|AAM14183.1 unknown protein {Arabidopsis
           thaliana}, partial (18%)
          Length = 861

 Score = 27.7 bits (60), Expect = 6.4
 Identities = 9/22 (40%), Positives = 16/22 (71%)
 Frame = +2

Query: 244 HTPYAFGLFTAILVFIGAVLVV 265
           H PY+F +F   ++F G+VL++
Sbjct: 71  HPPYSFSIFINSIIFYGSVLIL 136


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.324    0.141    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,731,481
Number of Sequences: 36976
Number of extensions: 102142
Number of successful extensions: 456
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of query: 332
length of database: 9,014,727
effective HSP length: 97
effective length of query: 235
effective length of database: 5,428,055
effective search space: 1275592925
effective search space used: 1275592925
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)