TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0065.20
         (196 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative ret...    74  5e-14
BG587170 similar to PIR|F86470|F8 probable retroelement polyprot...    67  3e-12
AW773859                                                               44  5e-05
BQ122739                                                               34  0.042
TC88498 similar to GP|21304712|gb|AAM45475.1 ethylene-responsive...    33  0.071
TC89711 weakly similar to PIR|T10725|T10725 protein kinase Xa21 ...    29  1.0
TC77374 weakly similar to GP|14517446|gb|AAK62613.1 AT5g14030/MU...    29  1.3
TC93538 similar to SP|Q12644|NUIM_NEUCR NADH-ubiquinone oxidored...    28  2.3
TC84967 similar to PIR|G86453|G86453 YUP8H12R.39. homolog F9L11....    28  3.0
TC84764 similar to PIR|S71584|S71584 GTP-binding protein BG1 - A...    27  5.1

>TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative retroelement
           {Oryza sativa} [Oryza sativa (japonica cultivar-group)],
           partial (10%)
          Length = 823

 Score = 73.6 bits (179), Expect = 5e-14
 Identities = 38/79 (48%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
 Frame = +1

Query: 110 LGVCEHCIL-GKQRKVSFSKAGRKSKLEKLKLVHTDVWGPAPVKSLGGSRYYVTFIDDST 168
           L  C+H +  G ++KVSFS A  ++K   L  +H+D+WGP+ V S GG RY +T IDD  
Sbjct: 13  LEFCKHLLFFGNRKKVSFSTATHRTK-GILDYIHSDLWGPSKVTSYGGRRYMMTIIDDFP 189

Query: 169 RKV*VYFLKNKSDVFSVFK 187
           RKV VYFL+ K++ F  FK
Sbjct: 190 RKVWVYFLRYKNETFPTFK 246


>BG587170 similar to PIR|F86470|F8 probable retroelement polyprotein
           [imported] - Arabidopsis thaliana, partial (13%)
          Length = 718

 Score = 67.4 bits (163), Expect = 3e-12
 Identities = 42/152 (27%), Positives = 73/152 (47%), Gaps = 7/152 (4%)
 Frame = -3

Query: 43  KVTKGNLVVARGKKRGSLYMVAEEDMIA-------VTEAVNSSSIWHQRLGHMSEKGMKI 95
           +V + + ++  G  +G LYM+ + D ++        + ++N  ++WH RLGH   + + +
Sbjct: 716 EVIESSQLIGEGVTKGDLYMLEKLDPVSNYKCSFTSSSSLNKDALWHARLGHPHGRALNL 537

Query: 96  MASKGKMSNLKHVDLGVCEHCILGKQRKVSFSKAGRKSKLEKLKLVHTDVWGPAPVKSLG 155
           M       N        CE CILGK  K  F +     +     L++TD+W  AP  S  
Sbjct: 536 MLPGVVFENKN------CEACILGKHCKNVFPRTSTVYE-NCFDLIYTDLW-TAPSLSRD 381

Query: 156 GSRYYVTFIDDSTRKV*VYFLKNKSDVFSVFK 187
             +Y+VTFID+ ++   +  + +K  V   FK
Sbjct: 380 NHKYFVTFIDEKSKYTWLTLIPSKDRVIDAFK 285


>AW773859 
          Length = 538

 Score = 43.5 bits (101), Expect = 5e-05
 Identities = 30/122 (24%), Positives = 53/122 (42%), Gaps = 13/122 (10%)
 Frame = -3

Query: 50  VVARGKKRGSLYMVAEEDMIAVTEAVNS------------SSIWHQRLGHMSEKGMKIMA 97
           ++  G+    LY +  +D  + T A +              ++WH RLGH+S +  K+++
Sbjct: 356 MIGSGELFEGLYFLTTQDTPSATIASSQVQPQPQPTFLPQEALWHFRLGHLSNR--KLLS 183

Query: 98  SKGKMSNLKHVDLGVCEHCILGKQRKVSFS-KAGRKSKLEKLKLVHTDVWGPAPVKSLGG 156
                  +      VC+ C   + +K+ F     R SK    +L H D+WGP   +S+  
Sbjct: 182 LHSNFPFITIDQNSVCDICHYSRHKKLPFQLSTNRASKC--YELFHFDIWGPFSTQSIHN 9

Query: 157 SR 158
            R
Sbjct: 8   QR 3


>BQ122739 
          Length = 575

 Score = 33.9 bits (76), Expect = 0.042
 Identities = 21/81 (25%), Positives = 40/81 (48%), Gaps = 6/81 (7%)
 Frame = +1

Query: 28  LDDEGYHTTFGGGAWKVTKGNLVVARGKKRGSLYMVAEEDMIAVTEAVN------SSSIW 81
           LDD+GY      G  ++T  ++V+ +GK    L ++     +   +A+       SS   
Sbjct: 223 LDDQGYIFNIEDGDLRITNDSMVLMKGKLENGLSLL*GRTSMDTADAIYIRCNLVSSRSS 402

Query: 82  HQRLGHMSEKGMKIMASKGKM 102
             R+GH+S+ G+K + + G +
Sbjct: 403 AYRMGHVSKGGIKKLNTIGAL 465


>TC88498 similar to GP|21304712|gb|AAM45475.1 ethylene-responsive element
           binding protein 1 {Glycine max}, partial (45%)
          Length = 902

 Score = 33.1 bits (74), Expect = 0.071
 Identities = 29/93 (31%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
 Frame = +3

Query: 65  EEDMIAVTEAVNSSSIWHQRLGHMSEKGMKIMAS-KGKMSNLKHVDLG--VCEHCILGKQ 121
           E D I     VN+  IW +  G       K  A  +    N   V LG  V E       
Sbjct: 204 ESDTIVEAREVNTPPIWKRYKGVRRRPWGKFAAEIRDPKKNGARVWLGTYVTEEEAALAY 383

Query: 122 RKVSFSKAGRKSKLEKLKLVHTDVWGPAPVKSL 154
            K +F   GRK+KL    L+ +DV+ P P K +
Sbjct: 384 DKAAFKMRGRKAKLNFPHLIGSDVFTPEPEKEV 482


>TC89711 weakly similar to PIR|T10725|T10725 protein kinase Xa21 (EC
           2.7.1.-) A1  receptor type - long-staminate rice,
           partial (7%)
          Length = 1391

 Score = 29.3 bits (64), Expect = 1.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 124 VSFSKAGRKSKLEKLKLVHTDVWGP 148
           +S  K+      E L+L+HTDVWGP
Sbjct: 910 ISPFKSSTSHAQEVLELIHTDVWGP 836


>TC77374 weakly similar to GP|14517446|gb|AAK62613.1 AT5g14030/MUA22_2
           {Arabidopsis thaliana}, partial (88%)
          Length = 950

 Score = 28.9 bits (63), Expect = 1.3
 Identities = 27/83 (32%), Positives = 35/83 (41%), Gaps = 1/83 (1%)
 Frame = +1

Query: 112 VCEHCILGKQRKVSFSKAGRKSKLEKLKLVHTDVWGPAPVKSLGGSRYY-VTFIDDSTRK 170
           +C H        V F  A +K+ L +LK     V     + + G S  Y V+  DDS   
Sbjct: 130 LCSHA----SSDVPFIVAHKKASLNRLKTGAERVSVTIDIYNQGTSTAYDVSLSDDSWT- 294

Query: 171 V*VYFLKNKSDVFSVFKGTTKKT 193
                    SD+FSV  GTT KT
Sbjct: 295 ---------SDLFSVISGTTSKT 336


>TC93538 similar to SP|Q12644|NUIM_NEUCR NADH-ubiquinone oxidoreductase 23
           kDa subunit  mitochondrial precursor (EC 1.6.5.3) (EC
           1.6.99.3), partial (68%)
          Length = 634

 Score = 28.1 bits (61), Expect = 2.3
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +3

Query: 136 EKLKLVHTDVWGPAPVKSLGGSRYYVTFID 165
           EKL L + D W P   K+L  ++YYV FID
Sbjct: 453 EKL-LANGDKWEPEIAKNLEANQYYV*FID 539


>TC84967 similar to PIR|G86453|G86453 YUP8H12R.39. homolog F9L11.9
           [imported] - Arabidopsis thaliana, partial (20%)
          Length = 515

 Score = 27.7 bits (60), Expect = 3.0
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -1

Query: 113 CEHCILGKQRKVSFSKAGRKSKLEKLKL 140
           CEH +L  + K+SF++  R  K+E LKL
Sbjct: 476 CEHAMLLVRNKLSFNRFIRVIKIEALKL 393


>TC84764 similar to PIR|S71584|S71584 GTP-binding protein BG1 - Arabidopsis
           thaliana, partial (79%)
          Length = 705

 Score = 26.9 bits (58), Expect = 5.1
 Identities = 17/64 (26%), Positives = 35/64 (54%)
 Frame = +1

Query: 124 VSFSKAGRKSKLEKLKLVHTDVWGPAPVKSLGGSRYYVTFIDDSTRKV*VYFLKNKSDVF 183
           +   KAG+ + LEK+K V+T+V G  P + +      +  I+ + RK+  + L  +  + 
Sbjct: 283 LGIDKAGKTTLLEKIKSVYTNVEGLPPDRIVPTVGLNIGRIEVANRKLVFWDLGGQLGLR 462

Query: 184 SVFK 187
           S+++
Sbjct: 463 SIWE 474


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.320    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,036,814
Number of Sequences: 36976
Number of extensions: 76643
Number of successful extensions: 313
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of query: 196
length of database: 9,014,727
effective HSP length: 91
effective length of query: 105
effective length of database: 5,649,911
effective search space: 593240655
effective search space used: 593240655
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)