TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0065.12
         (1309 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CB893680 weakly similar to GP|1167523|db ORF(AA 1-1338) {Nicotia...    84  7e-32
BF635063 weakly similar to PIR|F84486|F84 probable retroelement ...   126  5e-29
AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsi...   103  6e-23
TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative ret...    61  3e-20
BG644690 weakly similar to GP|18542179|gb putative pol protein {...    92  2e-18
CB893805 similar to GP|10177935|d copia-type polyprotein {Arabid...    84  3e-16
BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F2...    80  4e-15
BG587156 similar to PIR|G85055|G8 probable polyprotein [imported...    74  3e-13
BG587174 similar to PIR|A47759|A4775 retrovirus-related reverse ...    74  4e-13
BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sati...    67  5e-11
BG646342 weakly similar to PIR|F84486|F84 probable retroelement ...    60  4e-09
BF648150 similar to GP|14586969|gb| pol polyprotein {Citrus x pa...    51  3e-06
AJ499215 weakly similar to GP|6642775|gb| gag-pol polyprotein {V...    50  4e-06
AW773859                                                               46  1e-04
TC93065                                                                34  3e-04
BQ122291                                                               43  0.001
BG645355 similar to PIR|G96590|G965 hypothetical protein T24C10....    42  0.002
TC80683 homologue to GP|8777424|dbj|BAA97014.1 gb|AAF56406.1~gen...    41  0.003
AW256617                                                               39  0.017
TC87868 similar to PIR|T05112|T05112 splicing factor 9G8-like SR...    38  0.029

>CB893680 weakly similar to GP|1167523|db ORF(AA 1-1338) {Nicotiana tabacum},
           partial (7%)
          Length = 780

 Score = 83.6 bits (205), Expect(2) = 7e-32
 Identities = 46/98 (46%), Positives = 66/98 (66%)
 Frame = -2

Query: 867 RGLIMMRFFSPVVRHTSIRAVLALVASRDMHLEQMDVKTTFLHGNLEEQIYMEQPEGFSE 926
           +G I++  F P+V+  +I  +L++VA  +++LE +DVKT FL G+L E IYM QPEGFS 
Sbjct: 578 KGRILL*NFVPIVKLNTIMFLLSIVAIENLYLE*LDVKTAFLRGDLVEDIYMHQPEGFS* 399

Query: 927 TGDGRLVCKLKRSLYGLKQSPRQ*YKRFDSYMLRIGYR 964
              G++V KLK+S+YGLKQ PRQ      +   R G+R
Sbjct: 398 E-VGKMVGKLKKSMYGLKQGPRQCI*SLKALCTRKGFR 288



 Score = 73.6 bits (179), Expect(2) = 7e-32
 Identities = 40/89 (44%), Positives = 55/89 (60%)
 Frame = -3

Query: 992  MLIAANHLHNVNELKTKLGKEFDMKDLGAAKKILGMEIHRDRGTKKLWLSQKSYVEGVLS 1051
            +L+  +++  +  LKT+  KE DMKDLG AKKI+GM+I  D+    L LSQ  Y+  VL 
Sbjct: 271  LLVVGSNIDEIKNLKTRFSKEIDMKDLGPAKKIIGMQIMIDKQKGVL*LSQVEYITRVLQ 92

Query: 1052 RFDMSKENPVSTPLANHFKLSLGQCSKTD 1080
             F+M     VST LA+HF LS  Q  +T+
Sbjct: 91   IFNMGNAILVSTTLASHFCLSHEQSPQTE 5


>BF635063 weakly similar to PIR|F84486|F84 probable retroelement pol
           polyprotein [imported] - Arabidopsis thaliana, partial
           (4%)
          Length = 677

 Score =  126 bits (317), Expect = 5e-29
 Identities = 66/178 (37%), Positives = 110/178 (61%), Gaps = 3/178 (1%)
 Frame = -2

Query: 1   GAKFEVTRFYGTGNFGLWHRRVKDLLAQQSLQKALRDEK--PTDIATVDWNEMKEKAASL 58
           G+K ++ +F G  +FGLW  +++ +L QQ  +KAL+ E   P  ++  +  EM +KA S 
Sbjct: 565 GSKRDIEKFTGDNDFGLWKVKMEAVLIQQKCEKALKGEVSLPVTMSRAEKTEMVDKARSA 386

Query: 59  IRLCVSDDLMNHILDLTTPKDVWDKLESLYMSKTLMNKLFAKQRLYSLKMQEGGDLQAHV 118
           I LC+ D ++  +    T   +W KL SLYM+K+L ++ F KQ+LYS +M E   +   +
Sbjct: 385 IVLCLGDKVLREVAKERTAASMWAKL*SLYMTKSLAHRQFLKQQLYSFRMVESKAIMEQL 206

Query: 119 YAFNNILADLTRLRVKVDDEDKAIILLRSLPGSYDHLVTTLTYGKD-SIKLDSISSTL 175
             FN IL DL  + V+++DE+KAI+LL +LP S++    T+ YGK+ ++ L+ + + L
Sbjct: 205 TEFNKILDDLENIEVQLEDEEKAILLLCALPKSFESFKDTMLYGKEGTVTLEEVQAAL 32


>AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsis thaliana},
           partial (9%)
          Length = 675

 Score =  103 bits (258), Expect(2) = 6e-23
 Identities = 54/139 (38%), Positives = 84/139 (59%), Gaps = 2/139 (1%)
 Frame = +1

Query: 861 KGIHSKRGLIMMRFFSPVVRHTSIRAVLALVASRDMHLEQMDVKTTFLHGNLEEQIYMEQ 920
           KG     G      FSPV++  +IR +L +  +    ++Q+D+   FL+G L+E++YM Q
Sbjct: 262 KGFSQTLGCDYTETFSPVIKPVTIRLILTIAITYKWEIQQIDINNAFLNGFLQEEVYMSQ 441

Query: 921 PEGFSETGDGRLVCKLKRSLYGLKQSPRQ*YKRFDSYMLRIGY--RRCDYDCCVYVRSLD 978
           P+GF E  +  LVCKL +SLYGLKQ+PR  Y+   S  ++ G+   RCD    +Y +   
Sbjct: 442 PQGF-EAANKSLVCKLNKSLYGLKQAPRAWYEXLTSAQIQFGFTKSRCDPSLLIYNQ--- 609

Query: 979 DGSFIFLLLYVDDMLIAAN 997
           +G+ I+L +YVDD+LI  +
Sbjct: 610 NGACIYLXIYVDDILITGS 666



 Score = 23.1 bits (48), Expect(2) = 6e-23
 Identities = 11/19 (57%), Positives = 13/19 (67%)
 Frame = +2

Query: 820 RHGILFSCHMERELLVASG 838
           +HGILF     R+LL ASG
Sbjct: 143 KHGILFLFLHTRKLLAASG 199


>TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative retroelement
           {Oryza sativa} [Oryza sativa (japonica cultivar-group)],
           partial (10%)
          Length = 823

 Score = 61.2 bits (147), Expect(2) = 3e-20
 Identities = 26/52 (50%), Positives = 37/52 (71%), Gaps = 1/52 (1%)
 Frame = +1

Query: 450 CKYCVL-GKQCRVRFKTGQHKTKGILDYVHSDVWGPTKEPSVGGFRYFLHLL 500
           CK+ +  G + +V F T  H+TKGILDY+HSD+WGP+K  S GG RY + ++
Sbjct: 22  CKHLLFFGNRKKVSFSTATHRTKGILDYIHSDLWGPSKVTSYGGRRYMMTII 177



 Score = 56.6 bits (135), Expect(2) = 3e-20
 Identities = 53/152 (34%), Positives = 72/152 (46%), Gaps = 2/152 (1%)
 Frame = +2

Query: 500 LMIFLVRSGFIF*NINLKSLPSSNCGRQRLRIRQGEK*SICGLIMELNTLTRTSCVSVRR 559
           LMIFL R GFIF  I ++  P S  G   L++RQG  *     I++ +++  T   S + 
Sbjct: 176 LMIFLGRFGFIFCGIKMRLFPHSRSGEFLLKLRQGRM*RSS*QIID*SSVVVTLMSSAQI 355

Query: 560 MEFRDTFL*GRHHSRMVLQKG*TRL*QRRQGAFG*MLVFQ--KVSGQQQSIWRAI*STGH 617
           M   DT       ++ VLQ  *+ L  R       ML ++   + G +Q +     ST  
Sbjct: 356 MVLLDTKPFQGIPNKTVLQNE*SGLYLRELDVCSQMLGYRIDVIFGSRQHLLHVTWSTVL 535

Query: 618 HELLWMEKLQNRCGQVTPLISVI*GFLGVQHM 649
           H      K Q   GQV  LI +I* FL VQHM
Sbjct: 536 HIQHLTSKFQKIFGQVILLIILI*EFLDVQHM 631


>BG644690 weakly similar to GP|18542179|gb putative pol protein {Zea mays},
           partial (22%)
          Length = 629

 Score = 91.7 bits (226), Expect = 2e-18
 Identities = 46/132 (34%), Positives = 81/132 (60%)
 Frame = -2

Query: 861 KGIHSKRGLIMMRFFSPVVRHTSIRAVLALVASRDMHLEQMDVKTTFLHGNLEEQIYMEQ 920
           +G + K G+     FSPV R  +IR ++A  A     L QMDVK+ F++G+L+E+++++Q
Sbjct: 394 QGYNQKEGIDYDEAFSPVARMEAIRILIAFAAFMGFKLYQMDVKSAFINGDLKEEVFVKQ 215

Query: 921 PEGFSETGDGRLVCKLKRSLYGLKQSPRQ*YKRFDSYMLRIGYRRCDYDCCVYVRSLDDG 980
           P GF +      V +L ++LYGLKQ+PR  Y+R   ++L+ G++R   D  +++    + 
Sbjct: 214 PPGFEDAEVPNHVFRLNKTLYGLKQAPRAWYERLSKFLLKNGFKRGKIDNTLFLLK-RE* 38

Query: 981 SFIFLLLYVDDM 992
             + + +YVDD+
Sbjct: 37  ELLIIQVYVDDI 2


>CB893805 similar to GP|10177935|d copia-type polyprotein {Arabidopsis
            thaliana}, partial (14%)
          Length = 778

 Score = 84.3 bits (207), Expect = 3e-16
 Identities = 53/173 (30%), Positives = 91/173 (51%), Gaps = 4/173 (2%)
 Frame = +3

Query: 861  KGIHSKRGLIMMRFFSPVVRHTSIRAVLALVAS--RD-MHLEQMDVKTTFLHGNLEEQIY 917
            KG   + G+     F+PV R  +IR V+AL A   RD + +  M    + +   + + + 
Sbjct: 243  KGYSQQYGVDYTEVFAPVARWDTIRMVIALAAQIKRDGVCIS*M*KAHSCMEN*MRKFLL 422

Query: 918  MEQPEGFSETGDGRLVC-KLKRSLYGLKQSPRQ*YKRFDSYMLRIGYRRCDYDCCVYVRS 976
            +            R++  ++KR+LYGLKQ+PR  Y R ++Y  + G+ +C Y+  ++V+ 
Sbjct: 423  INH-----RVM*RRVIS*RVKRALYGLKQAPRAWYSRIEAYFTKEGFEKCPYEHTLFVKL 587

Query: 977  LDDGSFIFLLLYVDDMLIAANHLHNVNELKTKLGKEFDMKDLGAAKKILGMEI 1029
             + G  + + LYVDD++   N  +   E K  + KEF+M DLG     LG+E+
Sbjct: 588  SEGGKILIISLYVDDLIFIGNDENMFEEFKKSMKKEFNMSDLGKMHYFLGVEV 746


>BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F20P5.25
            [imported] - Arabidopsis thaliana, partial (10%)
          Length = 744

 Score = 80.5 bits (197), Expect = 4e-15
 Identities = 48/148 (32%), Positives = 83/148 (55%), Gaps = 13/148 (8%)
 Frame = +2

Query: 933  VCKLKRSLYGLKQSPRQ*YKRFDSYMLRIGYRRCDYDCCVYVRSLDDGSFIFLLLYVDDM 992
            VC+L++S+YGLKQ+ RQ Y +    ++  GY +   D  ++ +   D SF  LL+YVDD+
Sbjct: 20   VCELQKSIYGLKQASRQWYSKLSESLISFGYLQSSSDFSLFTK-FKDSSFTTLLVYVDDI 196

Query: 993  LIAANHLHNVNELKTKLGKEFDMKDLGAAKKILGMEIHRDRGTKKLWLSQKSY------- 1045
            ++A N +  +  +K  L   F +KDLG+ +  LG+E+ R +  + + L+Q+ Y       
Sbjct: 197  VLAGNDISEIQHVKCFLIDRFKIKDLGSLRYFLGLEVARSK--QGILLNQRKYTLELLED 370

Query: 1046 -----VEGVLSRFDMS-KENPVSTPLAN 1067
                 V+  L+ +D+S K +   +PL N
Sbjct: 371  SGNLAVKSTLTPYDISLKLHNSDSPLYN 454


>BG587156 similar to PIR|G85055|G8 probable polyprotein [imported] -
           Arabidopsis thaliana, partial (17%)
          Length = 618

 Score = 74.3 bits (181), Expect = 3e-13
 Identities = 43/118 (36%), Positives = 65/118 (54%)
 Frame = -1

Query: 852 KSSRLA*LQKGIHSKRGLIMMRFFSPVVRHTSIRAVLALVASRDMHLEQMDVKTTFLHGN 911
           K +RL  + +G     G   +  F+PV +  +IR VL+L  +    L QMDVK  FL G 
Sbjct: 378 KKTRL--VARGFTLTYGEDYIETFAPVAKLHTIRIVLSLAVNLGWGLWQMDVKNAFLQGE 205

Query: 912 LEEQIYMEQPEGFSETGDGRLVCKLKRSLYGLKQSPRQ*YKRFDSYMLRIGYRRCDYD 969
           LE+++YM  P G         V +LK+++YGLKQSPR  Y +  + +   G+R+ + D
Sbjct: 204 LEDEVYMYPPPGLEHLVKRGNVLRLKKAIYGLKQSPRAWYNKLSTTLNGRGFRKSELD 31


>BG587174 similar to PIR|A47759|A4775 retrovirus-related reverse
           transcriptase homolog - rape retrotransposon copia-like
           (fragment), partial (84%)
          Length = 249

 Score = 73.9 bits (180), Expect = 4e-13
 Identities = 44/89 (49%), Positives = 54/89 (60%), Gaps = 7/89 (7%)
 Frame = -1

Query: 912 LEEQIYMEQPEGFSETGDGRLVCKLKRSLYGLKQSPRQ*YKRFDSYMLRIGYRRCDYDCC 971
           LEE+IYM QPEGF   G    VCKL++SLYGLKQSPRQ YKRFDSY       R  +   
Sbjct: 246 LEEKIYMTQPEGFLFPGKEDHVCKLRKSLYGLKQSPRQWYKRFDSY-------RSSWATT 88

Query: 972 VYVRSLDD-------GSFIFLLLYVDDML 993
             + ++           +I+L+LYVDDML
Sbjct: 87  GVLMTVVST*TR*RMSRYIYLVLYVDDML 1


>BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sativa (japonica
            cultivar-group)}, partial (8%)
          Length = 503

 Score = 67.0 bits (162), Expect = 5e-11
 Identities = 38/111 (34%), Positives = 60/111 (53%)
 Frame = +1

Query: 945  QSPRQ*YKRFDSYMLRIGYRRCDYDCCVYVRSLDDGSFIFLLLYVDDMLIAANHLHNVNE 1004
            QSPR  + RF   + + GY +C  D  ++++         L++YVDD+ +  +H   +  
Sbjct: 1    QSPRDWFDRFT*VVKKFGYIQCQTDHAMFIKHSSTVKKAILIVYVDDIFLTGDHGK*IKR 180

Query: 1005 LKTKLGKEFDMKDLGAAKKILGMEIHRDRGTKKLWLSQKSYVEGVLSRFDM 1055
            LK  L +EF++KDLG  K  LGME+ R +  K   +SQ+ YV  +L    M
Sbjct: 181  LKNLLAEEFEIKDLGNLKYFLGMEVARWK--KGSSISQRKYVLDLLKETRM 327


>BG646342 weakly similar to PIR|F84486|F84 probable retroelement pol
           polyprotein [imported] - Arabidopsis thaliana, partial
           (4%)
          Length = 599

 Score = 60.5 bits (145), Expect = 4e-09
 Identities = 35/103 (33%), Positives = 53/103 (50%), Gaps = 2/103 (1%)
 Frame = +2

Query: 55  AASLIRLCVSDDLMNHILDLTTPKDVWDKLESLYMSKTLMNKLFAKQRLYSLKMQEGGDL 114
           A S I LC+ D ++  +    T   +  KLE LYM+K+L ++ F KQ+LYS KM E   +
Sbjct: 2   ARSAIVLCLGDKVLREVAKEPTATSMCAKLEYLYMTKSLAHRQFLKQQLYSFKMVESKAI 181

Query: 115 QAHVYAFNNILADLTRLRVKVDDEDKAII--LLRSLPGSYDHL 155
              +  FN I+ DL  + V ++D    ++   L    G   HL
Sbjct: 182 TELLVEFNKIIGDLENIEVHLEDAGALMVWCCLEDEEGDVSHL 310


>BF648150 similar to GP|14586969|gb| pol polyprotein {Citrus x paradisi},
           partial (3%)
          Length = 658

 Score = 51.2 bits (121), Expect = 3e-06
 Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 1/122 (0%)
 Frame = +2

Query: 63  VSDDLMNHILDLTTPKDVWDKLESLYMSKTLMNKLFAKQRLYSLKMQEGGDLQAHVYAFN 122
           +SD L +      + KD+WDKLE+ YM +   +K F      + KM +   +   +Y   
Sbjct: 224 MSDSLFDIYQSSPSAKDLWDKLETRYMREDATSKKFLVSHFNNYKMVDNKSVMEQLYEIE 403

Query: 123 NILADLTRLRVKVDDEDKAIILLRSLPGSYDHLVTTLTYGKDSIKLDSISSTL-LQHAQR 181
            IL +  +  + +D+      ++  LP S+     T+ + K+ I L+ + + L L    R
Sbjct: 404 RILNNYKQHNMNMDETIIVSSIIDKLPPSWKDFKRTMKHKKEDISLEQLGNHLRLXEEYR 583

Query: 182 RQ 183
           +Q
Sbjct: 584 KQ 589


>AJ499215 weakly similar to GP|6642775|gb| gag-pol polyprotein {Vitis
           vinifera}, partial (18%)
          Length = 567

 Score = 50.4 bits (119), Expect = 4e-06
 Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 12/126 (9%)
 Frame = +3

Query: 267 SEEDLLCVSSVKCTDA---WVLDSGCSYHMTPHREWFNSFKLGDFGYVYLGDDKPCIIKG 323
           S+E LL +S+         W++DSGC++HMT  R+ F          V + +     ++G
Sbjct: 51  SKEQLLAMSTFATKQPSKYWLIDSGCTHHMTHDRDLFKELNKSTISKVRMLNGAHIEVEG 230

Query: 324 MRQVKIALDDGRVRTLSQVRYVPEVTKNMISLGTLHENGYS---------FKSEENRDIL 374
           +  V +    G  + +S V Y P++ ++++S+  L   GY           K + N+++L
Sbjct: 231 IGTVLVKSHSG-YKQISNVLYAPKLNQSLLSVPQLLTKGYKVLFEHEKCVIKDQNNKEVL 407

Query: 375 RVSKGA 380
           R    A
Sbjct: 408 RAQMKA 425


>AW773859 
          Length = 538

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 20/74 (27%), Positives = 35/74 (47%)
 Frame = -3

Query: 417 MWHMRLGHLSERGMMQLHKRNLLKGVRSCTIGLCKYCVLGKQCRVRFKTGQHKTKGILDY 476
           +WH RLGHLS R ++ LH       +   ++  C  C   +  ++ F+   ++     + 
Sbjct: 230 LWHFRLGHLSNRKLLSLHSNFPFITIDQNSV--CDICHYSRHKKLPFQLSTNRASKCYEL 57

Query: 477 VHSDVWGPTKEPSV 490
            H D+WGP    S+
Sbjct: 56  FHFDIWGPFSTQSI 15


>TC93065 
          Length = 783

 Score = 34.3 bits (77), Expect(2) = 3e-04
 Identities = 35/171 (20%), Positives = 73/171 (42%), Gaps = 9/171 (5%)
 Frame = +2

Query: 100 KQRLYSLKMQEGGDLQAHVYAFNNILADLTRLRVKVDDEDKAIILLRSLPGSYDHLVTTL 159
           ++   +LKM+E   ++      + ++  +  L   + D+     +L  LP  ++  +++L
Sbjct: 218 RREFEALKMKETETVREFSDRISKVVTQIRLLGEDLSDQRVVEKILVCLPEMFEAKISSL 397

Query: 160 TYGKDSIKLDSISST-LLQHAQRRQSVEEGGGSSGKCLFVKGGQG---RARGKGKAVDSG 215
              K+  ++        LQ +++R+S+       G  L    G+    ++ GK K     
Sbjct: 398 EENKNFSEITVAELVNALQASEQRRSLRMEENVEGAFLANNKGKNQSFKSFGKKKFPPCP 577

Query: 216 KKKRSKSKD-----RKTAECYSCKQIGHWKRDCPNRPGKSSNSNSSANVVQ 261
             K+    D     R   +C +C Q+GH ++ C N   K++     A VV+
Sbjct: 578 HCKKDTHLDKFCWYRPGVKCRACNQLGHVEKVCKN---KTNQQEQEARVVE 721



 Score = 29.3 bits (64), Expect(2) = 3e-04
 Identities = 16/54 (29%), Positives = 24/54 (43%)
 Frame = +3

Query: 54  KAASLIRLCVSDDLMNHILDLTTPKDVWDKLESLYMSKTLMNKLFAKQRLYSLK 107
           +A ++I   + DD+   IL+L   K+ W KL   Y       K+       SLK
Sbjct: 72  RALAIIHAALHDDIFIKILNLEIAKEAWSKLMEEYQGSERTKKMKVLNLEESLK 233


>BQ122291 
          Length = 487

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 33/156 (21%), Positives = 68/156 (43%), Gaps = 2/156 (1%)
 Frame = -2

Query: 34  ALRDEKPTDIATVDWNEMKEKAASLIRLCVSDDLMNHILDLTTPKDVWDKLESLYMS--K 91
           A R+    + A  +W +      + I   +S  L++  + L     VWD++ S   +  K
Sbjct: 483 AAREAGTRNPAYTEWEDKDSLLCTWILSRISPSLLSRFVLLRHSWQVWDEIHSYCFTQMK 304

Query: 92  TLMNKLFAKQRLYSLKMQEGGDLQAHVYAFNNILADLTRLRVKVDDEDKAIILLRSLPGS 151
           T   +L ++ R  +   +   +  A + A +  LA +      V   D   ++L +LP  
Sbjct: 303 TRSRQLRSELRSITKGSRTVSEFIARIRAISESLASIGD---PVSHRDLIEVVLEALPEE 133

Query: 152 YDHLVTTLTYGKDSIKLDSISSTLLQHAQRRQSVEE 187
           +D +V ++    + + LD + S LL    R++  ++
Sbjct: 132 FDPIVASVNAKSEVVSLDELESQLLTQESRKEKFKK 25


>BG645355 similar to PIR|G96590|G965 hypothetical protein T24C10.5 [imported]
           - Arabidopsis thaliana, partial (5%)
          Length = 627

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 29/91 (31%), Positives = 35/91 (37%), Gaps = 8/91 (8%)
 Frame = -1

Query: 184 SVEEGGGSSGKCLFVKGGQGRARGKGKAVDSGKKKRSKSKDRKTAECYSCKQIGHWKRDC 243
           +V   GG+SGKC   K  Q           S   + S      +  CY C Q GHW  +C
Sbjct: 534 TVSGSGGASGKCY--KCQQPGHWASNCPSMSAANRVSGGSGGASGNCYKCNQPGHWANNC 361

Query: 244 PN---RPGKSSNSNSSANVV-----QSDGSC 266
           PN    P    NSN+          Q DG C
Sbjct: 360 PNMSAAPQSHGNSNTGQGRYGIAQNQPDGRC 268



 Score = 34.3 bits (77), Expect = 0.32
 Identities = 21/76 (27%), Positives = 34/76 (44%)
 Frame = -1

Query: 191 SSGKCLFVKGGQGRARGKGKAVDSGKKKRSKSKDRKTAECYSCKQIGHWKRDCPNRPGKS 250
           SS +CL ++    +  G G  V++       S      +CY C+Q GHW  +CP+    +
Sbjct: 600 SSAQCLHLRNPPEQTAG-GAYVNTVSGSGGAS-----GKCYKCQQPGHWASNCPSMSAAN 439

Query: 251 SNSNSSANVVQSDGSC 266
             S  S     + G+C
Sbjct: 438 RVSGGSGG---ASGNC 400


>TC80683 homologue to GP|8777424|dbj|BAA97014.1
           gb|AAF56406.1~gene_id:K9P8.7~strong similarity to
           unknown protein {Arabidopsis thaliana}, partial (16%)
          Length = 1360

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 33/134 (24%), Positives = 57/134 (41%), Gaps = 33/134 (24%)
 Frame = +1

Query: 162 GKDSIKLDSISSTLLQHAQRRQSVEEGGGSSGKCLFVKGGQGRARG-KGKAVDSGKKKRS 220
           GKD  KL  IS  L  HA+  ++++ GGG        +G +G+ +  K K  D  +++RS
Sbjct: 793 GKDKSKLKDISGDL--HAKDAENLKTGGGKK----ISRGQKGKLKKMKEKYADQDEEERS 954

Query: 221 ------------------------KSKDRKTAE--------CYSCKQIGHWKRDCPNRPG 248
                                     K +K+          CY CK++GH  RDC  +P 
Sbjct: 955 IRMSLLASSGKPIKKEETLPVIETSDKGKKSDSGPIDAPKICYKCKKVGHLSRDCKEQPN 1134

Query: 249 KSSNSNSSANVVQS 262
              +S++++   ++
Sbjct: 1135DLLHSHATSEAEEN 1176


>AW256617 
          Length = 718

 Score = 38.5 bits (88), Expect = 0.017
 Identities = 24/72 (33%), Positives = 39/72 (53%)
 Frame = -2

Query: 346 PEVTKNMISLGTLHENGYSFKSEENRDILRVSKGAMTVMRAKRTAGNIYKLLGGTVMGDV 405
           P + K   S+ TL  NG++ +   ++DILR+  GA               LLG T++ D+
Sbjct: 330 P*IKK*FDSMHTL*ANGFANRINRDKDILRLRNGA---------------LLGKTIV*DI 196

Query: 406 ASVETDDDATKM 417
           ASV+ D+DA ++
Sbjct: 195 ASVDPDNDAAEI 160



 Score = 26.2 bits (56), Expect(2) = 5.3
 Identities = 12/37 (32%), Positives = 20/37 (53%)
 Frame = -2

Query: 199 KGGQGRARGKGKAVDSGKKKRSKSKDRKTAECYSCKQ 235
           KG   R   +G+     K+   ++K RK  +C++CKQ
Sbjct: 564 KGRVSRTC*EGRQTSFCKEIEVENKSRKIFQCHNCKQ 454



 Score = 22.3 bits (46), Expect(2) = 5.3
 Identities = 9/22 (40%), Positives = 14/22 (62%)
 Frame = -1

Query: 159 LTYGKDSIKLDSISSTLLQHAQ 180
           L  GKD+IKL+ I++ +    Q
Sbjct: 643 LINGKDTIKLEDIAAAITSRCQ 578


>TC87868 similar to PIR|T05112|T05112 splicing factor 9G8-like SR protein
           RSZp22 [validated] - Arabidopsis thaliana, partial (91%)
          Length = 860

 Score = 37.7 bits (86), Expect = 0.029
 Identities = 24/69 (34%), Positives = 28/69 (39%)
 Frame = +3

Query: 188 GGGSSGKCLFVKGGQGRARGKGKAVDSGKKKRSKSKDRKTAECYSCKQIGHWKRDCPNRP 247
           GGG  G      GG GR RG G    S  K            CY C + GH+ R+C NR 
Sbjct: 264 GGGGGG------GGGGRGRGGGGGGGSDLK------------CYECGEPGHFARECRNRG 389

Query: 248 GKSSNSNSS 256
           G  +    S
Sbjct: 390 GGGAGRRRS 416


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.337    0.146    0.474 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,465,189
Number of Sequences: 36976
Number of extensions: 664217
Number of successful extensions: 5001
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 2715
Number of HSP's successfully gapped in prelim test: 246
Number of HSP's that attempted gapping in prelim test: 2110
Number of HSP's gapped (non-prelim): 3190
length of query: 1309
length of database: 9,014,727
effective HSP length: 108
effective length of query: 1201
effective length of database: 5,021,319
effective search space: 6030604119
effective search space used: 6030604119
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 64 (29.3 bits)