BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0064b.8
(192 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC78091 similar to GP|17104531|gb|AAL34154.1 unknown protein {Ar... 37 0.005
AW690594 similar to GP|23498163|emb hypothetical protein {Plasmo... 34 0.031
TC91507 similar to GP|17065014|gb|AAL32661.1 Unknown protein {Ar... 34 0.040
TC92853 similar to GP|20268748|gb|AAM14077.1 unknown protein {Ar... 33 0.089
TC90024 similar to GP|21537200|gb|AAM61541.1 RNA recognition mot... 32 0.12
TC93063 similar to PIR|T08852|T08852 lustrin A - California red ... 32 0.15
TC81858 similar to GP|18252179|gb|AAL61922.1 unknown protein {Ar... 32 0.15
TC77523 homologue to GP|9954112|gb|AAG08959.1| tuber-specific an... 32 0.20
TC78476 homologue to SP|O22437|CHLD_PEA Magnesium-chelatase subu... 32 0.20
BQ144225 similar to GP|9800238|gb|A pr2.1 {rat cytomegalovirus M... 32 0.20
TC77697 similar to GP|3335335|gb|AAC27137.1| ESTs gb|F14113 and ... 31 0.26
TC82303 weakly similar to GP|18073451|emb|CAC83345. GAS-2 homolo... 31 0.34
TC80366 similar to GP|13877617|gb|AAK43886.1 protein kinase-like... 31 0.34
TC87729 similar to GP|9759461|dbj|BAB10377.1 gene_id:MAF19.15~un... 31 0.34
TC88762 similar to GP|22136928|gb|AAM91808.1 unknown protein {Ar... 30 0.44
BQ752416 homologue to SP|P52810|RS9_ 40S ribosomal protein S9 (S... 30 0.44
AW329015 weakly similar to PIR|T00349|T003 Avicelase III - Asper... 30 0.58
TC91956 similar to GP|17065014|gb|AAL32661.1 Unknown protein {Ar... 30 0.58
TC89427 weakly similar to GP|4557063|gb|AAD22502.1| expressed pr... 30 0.58
BQ140761 weakly similar to GP|18076245|emb phosphophoryn {Rattus... 30 0.75
>TC78091 similar to GP|17104531|gb|AAL34154.1 unknown protein {Arabidopsis
thaliana}, partial (52%)
Length = 1863
Score = 37.0 bits (84), Expect = 0.005
Identities = 33/109 (30%), Positives = 45/109 (41%), Gaps = 12/109 (11%)
Frame = +2
Query: 31 GDHGAATQAVESSAP----AATMSSPMVESSA-PAASVPSTRGESSAMDATVLDPVVDLS 85
GD A ++E+S P A SSP SSA P S +++ P+ D
Sbjct: 1139 GDAYKAEGSLENSEPTSFAAPLHSSPNPTSSAIPTESSTHPHATTTSSPIYSRQPIYDEP 1318
Query: 86 DPV----PTPPSPMVELSPYAIPQQPS---SEETSGEESSSDHEREGSS 127
P+ P PP+P +P IP PS + E+ S H GSS
Sbjct: 1319 SPMKTSEPLPPAPWDTQAPVVIPPPPSKYNQRQQFFEQQGSSHSSNGSS 1465
>AW690594 similar to GP|23498163|emb hypothetical protein {Plasmodium
falciparum 3D7}, partial (10%)
Length = 633
Score = 34.3 bits (77), Expect = 0.031
Identities = 20/56 (35%), Positives = 27/56 (47%)
Frame = +3
Query: 110 EETSGEESSSDHEREGSSEEEHILEEELDADVVPEGAHGGDDDLIQRVAPFPGGLM 165
EE EE +H+ E EEE EEE D D G++D I R++ P L+
Sbjct: 138 EEEEEEEEEDEHDDEEEEEEEEEEEEEEDDD------EEGEEDEIDRISTLPDPLL 287
Score = 30.0 bits (66), Expect = 0.58
Identities = 13/48 (27%), Positives = 24/48 (49%)
Frame = +3
Query: 105 QQPSSEETSGEESSSDHEREGSSEEEHILEEELDADVVPEGAHGGDDD 152
++ + EE GE + E + E+EH EEE + + E H +++
Sbjct: 45 EEHNEEEDEGEVEEEEDEHDEEEEDEHDEEEEEEEEEEEEDEHDDEEE 188
>TC91507 similar to GP|17065014|gb|AAL32661.1 Unknown protein {Arabidopsis
thaliana}, partial (14%)
Length = 699
Score = 33.9 bits (76), Expect = 0.040
Identities = 31/130 (23%), Positives = 47/130 (35%), Gaps = 9/130 (6%)
Frame = +2
Query: 11 SEDVEGTEDRHRRLH---ASSRRGDHGAATQAVESSAPAATMSSPMVESSAPAASVPSTR 67
SE+ E E RRL A +R D T ++ P++ P +S PS
Sbjct: 8 SEEEEEPEQLVRRLRKGKACARPEDEDLETNISRMRLNGERLNPPLIR---PLSSEPSRE 178
Query: 68 GESSAMDATVLDPVVDLSD------PVPTPPSPMVELSPYAIPQQPSSEETSGEESSSDH 121
S V+ P + +P PP+ +E + + +S + S H
Sbjct: 179 AHSPVPPPAVIPPTRPKQNGELPPVAIPPPPAKHMERERFFQENKDASNMSGHRRGLSLH 358
Query: 122 EREGSSEEEH 131
R GSS H
Sbjct: 359 SRNGSSSHSH 388
>TC92853 similar to GP|20268748|gb|AAM14077.1 unknown protein {Arabidopsis
thaliana}, partial (21%)
Length = 761
Score = 32.7 bits (73), Expect = 0.089
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 84 LSDPVPTPPSPMVELSPYAIPQQPSSEETSGEESSSDHE-REGSSEEEHILEEELD 138
+S P+PP P IP + S ++T G ++ +D E +E EEE EEE D
Sbjct: 282 ISFVAPSPPKP-------KIPVETSGKDTKGSDNDNDDEGKENEEEEEDEDEEEED 428
>TC90024 similar to GP|21537200|gb|AAM61541.1 RNA recognition
motif-containing protein SEB-4 {Arabidopsis thaliana},
partial (43%)
Length = 1209
Score = 32.3 bits (72), Expect = 0.12
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
Frame = +3
Query: 26 ASSRRGDHGAATQAVESSAPAATMSSPM---VESSAPAASVPSTRGESSAMDATVLDPVV 82
+SS G +++++AP T S+P +++ P+T E ++ A P
Sbjct: 630 SSSTMGSPYYYGYSMQAAAPRGTFSTPQPHRIQAGPSYLYYPTTPMEGASFSAAAYRP-- 803
Query: 83 DLSDPVPTPPSPMVELSPYAIPQQPSSEETSGEESSSD 120
L P+ PSP S Q+ SSE SG +S+
Sbjct: 804 -LQQPLIRQPSPTPSPSDSQTQQRTSSETASGVVITSE 914
>TC93063 similar to PIR|T08852|T08852 lustrin A - California red abalone,
partial (4%)
Length = 1058
Score = 32.0 bits (71), Expect = 0.15
Identities = 29/88 (32%), Positives = 36/88 (39%), Gaps = 1/88 (1%)
Frame = -1
Query: 52 PMVESSAPAASVPSTRGESSAMDATVLDPVVDLSDPVPTP-PSPMVELSPYAIPQQPSSE 110
P+V+ AP S S DA D +P P P P P E P A P +P +E
Sbjct: 713 PLVKKQAPRKSNVSIGAAEDEADAEADD------EPEPEPEPEPEAEPEPEAEP-EPEAE 555
Query: 111 ETSGEESSSDHEREGSSEEEHILEEELD 138
E + E E EEE E+E D
Sbjct: 554 PEPEAEPEPEAEPEPEDEEE---EQEPD 480
>TC81858 similar to GP|18252179|gb|AAL61922.1 unknown protein {Arabidopsis
thaliana}, partial (9%)
Length = 748
Score = 32.0 bits (71), Expect = 0.15
Identities = 25/81 (30%), Positives = 36/81 (43%), Gaps = 1/81 (1%)
Frame = +1
Query: 34 GAATQAVESSAPAATMSSPMVESSAPAASVPSTRGESSAMDATVLDPVVDLSDPVPTPPS 93
G A ++AP A+ ++P +++A S +T +SSA T S P PTP S
Sbjct: 133 GEAPSTSPTAAPKASHAAPAPKATATPPSSTTTPPKSSATSPTSSPAPKVSSPPSPTPTS 312
Query: 94 PMVEL-SPYAIPQQPSSEETS 113
+ SP P P S S
Sbjct: 313 AEAPVESPTESPPAPVSPTVS 375
>TC77523 homologue to GP|9954112|gb|AAG08959.1| tuber-specific and
sucrose-responsive element binding factor {Solanum
tuberosum}, partial (43%)
Length = 1513
Score = 31.6 bits (70), Expect = 0.20
Identities = 25/101 (24%), Positives = 44/101 (42%), Gaps = 11/101 (10%)
Frame = +2
Query: 52 PMVESSAPA----------ASVPSTRGESSAMDAT-VLDPVVDLSDPVPTPPSPMVELSP 100
P+VE+++P+ S+P +SS+ D+ V +PV P P PP + L P
Sbjct: 749 PLVETTSPSNSNDPPTSLSLSLPGVGVDSSSEDSNRVTEPVNTAPPPPPPPPPSAIPLMP 928
Query: 101 YAIPQQPSSEETSGEESSSDHEREGSSEEEHILEEELDADV 141
P ++S S S+E +++E + +V
Sbjct: 929 VMTTAVPVPMAVPMQQSGSVMPFSFSAELLSVMQEMIRTEV 1051
>TC78476 homologue to SP|O22437|CHLD_PEA Magnesium-chelatase subunit chlD
chloroplast precursor (Mg- protoporphyrin IX chelatase),
partial (68%)
Length = 1596
Score = 31.6 bits (70), Expect = 0.20
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Frame = +2
Query: 79 DPVVDLSDPVPTPPSPMVELSPYAIPQQPSSEETSGEESSSDHEREGSSE---EEHILEE 135
+P + P P PP P + S ++ EE EE D E+E E EE I +
Sbjct: 473 NPPEQQNQPPPPPPPPQNQESNEEQNEEEDKEEEEEEEDDKDEEKEEQQEQLPEEFIFDA 652
Query: 136 E 136
E
Sbjct: 653 E 655
>BQ144225 similar to GP|9800238|gb|A pr2.1 {rat cytomegalovirus Maastricht},
partial (6%)
Length = 842
Score = 31.6 bits (70), Expect = 0.20
Identities = 18/62 (29%), Positives = 22/62 (35%)
Frame = +3
Query: 87 PVPTPPSPMVELSPYAIPQQPSSEETSGEESSSDHEREGSSEEEHILEEELDADVVPEGA 146
P P PP+P P P QP ++ SG+ E H D P GA
Sbjct: 486 PAPHPPAPEAPGLPKTEPSQPGQQDVSGQPRKRGQPSESGPLGHH------DPSARPAGA 647
Query: 147 HG 148
G
Sbjct: 648 RG 653
>TC77697 similar to GP|3335335|gb|AAC27137.1| ESTs gb|F14113 and gb|T42122
come from this region. {Arabidopsis thaliana}, partial
(78%)
Length = 1365
Score = 31.2 bits (69), Expect = 0.26
Identities = 23/70 (32%), Positives = 35/70 (49%), Gaps = 1/70 (1%)
Frame = +2
Query: 45 PAATMSSPMVESSAPAASVPSTRGESSAMDATVLDPVV-DLSDPVPTPPSPMVELSPYAI 103
P +++SS + + S ST ++SA A L PV L+ P P PP P+V +
Sbjct: 167 PYSSLSSSLSHQLSNPTSFSSTM-KNSASKAVALKPVHRHLTPPPPPPPPPLVRGFLIPL 343
Query: 104 PQQPSSEETS 113
P Q SS ++
Sbjct: 344 PIQRSSSHSN 373
>TC82303 weakly similar to GP|18073451|emb|CAC83345. GAS-2 homologue
{Candida glabrata}, partial (7%)
Length = 846
Score = 30.8 bits (68), Expect = 0.34
Identities = 19/67 (28%), Positives = 29/67 (42%)
Frame = +1
Query: 52 PMVESSAPAASVPSTRGESSAMDATVLDPVVDLSDPVPTPPSPMVELSPYAIPQQPSSEE 111
P+ ++ P + P +S + + P L P P PP P+ L P A+P P
Sbjct: 256 PVTSTARPRPAPPPATALASPLSPPLPPPTASLPPP-PVPPMPLAALPP-ALPATPLLVA 429
Query: 112 TSGEESS 118
+S SS
Sbjct: 430 SSPSRSS 450
>TC80366 similar to GP|13877617|gb|AAK43886.1 protein kinase-like protein
{Arabidopsis thaliana}, partial (16%)
Length = 814
Score = 30.8 bits (68), Expect = 0.34
Identities = 25/85 (29%), Positives = 34/85 (39%), Gaps = 4/85 (4%)
Frame = +3
Query: 39 AVESSAPAATMSSPM-VESSAPAASVPSTRGESSAMDATVLDPVVDLSDPVPTPPSPMVE 97
A SS P +T ++P V SAP S P+T P S+ P+PP+
Sbjct: 18 ATPSSPPPSTPANPPPVTPSAPPPSTPATPSSPPPSTTPSAPPPSTPSNSPPSPPTTPAI 197
Query: 98 LSPY---AIPQQPSSEETSGEESSS 119
P P PS S ++S S
Sbjct: 198 SPPSGGGTTPSPPSRTPPSSDDSPS 272
>TC87729 similar to GP|9759461|dbj|BAB10377.1 gene_id:MAF19.15~unknown
protein {Arabidopsis thaliana}, partial (37%)
Length = 2210
Score = 30.8 bits (68), Expect = 0.34
Identities = 28/84 (33%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Frame = -1
Query: 42 SSAPAATMSSPMVESSA-----PAASVPSTRGESSAMDATVLDPVVDLSDPVPTPPSPMV 96
SS + ++SSP+ S+ P + PS SS P S PTPPSP
Sbjct: 365 SSLASLSVSSPLPSLSSSTL*SPTSLSPSLSASSSTSPCPSTSPSPS-SPSCPTPPSPSS 189
Query: 97 ELSPYAIPQQPSSEETSGEESSSD 120
ELS S ++S SSSD
Sbjct: 188 ELS----*GLDSCSDSSSSSSSSD 129
>TC88762 similar to GP|22136928|gb|AAM91808.1 unknown protein {Arabidopsis
thaliana}, partial (3%)
Length = 805
Score = 30.4 bits (67), Expect = 0.44
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Frame = +3
Query: 33 HGAATQAVESSAPAATMSSPMVESS-APAASVPSTRGESSAMDATVLDPV-VDLSDPVPT 90
+G A + + P + SSP S + S P++ SS + T P S PVPT
Sbjct: 48 NGIAPSPYQFNNPTSPSSSPSASSPVSTTTSPPASTPASSPVSTTTSPPASTPASSPVPT 227
Query: 91 ---PPSPMVELSP 100
PP+P SP
Sbjct: 228 TTSPPAPTPASSP 266
>BQ752416 homologue to SP|P52810|RS9_ 40S ribosomal protein S9 (S7).
{Podospora anserina}, partial (94%)
Length = 717
Score = 30.4 bits (67), Expect = 0.44
Identities = 16/56 (28%), Positives = 30/56 (53%)
Frame = +2
Query: 36 ATQAVESSAPAATMSSPMVESSAPAASVPSTRGESSAMDATVLDPVVDLSDPVPTP 91
A++ +S+ + + S+ V SSA A S ++R + + ++V P L+ P P P
Sbjct: 329 ASRLASTSSASPSPSTTPVSSSASATSASASRSSTFLLSSSVSTPRSTLTSPSPLP 496
>AW329015 weakly similar to PIR|T00349|T003 Avicelase III - Aspergillus
aculeatus, partial (5%)
Length = 683
Score = 30.0 bits (66), Expect = 0.58
Identities = 25/122 (20%), Positives = 49/122 (39%), Gaps = 1/122 (0%)
Frame = +3
Query: 9 STSEDVEGTEDRHRRLHASSRRGDHGAATQAVESSAPAATMSSPMVES-SAPAASVPSTR 67
STS+D + + + +++GD A + + +S +T ++ S S+P+ S +
Sbjct: 111 STSDDNSYQDTPRPKPNTENQKGDTDATSTSTSTSTSTSTSTATDTSSTSSPSTSFTTCT 290
Query: 68 GESSAMDATVLDPVVDLSDPVPTPPSPMVELSPYAIPQQPSSEETSGEESSSDHEREGSS 127
SS + D P P P + Y S ++ +G + E + S
Sbjct: 291 SSSSTSSSAPAD--------TPRPSDPGSDSDDYG--SDDSDDDGTGHGDRAGEELDSSD 440
Query: 128 EE 129
+E
Sbjct: 441 DE 446
>TC91956 similar to GP|17065014|gb|AAL32661.1 Unknown protein {Arabidopsis
thaliana}, partial (26%)
Length = 863
Score = 30.0 bits (66), Expect = 0.58
Identities = 35/127 (27%), Positives = 47/127 (36%), Gaps = 8/127 (6%)
Frame = +1
Query: 11 SEDVEGTEDRHRRLH---ASSRRGDHGAATQAVESSAPAATMSSPMVESSAPAASVPSTR 67
+E+ E E RRL A R D Q + S ++ P++ P + PS
Sbjct: 214 AEEEEEPEQLFRRLRKGKACVRPEDEETKPQFPQLSLLEERLNRPLIR---PLSLEPSQE 384
Query: 68 GESSAMDATVLDPVVDLSD---PVPTPPSPM--VELSPYAIPQQPSSEETSGEESSSDHE 122
+ A V P + PV PP P+ VE Y + S S S H
Sbjct: 385 ANGCLVPAIVPPPSAKHNGELPPVAIPPPPLKHVEREKYFQHNKDSGTLASHIRGLSLHS 564
Query: 123 REGSSEE 129
R GSS E
Sbjct: 565 RNGSSSE 585
>TC89427 weakly similar to GP|4557063|gb|AAD22502.1| expressed protein
{Arabidopsis thaliana}, partial (50%)
Length = 753
Score = 30.0 bits (66), Expect = 0.58
Identities = 14/47 (29%), Positives = 24/47 (50%)
Frame = +1
Query: 106 QPSSEETSGEESSSDHEREGSSEEEHILEEELDADVVPEGAHGGDDD 152
+ ++ + E+ +D + G ++E E+ D VP GA G DDD
Sbjct: 325 EDDDDDVNDEDDDNDEDFSGDEDDEDADPED---DPVPNGAGGSDDD 456
>BQ140761 weakly similar to GP|18076245|emb phosphophoryn {Rattus
norvegicus}, partial (9%)
Length = 620
Score = 29.6 bits (65), Expect = 0.75
Identities = 35/141 (24%), Positives = 55/141 (38%), Gaps = 18/141 (12%)
Frame = +1
Query: 2 KGEKRSRSTSEDVEGTEDRHRRLHASSRRGDHGAATQAVESSAPAATMSSPMVE------ 55
K +K+S + EDV+ D + + ++ H A + A AT + +
Sbjct: 70 KSDKKSATAPEDVQTDLDL---VQSFLKQTGHDKAASTLTGFAAWATKQAAQSDAMDVDE 240
Query: 56 -SSAPAASVPSTRGESSAMDATVLDPVVDLSD-----------PVPTPPSPMVELSPYAI 103
SS + S S + S D+ D D SD PVP P + + A
Sbjct: 241 KSSDSSDSDSSDSSDGSDSDSDASDDSDDSSDSSSDDSSSDEEPVPAPKKEKAKKAKKA- 417
Query: 104 PQQPSSEETSGEESSSDHERE 124
+ SS S ++SSS+ E E
Sbjct: 418 -KSVSSSSDSSDDSSSESESE 477
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.307 0.125 0.346
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,694,151
Number of Sequences: 36976
Number of extensions: 63556
Number of successful extensions: 816
Number of sequences better than 10.0: 112
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of query: 192
length of database: 9,014,727
effective HSP length: 91
effective length of query: 101
effective length of database: 5,649,911
effective search space: 570641011
effective search space used: 570641011
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 55 (25.8 bits)
Lotus: description of TM0064b.8