BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0063.10
(565 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC90374 similar to PIR|T00422|T00422 probable SWI/SNF family tra... 247 8e-90
TC80835 weakly similar to PIR|F84747|F84747 probable SWI/SNF com... 133 2e-31
TC84169 similar to GP|18377706|gb|AAL67003.1 unknown protein {Ar... 72 6e-13
TC80381 similar to PIR|F84747|F84747 probable SWI/SNF complex su... 55 7e-08
BQ141909 weakly similar to GP|14253159|emb VMP3 protein {Volvox ... 40 0.003
TC91278 similar to GP|18642468|emb|CAD22882. transcriptional ada... 38 0.009
TC84888 similar to GP|21322752|dbj|BAB78536. cold shock protein-... 35 0.077
TC79002 similar to GP|15375305|gb|AAK54745.2 putative transcript... 34 0.13
BI308304 similar to GP|18642468|em transcriptional adaptor {Zea ... 33 0.22
TC89583 similar to GP|2108311|emb|CAB08855.1 IgG1/kappa antibody... 33 0.22
BQ151438 similar to GP|18539492|gb ATP sulfurylase {Glycine max}... 32 0.65
TC85918 similar to GP|13562014|gb|AAK30610.1 fibroin 1 {Plectreu... 32 0.85
TC87092 similar to PIR|D84900|D84900 hypothetical protein At2g46... 32 0.85
TC91076 similar to PIR|H96747|H96747 unknown protein T10D10.14 [... 31 1.1
BI267808 similar to GP|6729048|gb|A unknown protein 3' partial ... 31 1.1
TC91709 homologue to GP|21213868|emb|CAD12767. LHY protein {Phas... 31 1.1
AW257087 homologue to GP|6683126|dbj KIAA0339 protein {Homo sapi... 31 1.5
TC83278 similar to GP|9294065|dbj|BAB02022.1 contains similarity... 31 1.5
BQ144891 similar to GP|15528629|dbj hypothetical protein {Oryza ... 30 1.9
TC85286 similar to GP|3776572|gb|AAC64889.1| ESTs gb|R65052 gb|... 30 1.9
>TC90374 similar to PIR|T00422|T00422 probable SWI/SNF family transcription
activator [imported] - Arabidopsis thaliana, partial
(40%)
Length = 1543
Score = 247 bits (630), Expect(2) = 8e-90
Identities = 126/177 (71%), Positives = 140/177 (78%)
Frame = +1
Query: 1 MEVLKDPNSNPGRTDDSESELELYTIPSSSKWFAWDEIHETERTALKEFFDGTSISRTPK 60
ME KDP S +SELELYTIPSSSKWFAWDEIHETE+TA KE+FDGTSI+RTPK
Sbjct: 97 MEGSKDPIS--------DSELELYTIPSSSKWFAWDEIHETEKTAFKEYFDGTSITRTPK 252
Query: 61 VYKEYRDFVINKYREDPSRKLTFTEVRKSLVGDVTLLRKVFLFLESCGLINYGVGEAEKE 120
+YKEYRDF+INKYRE+PSR+LTFTEVRKSLVGDVT L KVFLFLE GLINYG A +
Sbjct: 253 IYKEYRDFIINKYREEPSRRLTFTEVRKSLVGDVTFLNKVFLFLECWGLINYGAPSAGND 432
Query: 121 EEREDEEEGEGERCKVRVEEGAPNGIRVVATPNSLKPLSAPRNAKSGGGGGGSVSGG 177
E E+E E ERCK++VEEGAPNGIRVVATPNSLKP+S PR+ K GGG G
Sbjct: 433 GEA--EKEHEKERCKLKVEEGAPNGIRVVATPNSLKPISLPRDTKIAAGGGDESGAG 597
Score = 199 bits (507), Expect(3) = 4e-86
Identities = 111/158 (70%), Positives = 124/158 (78%), Gaps = 2/158 (1%)
Frame = +3
Query: 230 KNGNYGEKRSVEDFILNESNENSVKQSTVWT--EGETLLLLESVLKHGDDWELVAQSVQT 287
K NYGEKRS+ F + N Q+TV + EGETLLLLESVLKHGDDWELVAQSV+T
Sbjct: 750 KTENYGEKRSMGGFQIKRVK*N*C-QTTVLSGPEGETLLLLESVLKHGDDWELVAQSVRT 926
Query: 288 KTKLDCISKLIELPFGELMLGSAHRNDNINIANGIVNNAIQVQSSSSDHQETSKTQNQTP 347
KTKL+CISKLIELPFGELML S RNDN N GIVNN QVQ SSSDHQETS TQ+Q+
Sbjct: 927 KTKLECISKLIELPFGELMLASVRRNDNSNSVTGIVNNRNQVQVSSSDHQETSMTQDQSS 1106
Query: 348 ELTSEKEPNGDAVNESPSKRQRVAALSESSSSLMKQVG 385
E +E E NGDAVNE+PSKR+RV+ LS+SSSSLMKQ G
Sbjct: 1107EPKNEVEQNGDAVNENPSKRRRVSTLSDSSSSLMKQGG 1220
Score = 102 bits (254), Expect(2) = 8e-90
Identities = 53/89 (59%), Positives = 63/89 (70%), Gaps = 3/89 (3%)
Frame = +2
Query: 177 GAGVKLPPLASFADVYGDLMSAKELNCGICGDKCGFEHYRSTKDNFTICMKCFKNGN-YG 235
G GVK+ PLAS++DVYGDL+ KE+NCG CGDKCG HYRSTKDNF IC KCFKNG +G
Sbjct: 590 GLGVKIAPLASYSDVYGDLIRRKEVNCGNCGDKCGSGHYRSTKDNFIICTKCFKNGKLWG 769
Query: 236 EKRSVEDFILNESNENSV--KQSTVWTEG 262
EK V I N +++ + S VWT G
Sbjct: 770 EK--VHGRISN*TSQVKLVPNHSAVWT*G 850
Score = 79.7 bits (195), Expect(3) = 4e-86
Identities = 44/57 (77%), Positives = 47/57 (82%)
Frame = +2
Query: 449 STQAEKDDRGPKDDIPLPLRLRAGIATALGAAAARAKLMADQEDREIEHLVATIIEA 505
STQ+E KDDIPL LR+RA I TALGA AARAKL+ADQEDREIEHLVATIIEA
Sbjct: 1388 STQSEV-----KDDIPLTLRIRAAIGTALGATAARAKLLADQEDREIEHLVATIIEA 1543
Score = 79.3 bits (194), Expect(3) = 4e-86
Identities = 43/64 (67%), Positives = 48/64 (74%)
Frame = +1
Query: 383 QVGLISTSVDPHITAAAADAAITALCDENLCPREIFDVEEDYASSANSLISDSERAHEVE 442
+VGL+ST VDPH+TAAAA AAITALCDEN PR+IFDVEED AS+ RA E E
Sbjct: 1213 RVGLLSTVVDPHVTAAAASAAITALCDENSLPRDIFDVEEDNASA---------RALEAE 1365
Query: 443 GLEM 446
GLEM
Sbjct: 1366 GLEM 1377
>TC80835 weakly similar to PIR|F84747|F84747 probable SWI/SNF complex
subunit SW13 [imported] - Arabidopsis thaliana, partial
(34%)
Length = 830
Score = 133 bits (334), Expect = 2e-31
Identities = 93/274 (33%), Positives = 134/274 (47%), Gaps = 1/274 (0%)
Frame = +2
Query: 17 SESELELYTIPSSSKWFAWDEIHETERTALKEFFDGTSISRTPKVYKEYRDFVINKYRED 76
+ S+ L +PS S+WF+WD IHE E + E S+ P+VYK YR+ ++ +R +
Sbjct: 185 TSSDANLILVPSHSRWFSWDSIHECEIRNIPES------SKNPRVYKYYRNSIVKFFRFN 346
Query: 77 PSRKLTFTEVRKSLVGDVTLLRKVFLFLESCGLINYGVGEA-EKEEEREDEEEGEGERCK 135
P+RK+TFT+VRK+LVGDV +R+VF FLE+ GLINY + K + ED++
Sbjct: 347 PNRKITFTDVRKTLVGDVGSIRRVFDFLEAWGLINYHPSSSLSKPLKWEDKD-------- 502
Query: 136 VRVEEGAPNGIRVVATPNSLKPLSAPRNAKSGGGGGGSVSGGAGVKLPPLASFADVYGDL 195
KP +A +A+S A VK
Sbjct: 503 -------------------TKPDAASNSAES--------PSPAPVK-------------- 559
Query: 196 MSAKELNCGICGDKCGFEHYRSTKDNFTICMKCFKNGNYGEKRSVEDFILNESNENSVKQ 255
AK + C C + C + K+N T+C +CF GNY S +F E +E + +
Sbjct: 560 -EAKRI-CSGCKNLCVMACFACEKNNMTLCARCFIRGNYRIGMSNTEFKRVEISEETKNE 733
Query: 256 STVWTEGETLLLLESVLKHGDDWELVAQSVQTKT 289
WTE ETL LLE++ GDDW+ VA V +T
Sbjct: 734 ---WTEKETLNLLEAITNFGDDWKRVAHQVVGRT 826
>TC84169 similar to GP|18377706|gb|AAL67003.1 unknown protein {Arabidopsis
thaliana}, partial (14%)
Length = 884
Score = 72.0 bits (175), Expect = 6e-13
Identities = 35/133 (26%), Positives = 70/133 (52%)
Frame = +1
Query: 1 MEVLKDPNSNPGRTDDSESELELYTIPSSSKWFAWDEIHETERTALKEFFDGTSISRTPK 60
ME +P R+ D+ + + +P+ WF+W +IH E+ + FF+G S +RTP
Sbjct: 346 MEAEIEPEFKAIRSRDANA----HVVPTHCGWFSWSDIHSIEKRMMPSFFNGISENRTPD 513
Query: 61 VYKEYRDFVINKYREDPSRKLTFTEVRKSLVGDVTLLRKVFLFLESCGLINYGVGEAEKE 120
Y E R++++ K+ +P+ ++ ++ + +GD +++ FL+ GLIN+ +
Sbjct: 514 KYMEIRNWIMKKFHSNPNIQIELKDLSELDIGDSDARQEIMEFLDYWGLINFHPFPSTDS 693
Query: 121 EEREDEEEGEGER 133
++GE E+
Sbjct: 694 AVASTGDDGEAEK 732
>TC80381 similar to PIR|F84747|F84747 probable SWI/SNF complex subunit SW13
[imported] - Arabidopsis thaliana, partial (10%)
Length = 892
Score = 55.1 bits (131), Expect = 7e-08
Identities = 37/186 (19%), Positives = 84/186 (44%)
Frame = +1
Query: 361 NESPSKRQRVAALSESSSSLMKQVGLISTSVDPHITAAAADAAITALCDENLCPREIFDV 420
++ SKR + L+++S+ +M Q +S + AAA AA+T+L
Sbjct: 178 SDKSSKRMCLTPLADASNPIMAQAAFLSALAGTEVAQAAAQAALTSL------------- 318
Query: 421 EEDYASSANSLISDSERAHEVEGLEMDRSTQAEKDDRGPKDDIPLPLRLRAGIATALGAA 480
S+ + R+ L+ D + + + ++ +
Sbjct: 319 -----SNVYKSTRINYRSFPRNTLQQDAAVASN----------------GGNASDSIQGS 435
Query: 481 AARAKLMADQEDREIEHLVATIIEAQIGKLQHKVKHFDELELLMKKEHAEIEELKDSILT 540
RA L ++E+ ++E ++ + E Q+ +Q K+ +F++L++LM+KE ++E+ K
Sbjct: 436 LLRANLQLEKEESDVEKAISEVTEVQMKNIQDKLINFEDLDVLMEKERQQLEQTKSLFFL 615
Query: 541 ERIDVL 546
+++++L
Sbjct: 616 DQLNLL 633
>BQ141909 weakly similar to GP|14253159|emb VMP3 protein {Volvox carteri f.
nagariensis}, partial (13%)
Length = 1223
Score = 39.7 bits (91), Expect = 0.003
Identities = 31/86 (36%), Positives = 38/86 (44%)
Frame = +3
Query: 94 VTLLRKVFLFLESCGLINYGVGEAEKEEEREDEEEGEGERCKVRVEEGAPNGIRVVATPN 153
V LL +F FL S L G+ + EE + +EG GE VR EEG G
Sbjct: 42 VFLLPPIFFFLPSLFLN----GKIKTTEEIQRRKEGGGEEV-VR*EEGVKGGSGGRGGRG 206
Query: 154 SLKPLSAPRNAKSGGGGGGSVSGGAG 179
+ R + GGGGGG GG G
Sbjct: 207 GGERRGGRRGEEGGGGGGGGEGGGGG 284
>TC91278 similar to GP|18642468|emb|CAD22882. transcriptional adaptor {Zea
mays}, partial (19%)
Length = 686
Score = 38.1 bits (87), Expect = 0.009
Identities = 38/140 (27%), Positives = 51/140 (36%), Gaps = 2/140 (1%)
Frame = +1
Query: 162 RNAKSGGGGGGSVSG-GAGVKLPPLASFADVYGDLMSAKELNCGICGDKCGFEHYRSTKD 220
+NA SG V+G GAG L D+ + C C D
Sbjct: 280 KNAASGDNSESGVAGQGAGEAKRALYHCNYCNKDITGKIRIKCAKCPD------------ 423
Query: 221 NFTICMKCFKNGNYGEKRSVEDFILNESNENSVKQSTVWTEGETLLLLESVLKHG-DDWE 279
F +C++CF G N N W + +LLLE + +G +W
Sbjct: 424 -FDLCIECFSVGAEVTPHKSNHNYRVMDNLNFHFICPGWHADDEILLLEGIEMYGMGNWA 600
Query: 280 LVAQSVQTKTKLDCISKLIE 299
VA+ V TK K CI L E
Sbjct: 601 EVAEHVGTKNKEACIEHL*E 660
>TC84888 similar to GP|21322752|dbj|BAB78536. cold shock protein-1 {Triticum
aestivum}, partial (58%)
Length = 612
Score = 35.0 bits (79), Expect = 0.077
Identities = 21/52 (40%), Positives = 23/52 (43%), Gaps = 2/52 (3%)
Frame = +2
Query: 130 EGERCKVRVEEGAPNGIRV--VATPNSLKPLSAPRNAKSGGGGGGSVSGGAG 179
EGE + VE G + V PN P APR GGGGG GG G
Sbjct: 185 EGEAVEFIVEAGDDGRTKAIDVTGPNGAPPQGAPRQEMGYGGGGGRGGGGYG 340
>TC79002 similar to GP|15375305|gb|AAK54745.2 putative transcription factor
MYB124 {Arabidopsis thaliana}, partial (54%)
Length = 2304
Score = 34.3 bits (77), Expect = 0.13
Identities = 15/58 (25%), Positives = 30/58 (50%), Gaps = 1/58 (1%)
Frame = +3
Query: 237 KRSVEDFILNESNENSVKQSTVWTEGETLLLLESVLKHG-DDWELVAQSVQTKTKLDC 293
K+ + +LNE ++ + WT+ E +L + + HG ++W ++A + KT C
Sbjct: 537 KKQKQKQLLNEESKKKERHIVTWTQEEDDILRDQIGIHGTENWAIIASKFKDKTTRQC 710
>BI308304 similar to GP|18642468|em transcriptional adaptor {Zea mays},
partial (24%)
Length = 781
Score = 33.5 bits (75), Expect = 0.22
Identities = 25/102 (24%), Positives = 41/102 (39%), Gaps = 1/102 (0%)
Frame = +2
Query: 194 DLMSAKELNCGICGDKCGFEHYRSTKDNFTICMKCFKNGNYGEKRSVEDFILNESNENSV 253
D+ + C +C D F +C++CF G N +
Sbjct: 380 DISGKIRIKCAVCQD-------------FDLCIECFSVGVELTPHKSNHPYRVMDNLSFP 520
Query: 254 KQSTVWTEGETLLLLESVLKHG-DDWELVAQSVQTKTKLDCI 294
W+ E +LLLE++ +G +W VA ++ TK+K CI
Sbjct: 521 LICPDWSAEEEMLLLEALDMYGFGNWNDVADNIGTKSKSQCI 646
>TC89583 similar to GP|2108311|emb|CAB08855.1 IgG1/kappa antibody {Mus
musculus}, partial (8%)
Length = 756
Score = 33.5 bits (75), Expect = 0.22
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 147 RVVATPNSLKPLSAPRNAKSGGGGGGSVSGGAG 179
R + P S+ P++ + SGG GGGS GG G
Sbjct: 581 RTTSIPESMIPVTVGGGSSSGGSGGGSSGGGGG 679
>BQ151438 similar to GP|18539492|gb ATP sulfurylase {Glycine max}, partial
(29%)
Length = 643
Score = 32.0 bits (71), Expect = 0.65
Identities = 20/47 (42%), Positives = 25/47 (52%)
Frame = +1
Query: 116 EAEKEEEREDEEEGEGERCKVRVEEGAPNGIRVVATPNSLKPLSAPR 162
E E+E ERE E E E C++R EE P + P SL LS+ R
Sbjct: 64 ERERERERERERERERASCQIRHEEWLP-WLPFCPKPLSLLTLSSKR 201
Score = 29.3 bits (64), Expect = 4.2
Identities = 17/45 (37%), Positives = 23/45 (50%)
Frame = +3
Query: 116 EAEKEEEREDEEEGEGERCKVRVEEGAPNGIRVVATPNSLKPLSA 160
E E+E ERE E E E ER + R E R PNS + +++
Sbjct: 12 ERERERERERERERERERERERERERERERERESLVPNSARGMAS 146
>TC85918 similar to GP|13562014|gb|AAK30610.1 fibroin 1 {Plectreurys
tristis}, partial (8%)
Length = 4117
Score = 31.6 bits (70), Expect = 0.85
Identities = 21/104 (20%), Positives = 46/104 (44%), Gaps = 7/104 (6%)
Frame = -1
Query: 286 QTKTKLDCISKLIELPFGELMLGSAHRNDNINIANGI-------VNNAIQVQSSSSDHQE 338
+T+TK++ ISK + P E + +++ I NG+ + ++ + S+ +
Sbjct: 724 ETETKVEEISKAVNEPVRETLASKFEKDEEETIQNGVDNLEKERIEEPVKTEVESTKEND 545
Query: 339 TSKTQNQTPELTSEKEPNGDAVNESPSKRQRVAALSESSSSLMK 382
T+ P+ T K P+++Q +++ SL+K
Sbjct: 544 TTTISKDLPKETPAK----------PAQKQSNNIIAKVKQSLVK 443
>TC87092 similar to PIR|D84900|D84900 hypothetical protein At2g46240
[imported] - Arabidopsis thaliana, partial (5%)
Length = 1878
Score = 31.6 bits (70), Expect = 0.85
Identities = 23/97 (23%), Positives = 45/97 (45%), Gaps = 9/97 (9%)
Frame = +3
Query: 315 NINIANGIVNNAIQVQSSSSDHQETSKTQNQTPELT---------SEKEPNGDAVNESPS 365
++N+ N +N Q + +S+ + T + +P+ SE + D+ + +
Sbjct: 333 SLNVQNEKLNQEQQEEKVASEKDSSEGTSDGSPKEQFCMKDDDGRSESRSHVDSASSERT 512
Query: 366 KRQRVAALSESSSSLMKQVGLISTSVDPHITAAAADA 402
K +ALSE + + M GLI+ P + A A+D+
Sbjct: 513 KPHVDSALSERTKTTMLPNGLINEDSSPVMAADASDS 623
>TC91076 similar to PIR|H96747|H96747 unknown protein T10D10.14 [imported] -
Arabidopsis thaliana, partial (9%)
Length = 834
Score = 31.2 bits (69), Expect = 1.1
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +3
Query: 307 LGSAHRNDNINIANGIVNNA--IQVQSSSSDHQETSKTQNQTPEL 349
L +N N+ + N ++N A +Q+Q HQ+ QNQ P++
Sbjct: 606 LNGVGQNSNMPLGNHLLNKASPLQIQMLQQQHQQQQLQQNQQPQM 740
>BI267808 similar to GP|6729048|gb|A unknown protein 3' partial {Arabidopsis
thaliana}, partial (8%)
Length = 414
Score = 31.2 bits (69), Expect = 1.1
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 246 NESNENSVKQSTVWTEGETLLLLESVLKHGDDWELVAQSV 285
N + S K + W++GE E+ KHG DW VA +V
Sbjct: 232 NGKKKLSDKLGSQWSKGELERFYEAYRKHGKDWXKVAAAV 351
>TC91709 homologue to GP|21213868|emb|CAD12767. LHY protein {Phaseolus
vulgaris}, partial (8%)
Length = 649
Score = 31.2 bits (69), Expect = 1.1
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +1
Query: 239 SVEDFILNESNENSV-KQSTVWTEGETLLLLESVLKHGDDWELVAQSVQTKT 289
S ED +L ++ KQ WTE E LE++ +G W+ + + + TKT
Sbjct: 484 SGEDVVLKTRKPYTITKQRERWTEDEHNRFLEALKLYGRAWQRIEEHIGTKT 639
>AW257087 homologue to GP|6683126|dbj KIAA0339 protein {Homo sapiens},
partial (2%)
Length = 466
Score = 30.8 bits (68), Expect = 1.5
Identities = 16/80 (20%), Positives = 42/80 (52%)
Frame = +1
Query: 324 NNAIQVQSSSSDHQETSKTQNQTPELTSEKEPNGDAVNESPSKRQRVAALSESSSSLMKQ 383
++ ++V S S ++S + + + ++S K+P A +P+K++ + S+S SS
Sbjct: 139 SSKMEVDSDSDSDSDSSSSSSTSSSVSSVKKPAVSAAKATPAKKEESDSDSDSDSSSSSS 318
Query: 384 VGLISTSVDPHITAAAADAA 403
S+S +++++ ++
Sbjct: 319 SSSSSSSSSSSSSSSSSSSS 378
>TC83278 similar to GP|9294065|dbj|BAB02022.1 contains similarity to myb
proteins~gene_id:MRC8.8 {Arabidopsis thaliana}, partial
(11%)
Length = 920
Score = 30.8 bits (68), Expect = 1.5
Identities = 19/67 (28%), Positives = 29/67 (42%), Gaps = 1/67 (1%)
Frame = +3
Query: 259 WTEGETLLLLESVLKHGDDWELVAQSVQTKTKLDCISKLIEL-PFGELMLGSAHRNDNIN 317
WT E L ++ KHG W VA+ V +T C + + L P ML A +
Sbjct: 402 WTTEEDSRLEAAITKHGCCWSKVAEDVTPRTDCQCRKRWMVLHPEQAHMLKEAKKKQRSQ 581
Query: 318 IANGIVN 324
++ V+
Sbjct: 582 LSRNFVD 602
>BQ144891 similar to GP|15528629|dbj hypothetical protein {Oryza sativa
(japonica cultivar-group)}, partial (2%)
Length = 166
Score = 30.4 bits (67), Expect = 1.9
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +1
Query: 116 EAEKEEEREDEEEGEGERCKVRVEEGAP 143
E E+E ERE E E E ER + R EG P
Sbjct: 79 EREREREREREREREREREREREREGGP 162
>TC85286 similar to GP|3776572|gb|AAC64889.1| ESTs gb|R65052 gb|AA712146
gb|H76533 gb|H76282 gb|AA650771 gb|H76287
gb|AA650887 gb|N37383, partial (77%)
Length = 1947
Score = 30.4 bits (67), Expect = 1.9
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = -2
Query: 116 EAEKEEEREDEEEGEGERCKVRVEEGAP 143
E E+E ERE E E E ER + R EG P
Sbjct: 767 EREREREREREREREREREREREREGGP 684
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.311 0.130 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,470,740
Number of Sequences: 36976
Number of extensions: 204544
Number of successful extensions: 2606
Number of sequences better than 10.0: 93
Number of HSP's better than 10.0 without gapping: 1632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2395
length of query: 565
length of database: 9,014,727
effective HSP length: 101
effective length of query: 464
effective length of database: 5,280,151
effective search space: 2449990064
effective search space used: 2449990064
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0063.10