BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0062.3
(108 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AW257355 similar to GP|22022579|gb| AT3g05090/T12H1_5 {Arabidops... 144 7e-36
TC78016 similar to GP|21537191|gb|AAM61532.1 PRL1 protein {Arabi... 59 2e-10
TC84162 similar to GP|15810485|gb|AAL07130.1 putative WD40-repea... 59 3e-10
TC88481 similar to PIR|T00806|T02445 probable U4/U6 small nuclea... 55 4e-09
TC85659 SP|O24076|GBLP_MEDSA Guanine nucleotide-binding protein ... 54 1e-08
TC78188 similar to PIR|C84870|C84870 probable splicing factor [i... 50 1e-07
TC78145 similar to GP|15294240|gb|AAK95297.1 AT3g18860/MCB22_3 {... 50 2e-07
BE322492 GP|13991907|g receptor for activated protein kinase C R... 49 4e-07
TC88475 similar to GP|20260442|gb|AAM13119.1 unknown protein {Ar... 49 4e-07
BF004489 similar to GP|20161344|d contains ESTs AU086067(S4642) ... 47 9e-07
TC77248 similar to GP|13489182|gb|AAK27816.1 putative WD-repeat ... 46 2e-06
TC80645 similar to PIR|T50983|T50983 probable pleiotropic regula... 46 3e-06
TC82910 similar to GP|19347844|gb|AAL86002.1 unknown protein {Ar... 45 4e-06
TC78679 similar to GP|20466538|gb|AAM20586.1 putative WD-repeat ... 45 6e-06
BF643992 similar to GP|21539573|gb WD40-repeat protein {Arabidop... 44 1e-05
TC82717 weakly similar to GP|21539583|gb|AAM53344.1 putative coa... 44 1e-05
TC79118 similar to GP|16323188|gb|AAL15328.1 AT5g67320/K8K14_4 {... 44 1e-05
TC80911 similar to GP|3668118|emb|CAA11819.1 hypothetical protei... 43 2e-05
BG457241 homologue to PIR|F84600|F8 coatomer alpha subunit [impo... 43 2e-05
AW773705 weakly similar to GP|5679840|emb l1332.4 {Oryza sativa}... 43 2e-05
>AW257355 similar to GP|22022579|gb| AT3g05090/T12H1_5 {Arabidopsis
thaliana}, partial (11%)
Length = 264
Score = 144 bits (362), Expect = 7e-36
Identities = 67/79 (84%), Positives = 73/79 (91%)
Frame = +1
Query: 23 RSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDLGQQRCLHSYAVHTDSVWA 82
RSGSK +KLKGHTDN RALLLDSTGR+CLSGSS SMIRLWD+GQQRC+HSYAVHTDSVWA
Sbjct: 4 RSGSKILKLKGHTDNFRALLLDSTGRYCLSGSSYSMIRLWDIGQQRCVHSYAVHTDSVWA 183
Query: 83 LASTSTFSHVYSGGRDFSV 101
LAST T+ HVYSGG DFS+
Sbjct: 184 LASTPTYIHVYSGGTDFSL 240
>TC78016 similar to GP|21537191|gb|AAM61532.1 PRL1 protein {Arabidopsis
thaliana}, partial (81%)
Length = 1759
Score = 59.3 bits (142), Expect = 2e-10
Identities = 25/95 (26%), Positives = 45/95 (47%)
Frame = +1
Query: 1 MNEGGTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIR 60
++ T +G ++ +++WD SG + L GH + +R L + + S D ++
Sbjct: 610 VDPSNTWFATGSADRTIKIWDLASGVLKLTLTGHIEQVRGLAISHKHTYMFSAGDDKQVK 789
Query: 61 LWDLGQQRCLHSYAVHTDSVWALASTSTFSHVYSG 95
WDL Q + + SY H V+ LA T + +G
Sbjct: 790 CWDLEQNKVIRSYHGHLSGVYCLAIHPTIDILLTG 894
Score = 42.7 bits (99), Expect = 2e-05
Identities = 22/66 (33%), Positives = 35/66 (52%)
Frame = +3
Query: 19 VWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDLGQQRCLHSYAVHTD 78
VWD RS + L GH + + ++ T ++GS DS I++WDL + + + H
Sbjct: 918 VWDIRSKMQIHALSGHENTVCSVFTRPTDPQVVTGSHDSTIKMWDLRYGKTMSTLTNHKK 1097
Query: 79 SVWALA 84
SV A+A
Sbjct: 1098SVRAMA 1115
Score = 39.3 bits (90), Expect = 2e-04
Identities = 19/71 (26%), Positives = 37/71 (51%)
Frame = +1
Query: 31 LKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDLGQQRCLHSYAVHTDSVWALASTSTFS 90
+ GH +R++ +D + + +GS+D I++WDL + H + V LA + +
Sbjct: 574 ISGHLGWVRSVAVDPSNTWFATGSADRTIKIWDLASGVLKLTLTGHIEQVRGLAISHKHT 753
Query: 91 HVYSGGRDFSV 101
+++S G D V
Sbjct: 754 YMFSAGDDKQV 786
>TC84162 similar to GP|15810485|gb|AAL07130.1 putative WD40-repeat protein
{Arabidopsis thaliana}, partial (29%)
Length = 628
Score = 58.9 bits (141), Expect = 3e-10
Identities = 28/95 (29%), Positives = 48/95 (50%)
Frame = +1
Query: 8 LVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDLGQQ 67
+V+ +K +R+W GS +GHT ++ L + G +S +D +++LW +
Sbjct: 157 VVTASGDKTIRIWAISDGSCLKTFEGHTSSVLRALFVTRGTQIVSCGADGLVKLWTVKSN 336
Query: 68 RCLHSYAVHTDSVWALASTSTFSHVYSGGRDFSVS 102
C+ +Y H D VWALA + +GG D V+
Sbjct: 337 ECVATYDNHEDKVWALAVGRKTETLATGGSDAVVN 441
Score = 41.6 bits (96), Expect = 5e-05
Identities = 23/93 (24%), Positives = 40/93 (42%)
Frame = +1
Query: 6 TLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDLG 65
+L+ SG ++ VW + KGH I ++ + ++ S D IR+W +
Sbjct: 25 SLVCSGSQDRTACVWRLPDLVSVVVFKGHKRGIWSVEFSPVDQCVVTASGDKTIRIWAIS 204
Query: 66 QQRCLHSYAVHTDSVWALASTSTFSHVYSGGRD 98
CL ++ HT SV + + + S G D
Sbjct: 205 DGSCLKTFEGHTSSVLRALFVTRGTQIVSCGAD 303
Score = 37.7 bits (86), Expect = 7e-04
Identities = 17/58 (29%), Positives = 29/58 (49%)
Frame = +1
Query: 5 GTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLW 62
GT +VS G + +V++W +S H D + AL + +G SD+++ LW
Sbjct: 274 GTQIVSCGADGLVKLWTVKSNECVATYDNHEDKVWALAVGRKTETLATGGSDAVVNLW 447
>TC88481 similar to PIR|T00806|T02445 probable U4/U6 small nuclear
ribonucleoprotein [imported] - Arabidopsis thaliana,
partial (60%)
Length = 1836
Score = 55.1 bits (131), Expect = 4e-09
Identities = 23/76 (30%), Positives = 42/76 (55%)
Frame = +1
Query: 5 GTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDL 64
G+L S G + + RVWD R+G + L+GH +I + G +G D+ R+WDL
Sbjct: 1363 GSLAASCGLDALARVWDLRTGRSVLALEGHVKSILGISFSPNGYHLATGGEDNTCRIWDL 1542
Query: 65 GQQRCLHSYAVHTDSV 80
+++ L++ H++ +
Sbjct: 1543 RKKKSLYTIPAHSNLI 1590
Score = 44.7 bits (104), Expect = 6e-06
Identities = 23/94 (24%), Positives = 44/94 (46%)
Frame = +1
Query: 5 GTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDL 64
G L + +K R+WD + + + +GH+ ++ L G S D++ R+WDL
Sbjct: 1237 GKYLGTASYDKTWRLWDVETEEELLLQEGHSRSVYGLDFHHDGSLAASCGLDALARVWDL 1416
Query: 65 GQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRD 98
R + + H S+ ++ + H+ +GG D
Sbjct: 1417 RTGRSVLALEGHVKSILGISFSPNGYHLATGGED 1518
Score = 34.7 bits (78), Expect = 0.006
Identities = 18/76 (23%), Positives = 36/76 (46%)
Frame = +1
Query: 8 LVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDLGQQ 67
L + ++ + W+ + G+ KGH + + + +G++ + S D RLWD+ +
Sbjct: 1123 LATASADRTAKYWNDQ-GALLGTFKGHLERLARIAFHPSGKYLGTASYDKTWRLWDVETE 1299
Query: 68 RCLHSYAVHTDSVWAL 83
L H+ SV+ L
Sbjct: 1300 EELLLQEGHSRSVYGL 1347
Score = 33.1 bits (74), Expect = 0.017
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = +1
Query: 5 GTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLW 62
G LV+ + +VW R L GH + +L + G + ++ S D I+LW
Sbjct: 1618 GYFLVTASYDMTAKVWSSRDFKPVKTLSGHEAKVTSLDVLGDGGYIVTVSHDRTIKLW 1791
Score = 31.6 bits (70), Expect = 0.049
Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = +1
Query: 5 GTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLD-STGRFCLSGSSDSMIRLWD 63
G L +GG + R+WD R + H++ I + + G F ++ S D ++W
Sbjct: 1489 GYHLATGGEDNTCRIWDLRKKKSLYTIPAHSNLISQVKFEPQEGYFLVTASYDMTAKVWS 1668
Query: 64 LGQQRCLHSYAVHTDSVWAL 83
+ + + + H V +L
Sbjct: 1669 SRDFKPVKTLSGHEAKVTSL 1728
>TC85659 SP|O24076|GBLP_MEDSA Guanine nucleotide-binding protein beta
subunit-like protein. [Alfalfa] {Medicago sativa},
complete
Length = 1261
Score = 53.5 bits (127), Expect = 1e-08
Identities = 29/104 (27%), Positives = 51/104 (48%), Gaps = 5/104 (4%)
Frame = +2
Query: 3 EGGTLLVSGGTEKVVRVW-----DPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDS 57
+ ++V+ +K + +W D G +L GH+ ++ ++L S G+F LSGS D
Sbjct: 137 DNSDMIVTASRDKSIILWHLTKEDKTYGVPRRRLTGHSHFVQDVVLSSDGQFALSGSWDG 316
Query: 58 MIRLWDLGQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRDFSV 101
+RLWDL + HT V ++A + + S RD ++
Sbjct: 317 ELRLWDLNAGTSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTI 448
Score = 45.1 bits (105), Expect = 4e-06
Identities = 20/65 (30%), Positives = 34/65 (51%)
Frame = +2
Query: 8 LVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDLGQQ 67
+VS ++ V+VW+ + L GH+ + + + G C SG D +I LWDL +
Sbjct: 557 IVSASWDRTVKVWNLTNCKLRNTLAGHSGYVNTVAVSPDGSLCASGGKDGVILLWDLAEG 736
Query: 68 RCLHS 72
+ L+S
Sbjct: 737 KRLYS 751
Score = 40.8 bits (94), Expect = 8e-05
Identities = 17/63 (26%), Positives = 33/63 (51%)
Frame = +2
Query: 1 MNEGGTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIR 60
++ G +SG + +R+WD +G+ + GHT ++ ++ R +S S D I+
Sbjct: 272 LSSDGQFALSGSWDGELRLWDLNAGTSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIK 451
Query: 61 LWD 63
LW+
Sbjct: 452 LWN 460
Score = 37.7 bits (86), Expect = 7e-04
Identities = 20/60 (33%), Positives = 32/60 (53%)
Frame = +2
Query: 5 GTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDL 64
G+L SGG + V+ +WD G + L +I L S R+ L +++S I++WDL
Sbjct: 674 GSLCASGGKDGVILLWDLAEGKRLYSL--DAGSIIHALCFSPNRYWLCAATESSIKIWDL 847
Score = 28.1 bits (61), Expect = 0.55
Identities = 21/95 (22%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Frame = +2
Query: 8 LVSGGTEKVVRVWDPRSGSKTMKLKG--HTDNIRALLLDSTGR--FCLSGSSDSMIRLWD 63
+VS ++ +++W+ K G H+D + + + +S S D +++W+
Sbjct: 419 IVSASRDRTIKLWNTLGECKYTIQDGDAHSDWVSCVRFSPSTLQPTIVSASWDRTVKVWN 598
Query: 64 LGQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRD 98
L + ++ A H+ V +A + S SGG+D
Sbjct: 599 LTNCKLRNTLAGHSGYVNTVAVSPDGSLCASGGKD 703
>TC78188 similar to PIR|C84870|C84870 probable splicing factor [imported] -
Arabidopsis thaliana, partial (95%)
Length = 1436
Score = 50.4 bits (119), Expect = 1e-07
Identities = 23/67 (34%), Positives = 37/67 (54%), Gaps = 4/67 (5%)
Frame = +1
Query: 8 LVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDL--- 64
+ +GG + V++WD R G TM L+GH D I ++ L G + L+ D + +WD+
Sbjct: 739 IYTGGIDNDVKIWDLRKGEVTMTLQGHQDMITSMQLSPDGSYLLTNGMDCKLCIWDMRPY 918
Query: 65 -GQQRCL 70
Q RC+
Sbjct: 919 APQNRCV 939
Score = 41.2 bits (95), Expect = 6e-05
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 1/98 (1%)
Frame = +1
Query: 2 NEGGTLLVSGGTEKVVRVWDPRSGSKT-MKLKGHTDNIRALLLDSTGRFCLSGSSDSMIR 60
N G+++ SG +K + +W+ K M LKGH + + L S G +S S D +R
Sbjct: 340 NPTGSVVASGSHDKEIFLWNVHGDCKNFMVLKGHKNAVLDLHWTSDGTQIISASPDKTLR 519
Query: 61 LWDLGQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRD 98
LWD + + H V + T + G D
Sbjct: 520 LWDTETGKQIKKMVEHLSYVNSCCPTRRGPPLVVSGSD 633
Score = 33.5 bits (75), Expect = 0.013
Identities = 19/95 (20%), Positives = 40/95 (42%)
Frame = +1
Query: 4 GGTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWD 63
G L+VSG + ++WD R D++ + +G D+ +++WD
Sbjct: 604 GPPLVVSGSDDGTAKLWDMRQRGSIQTFPDKYQITAVSFSDASDKI-YTGGIDNDVKIWD 780
Query: 64 LGQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRD 98
L + + H D + ++ + S++ + G D
Sbjct: 781 LRKGEVTMTLQGHQDMITSMQLSPDGSYLLTNGMD 885
Score = 32.0 bits (71), Expect = 0.038
Identities = 16/60 (26%), Positives = 29/60 (47%)
Frame = +1
Query: 5 GTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDL 64
G+ + +G ++++V +WD S KL GH ++ + S SSD I L ++
Sbjct: 1006 GSKVTAGSSDRMVYIWDTTSRRILYKLPGHNGSVNECVFHPNEPIVGSCSSDKQIYLGEI 1185
Score = 30.4 bits (67), Expect = 0.11
Identities = 22/74 (29%), Positives = 32/74 (42%), Gaps = 1/74 (1%)
Frame = +1
Query: 26 SKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDL-GQQRCLHSYAVHTDSVWALA 84
S M L GH + + + TG SGS D I LW++ G + H ++V L
Sbjct: 286 SPIMLLTGHQSAVYTMKFNPTGSVVASGSHDKEIFLWNVHGDCKNFMVLKGHKNAVLDLH 465
Query: 85 STSTFSHVYSGGRD 98
TS + + S D
Sbjct: 466 WTSDGTQIISASPD 507
>TC78145 similar to GP|15294240|gb|AAK95297.1 AT3g18860/MCB22_3 {Arabidopsis
thaliana}, partial (93%)
Length = 2633
Score = 49.7 bits (117), Expect = 2e-07
Identities = 27/81 (33%), Positives = 41/81 (50%)
Frame = +3
Query: 8 LVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDLGQQ 67
+VSGG + +V VWD SG K LKGH + +++D +S S D +R W GQ
Sbjct: 336 VVSGGMDTLVLVWDLNSGEKVQSLKGHQLQVTGIVVDDGD--LVSSSMDCTLRRWRNGQ- 506
Query: 68 RCLHSYAVHTDSVWALASTST 88
C+ ++ H + A+ T
Sbjct: 507 -CIETWEAHKGPIQAVIKLPT 566
>BE322492 GP|13991907|g receptor for activated protein kinase C RACK1
{Heliothis virescens}, partial (39%)
Length = 452
Score = 48.5 bits (114), Expect = 4e-07
Identities = 27/86 (31%), Positives = 43/86 (49%), Gaps = 5/86 (5%)
Frame = +1
Query: 7 LLVSGGTEKVVRVW-----DPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRL 61
+++S +K + VW + G +L GH+ I ++L S G + LSGS D +RL
Sbjct: 136 MILSSSRDKTLIVWKLTRDETNYGVPQKRLYGHSHFISDVVLSSDGNYALSGSWDKTLRL 315
Query: 62 WDLGQQRCLHSYAVHTDSVWALASTS 87
WDL + + HT V ++A S
Sbjct: 316 WDLAAGKTTRRFEDHTKDVLSVAFLS 393
>TC88475 similar to GP|20260442|gb|AAM13119.1 unknown protein {Arabidopsis
thaliana}, partial (96%)
Length = 1315
Score = 48.5 bits (114), Expect = 4e-07
Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Frame = +3
Query: 5 GTLLVSGGTEKVVRVW--DPRSGSKT--MKLKGHTDNIRALLLD-STGRFCLSGSSDSMI 59
GT L SG ++ R+W DP + K ++LKGHTD++ L D + S D +
Sbjct: 237 GTKLASGSVDQTARIWHIDPHAHGKVKDIELKGHTDSVDQLCWDPKHPDLIATASGDKTV 416
Query: 60 RLWDLGQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRDFSVSAVFLKK 108
RLWD +C + +++ + +HV G RD ++ + ++K
Sbjct: 417 RLWDARSGKCSQQAELSGENI-NITYKPDGTHVAVGNRDDELTILDVRK 560
Score = 37.7 bits (86), Expect = 7e-04
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 14/79 (17%)
Frame = +3
Query: 31 LKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDLGQQRCLHSYAV-----------HTDS 79
L HT + +D TGR GS+DS++ LW + + C+ ++ HT
Sbjct: 702 LMAHTAGCYCIAIDPTGRHFAVGSADSLVSLWVISEMLCVRTFTKLEWPVRTISFNHTGD 881
Query: 80 VWALASTSTF---SHVYSG 95
+ A AS F S+V++G
Sbjct: 882 LIASASEDLFIDISNVHTG 938
Score = 29.6 bits (65), Expect = 0.19
Identities = 16/65 (24%), Positives = 32/65 (48%)
Frame = +3
Query: 7 LLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDLGQ 66
L+ + +K VR+WD RSG + + + +NI + G G+ D + + D+ +
Sbjct: 384 LIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHVAVGNRDDELTILDVRK 560
Query: 67 QRCLH 71
+ +H
Sbjct: 561 FKPMH 575
>BF004489 similar to GP|20161344|d contains ESTs AU086067(S4642)
D41819(S4642)~similar to Arabidopsis thaliana chromosome
1 At1g49040~, partial (16%)
Length = 605
Score = 47.4 bits (111), Expect = 9e-07
Identities = 26/92 (28%), Positives = 44/92 (47%)
Frame = +1
Query: 7 LLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDLGQ 66
+L + G + V +WD R+ + KL GHT IR+L + G ++GS D R+W + +
Sbjct: 310 ILAAAGRDVVANMWDIRASRQMHKLSGHTQWIRSLRM--VGDTVITGSDDWTARIWSVSR 483
Query: 67 QRCLHSYAVHTDSVWALASTSTFSHVYSGGRD 98
C A H + + +S + +G D
Sbjct: 484 GTCDAVLACHAGPILCVEYSSLDRGIITGSTD 579
Score = 43.1 bits (100), Expect = 2e-05
Identities = 24/91 (26%), Positives = 45/91 (49%)
Frame = +1
Query: 8 LVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDLGQQ 67
+VSG ++ V VWD ++ +LKGH D + + +G L+ S D +++WD+
Sbjct: 64 VVSGSDDQSVLVWDKQTTQLLEELKGH-DGPVSCVRTLSGERVLTASHDGTVKMWDVRTD 240
Query: 68 RCLHSYAVHTDSVWALASTSTFSHVYSGGRD 98
RC+ + + +V + + + GRD
Sbjct: 241 RCVATVGRCSSAVLCMEYDDNVGILAAAGRD 333
>TC77248 similar to GP|13489182|gb|AAK27816.1 putative WD-repeat containing
protein {Oryza sativa}, partial (92%)
Length = 2005
Score = 46.2 bits (108), Expect = 2e-06
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 3/103 (2%)
Frame = +1
Query: 5 GTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDL 64
G +L +G T+ +V++WD +S + K GH ++ A+ G + + + D ++LWDL
Sbjct: 1183 GLILGTGTTDSLVKIWDVKSQANVAKFDGHVGHVTAISFSENGYYLATAAHDG-VKLWDL 1359
Query: 65 GQQRCLHSYAVHTDSVWALASTS---TFSHVYSGGRDFSVSAV 104
+ + Y + DS S + S++ GG D + V
Sbjct: 1360 RKLKNFRDYGPY-DSATPTNSVEFDHSGSYLAVGGSDVRILQV 1485
Score = 39.3 bits (90), Expect = 2e-04
Identities = 24/97 (24%), Positives = 43/97 (43%), Gaps = 3/97 (3%)
Frame = +1
Query: 7 LLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLW---D 63
L+ +G + ++D SG L GH+ + ++ G ++GS+D +RLW D
Sbjct: 802 LIATGNIDTNAVIFDRPSGQVLATLTGHSKKVTSVKFVGQGESIITGSADKTVRLWQGSD 981
Query: 64 LGQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRDFS 100
G C H+ V A+ +T ++ + D S
Sbjct: 982 DGHYNCKQILKDHSAEVEAVTVHATNNYFVTASLDGS 1092
>TC80645 similar to PIR|T50983|T50983 probable pleiotropic regulator 1
(PLRG1) [imported] - Neurospora crassa, partial (41%)
Length = 1141
Score = 45.8 bits (107), Expect = 3e-06
Identities = 24/68 (35%), Positives = 33/68 (48%)
Frame = +2
Query: 18 RVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDLGQQRCLHSYAVHT 77
RVWD R+ S L GHT + L ++GS D+ +RLWDL + + H
Sbjct: 29 RVWDMRTRSNVHVLSGHTGTVSDLTCQEADPQVITGSLDATVRLWDLAAGKSMGVLTHHK 208
Query: 78 DSVWALAS 85
V ALA+
Sbjct: 209KGVRALAT 232
Score = 35.0 bits (79), Expect = 0.004
Identities = 26/100 (26%), Positives = 46/100 (46%)
Frame = +2
Query: 3 EGGTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLW 62
E +++G + VR+WD +G L H +RAL SGSS S I+ W
Sbjct: 110 EADPQVITGSLDATVRLWDLAAGKSMGVLTHHKKGVRALATHPEEFTFASGSSGS-IKQW 286
Query: 63 DLGQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRDFSVS 102
+ + ++ H + L S + + ++SGG + S++
Sbjct: 287 KCPEGAFMQNFEGHNAIINTL-SVNRDNVLFSGGDNGSMN 403
Score = 28.5 bits (62), Expect = 0.42
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Frame = +2
Query: 7 LLVSGGTEKVVRVWDPRSGSKTMKLK-----GHTD---NIRALLLDSTGRFCLSGSSDSM 58
+L SGG + WD ++G + L+ G D I + D++G + G +D
Sbjct: 368 VLFSGGDNGSMNFWDWKTGHRFQSLETTAQPGSLDAEAGIMSSTFDNSGLRLICGEADKT 547
Query: 59 IRLW 62
I++W
Sbjct: 548 IKIW 559
>TC82910 similar to GP|19347844|gb|AAL86002.1 unknown protein {Arabidopsis
thaliana}, partial (19%)
Length = 821
Score = 45.1 bits (105), Expect = 4e-06
Identities = 19/61 (31%), Positives = 36/61 (58%)
Frame = +1
Query: 4 GGTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWD 63
G + + +G + VR+WD RSG +GH+++I++L L + + +S S D R++D
Sbjct: 319 GTSYVATGSNDGAVRLWDSRSGECVRTFRGHSESIQSLSLSANQEYLVSASLDHTARVFD 498
Query: 64 L 64
+
Sbjct: 499 V 501
>TC78679 similar to GP|20466538|gb|AAM20586.1 putative WD-repeat protein
{Arabidopsis thaliana}, partial (55%)
Length = 1198
Score = 44.7 bits (104), Expect = 6e-06
Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Frame = +1
Query: 5 GTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLL-DSTGRFCLSGSSDSMIRLWD 63
G LV+G + + V+D + ++++ HT ++ + D TG SGS DS ++WD
Sbjct: 220 GKELVAGTSGDSIYVYDLETNKVSLRILAHTADVNTVCFADETGHLIYSGSDDSFCKVWD 399
Query: 64 LGQQRCLHS-------YAVHTDSVWALASTSTFSHVYSGGRDFSVSAVFLKK 108
+RCL++ VH + + + S + S G+D ++ ++K
Sbjct: 400 ---RRCLNAKDKPAGVLMVHLEGITFIDSRGDGRYFISNGKDQTIKLWDIRK 546
>BF643992 similar to GP|21539573|gb WD40-repeat protein {Arabidopsis
thaliana}, partial (14%)
Length = 424
Score = 43.9 bits (102), Expect = 1e-05
Identities = 24/98 (24%), Positives = 48/98 (48%)
Frame = +3
Query: 1 MNEGGTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIR 60
++ G+ +V ++ + ++ D + S L+G ++ + AL+L + S S IR
Sbjct: 129 VSSDGSFIVCACSDSI-KIVDSANASIKSTLEGDSEQVTALVLGPDDKLLFSASHSRQIR 305
Query: 61 LWDLGQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRD 98
+WDL +C+ S+ H V +A + + +GG D
Sbjct: 306 VWDLETLKCVRSWKGHEGPVMCMAVDPSGGLLATGGAD 419
>TC82717 weakly similar to GP|21539583|gb|AAM53344.1 putative coatomer
complex subunit {Arabidopsis thaliana}, partial (29%)
Length = 1118
Score = 43.9 bits (102), Expect = 1e-05
Identities = 20/76 (26%), Positives = 38/76 (49%)
Frame = +1
Query: 8 LVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDLGQQ 67
L+SG + +VWD S + L+GH +N+ A+ ++ S DS +++WD
Sbjct: 694 LLSGSDDYTAKVWDYDSKNCVQTLEGHKNNVTAICAHPEIPIIITASEDSTVKIWDAVTY 873
Query: 68 RCLHSYAVHTDSVWAL 83
R ++ + VW++
Sbjct: 874 RLQNTLDFGLERVWSI 921
Score = 37.0 bits (84), Expect = 0.001
Identities = 18/94 (19%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Frame = +1
Query: 10 SGGTEKVVRVWDPRSGSKTMKLKGHTDNIRAL--LLDSTGRFCLSGSSDSMIRLWDLGQQ 67
S + +++W S + +GH + + + ++ LSGS D ++WD +
Sbjct: 568 SASLDGTLKIWTIDSSAPNFTFEGHLKGMNCVDYFESNDKQYLLSGSDDYTAKVWDYDSK 747
Query: 68 RCLHSYAVHTDSVWALASTSTFSHVYSGGRDFSV 101
C+ + H ++V A+ + + + D +V
Sbjct: 748 NCVQTLEGHKNNVTAICAHPEIPIIITASEDSTV 849
>TC79118 similar to GP|16323188|gb|AAL15328.1 AT5g67320/K8K14_4 {Arabidopsis
thaliana}, partial (44%)
Length = 1098
Score = 43.5 bits (101), Expect = 1e-05
Identities = 28/113 (24%), Positives = 48/113 (41%), Gaps = 9/113 (7%)
Frame = +2
Query: 5 GTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGR---------FCLSGSS 55
GTLL S + ++W + + H+ I + TG S S
Sbjct: 353 GTLLASCSDDITAKIWSVKQDKYLHDFREHSKEIYTIRWSPTGPGTNNPNKKLLLASASF 532
Query: 56 DSMIRLWDLGQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRDFSVSAVFLKK 108
DS ++LWD+ + +HS H V+++A + ++ SG D S+ LK+
Sbjct: 533 DSTVKLWDIELGKLIHSLNGHRHPVYSVAFSPNGEYIASGSLDKSLHIWSLKE 691
Score = 42.7 bits (99), Expect = 2e-05
Identities = 18/67 (26%), Positives = 31/67 (45%)
Frame = +2
Query: 7 LLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDLGQ 66
LL S + V++WD G L GH + ++ G + SGS D + +W L +
Sbjct: 512 LLASASFDSTVKLWDIELGKLIHSLNGHRHPVYSVAFSPNGEYIASGSLDKSLHIWSLKE 691
Query: 67 QRCLHSY 73
+ + +Y
Sbjct: 692 GKIIRTY 712
Score = 40.0 bits (92), Expect = 1e-04
Identities = 19/83 (22%), Positives = 34/83 (40%)
Frame = +2
Query: 6 TLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDLG 65
T S T+ ++ V T GH + + D TG S S D ++W +
Sbjct: 230 TSFASSSTDNMIYVCKIGENHPTQTFAGHQGEVNCVKWDPTGTLLASCSDDITAKIWSVK 409
Query: 66 QQRCLHSYAVHTDSVWALASTST 88
Q + LH + H+ ++ + + T
Sbjct: 410 QDKYLHDFREHSKEIYTIRWSPT 478
>TC80911 similar to GP|3668118|emb|CAA11819.1 hypothetical protein {Brassica
napus}, partial (22%)
Length = 860
Score = 43.1 bits (100), Expect = 2e-05
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Frame = +2
Query: 7 LLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDLG- 65
+L +GG + D R S +GHTD + L G+ SG SD+++ +WD
Sbjct: 575 ILTTGGMNGKIVNNDVRVRSHINSYRGHTDEVCGLKWSLDGKKLASGGSDNVVHIWDRSA 754
Query: 66 ------QQRCLHSYAVHTDSVWALA 84
R LH + HT +V ALA
Sbjct: 755 VSSSSRTTRWLHKFEEHTAAVKALA 829
Score = 34.3 bits (77), Expect = 0.008
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Frame = +2
Query: 5 GTLLVSGGTEKVVRVWDPRSGSKTMKLK-GHTDNIRALLLDSTGRFCLSGSSDSMIRLWD 63
G+ L G +V+VWD + + LK GH + +L +++ G + ++ D
Sbjct: 443 GSRLAIGLDSSLVQVWDTIANKQLTTLKSGHRAGVSSLAWNNSHILTTGGMNGKIVNN-D 619
Query: 64 LGQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRD 98
+ + ++SY HTD V L + + SGG D
Sbjct: 620 VRVRSHINSYRGHTDEVCGLKWSLDGKKLASGGSD 724
Score = 28.5 bits (62), Expect = 0.42
Identities = 17/44 (38%), Positives = 24/44 (53%), Gaps = 7/44 (15%)
Frame = +2
Query: 5 GTLLVSGGTEKVVRVWD---PRSGSKTM----KLKGHTDNIRAL 41
G L SGG++ VV +WD S S+T K + HT ++AL
Sbjct: 695 GKKLASGGSDNVVHIWDRSAVSSSSRTTRWLHKFEEHTAAVKAL 826
>BG457241 homologue to PIR|F84600|F8 coatomer alpha subunit [imported] -
Arabidopsis thaliana, partial (15%)
Length = 654
Score = 42.7 bits (99), Expect = 2e-05
Identities = 22/74 (29%), Positives = 34/74 (45%)
Frame = +1
Query: 7 LLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDLGQ 66
L VSGG + ++VW+ + L GH D IR + + +S S D IR+W+
Sbjct: 265 LFVSGGDDYKIKVWNYKLHRCLFTLLGHLDYIRTVQFHHESPWIVSASDDQTIRIWNWQS 444
Query: 67 QRCLHSYAVHTDSV 80
+ C+ H V
Sbjct: 445 RTCISVLTGHNHYV 486
Score = 39.3 bits (90), Expect = 2e-04
Identities = 18/65 (27%), Positives = 32/65 (48%)
Frame = +1
Query: 16 VVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDLGQQRCLHSYAV 75
V+++WD R G+ K H +R + ++ +SG D I++W+ RCL +
Sbjct: 166 VIQLWDYRMGTLIDKFDEHDGPVRGVHFHNSQPLFVSGGDDYKIKVWNYKLHRCLFTLLG 345
Query: 76 HTDSV 80
H D +
Sbjct: 346 HLDYI 360
Score = 38.1 bits (87), Expect = 5e-04
Identities = 20/81 (24%), Positives = 36/81 (43%)
Frame = +1
Query: 8 LVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDLGQQ 67
+VS ++ +R+W+ +S + L GH + L +S S D +R+WD+G
Sbjct: 394 IVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCALFHPKDDLVVSASLDQTVRVWDIGSL 573
Query: 68 RCLHSYAVHTDSVWALASTST 88
+ A D + L +T
Sbjct: 574 K--RKSASXADDILRLGQMNT 630
>AW773705 weakly similar to GP|5679840|emb l1332.4 {Oryza sativa}, partial
(29%)
Length = 557
Score = 42.7 bits (99), Expect = 2e-05
Identities = 28/95 (29%), Positives = 43/95 (44%), Gaps = 13/95 (13%)
Frame = +3
Query: 7 LLVSGGTEKVVRVW-------------DPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSG 53
LLV+GGT+ + W + + ++L GH + +L LD T + SG
Sbjct: 111 LLVAGGTDGFIHCWRAVEGLPHLFELRNSQQNKNEVRLWGHDGPVTSLALDLTRIY--SG 284
Query: 54 SSDSMIRLWDLGQQRCLHSYAVHTDSVWALASTST 88
S D+ +R+WD +C H+D VW L T
Sbjct: 285 SWDTTVRVWDRHSMKCT-VVLRHSDWVWGLVPHDT 386
Score = 39.7 bits (91), Expect = 2e-04
Identities = 29/97 (29%), Positives = 45/97 (45%), Gaps = 1/97 (1%)
Frame = +3
Query: 6 TLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDLG 65
T + SG + VRVWD S T+ L+ H+D + L+ T SGS+ + +WD
Sbjct: 267 TRIYSGSWDTTVRVWDRHSMKCTVVLR-HSDWVWGLVPHDTTVVSTSGSN---VYVWDTN 434
Query: 66 QQRCLHSYA-VHTDSVWALASTSTFSHVYSGGRDFSV 101
H + +ALA T +++GG D S+
Sbjct: 435 SGNLATVVLNAHVGNTYALARGHTGDFIFTGGEDGSI 545
Score = 30.8 bits (68), Expect = 0.084
Identities = 17/51 (33%), Positives = 25/51 (48%)
Frame = +3
Query: 12 GTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLW 62
G + VVR+W+ SG K IRA+ D+ R ++G +D I W
Sbjct: 6 GYDTVVRMWNMESGLSVASSKPLGCTIRAVAADT--RLLVAGGTDGFIHCW 152
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.319 0.132 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,664,474
Number of Sequences: 36976
Number of extensions: 49729
Number of successful extensions: 437
Number of sequences better than 10.0: 145
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of query: 108
length of database: 9,014,727
effective HSP length: 84
effective length of query: 24
effective length of database: 5,908,743
effective search space: 141809832
effective search space used: 141809832
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)
Lotus: description of TM0062.3