TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0060.3
         (388 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC79517 similar to PIR|T08874|T08874 calcium-dependent protein k...    32  0.42
BF649736                                                               31  0.93
BQ137231                                                               28  4.6
AW584268 similar to GP|4678586|emb GA 2-oxidase {Phaseolus cocci...    28  6.0
TC85580 similar to GP|13272443|gb|AAK17160.1 unknown protein {Ar...    28  7.9

>TC79517 similar to PIR|T08874|T08874 calcium-dependent protein kinase (EC
           2.7.1.-) gamma - soybean, partial (80%)
          Length = 1930

 Score = 32.0 bits (71), Expect = 0.42
 Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
 Frame = +3

Query: 276 YASPQPLAAHFPPEVEEKLVGAEVLFKVRNDVRRLYD-----GCFCYDVLHICSDSETMD 330
           Y SP   A   P  + ++     +L K   DV+++Y      G   + V ++C+++ T  
Sbjct: 528 YQSPNKHAPRSPKPIVQRPNTNAILGKQFEDVKQIYTLGKELGRGQFGVTYLCTENSTGL 707

Query: 331 KFSAKRTSVTLVESKSDSRVTYLEEDNKQAVCVVE 365
           K++ K  S   + SKSD      +ED K+ + +++
Sbjct: 708 KYACKSISKRKLVSKSD------KEDIKREIQIMQ 794


>BF649736 
          Length = 274

 Score = 30.8 bits (68), Expect = 0.93
 Identities = 11/38 (28%), Positives = 23/38 (59%)
 Frame = +3

Query: 21  WTIKVRVICLWKTPEEMLESSHSSLKMILIDREAVKIE 58
           W I+VRV+ LW     ++      ++M+L+D++  +I+
Sbjct: 159 WNIRVRVVRLWXIMSSLVRGXVIFMEMVLLDQDGNRIQ 272


>BQ137231 
          Length = 949

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
 Frame = -1

Query: 42  HSSLKMILIDREAVKIEAYVCKEDPITKNIVPG----GVYKFSIFQVTCNHGVNRVTNHR 97
           H+    +L+    + I+ Y       T+NI+      G+YK  +    C H V R   HR
Sbjct: 544 HTISTAVLVTSTNIYIQVY-------TRNILRSNERVGIYKIPVSHDRCKHDVVRALEHR 386

Query: 98  YKLL 101
            +L+
Sbjct: 385 RRLI 374


>AW584268 similar to GP|4678586|emb GA 2-oxidase {Phaseolus coccineus},
           partial (41%)
          Length = 619

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +3

Query: 258 LSDPEATHIIKKACEEFAY 276
           L+DPEA  +I KAC+EF +
Sbjct: 237 LADPEAKTLIVKACKEFGF 293


>TC85580 similar to GP|13272443|gb|AAK17160.1 unknown protein {Arabidopsis
            thaliana}, partial (87%)
          Length = 1548

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
 Frame = -2

Query: 158  YRDSEFNLQDDFIHLHPAK-----TLLQLIHTEQRGVFIVQARIVSVIKAAGWAYPSCRC 212
            +R S+  LQ   + L P+       +L  IH  +   FI+        K     YP    
Sbjct: 1262 FRSSQIKLQKIILQLIPSNHN*SPCILTTIHKSKTQNFIIYTHH*ICTK-----YPPNHI 1098

Query: 213  YSELKVVNHGYSCSRCCRTMIMIFYFYR 240
            +   K +N  +SC++ C + I +  F R
Sbjct: 1097 FILQKELNSRHSCTQSCPSQISVTKFKR 1014


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.322    0.137    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,054,383
Number of Sequences: 36976
Number of extensions: 216649
Number of successful extensions: 1300
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1300
length of query: 388
length of database: 9,014,727
effective HSP length: 98
effective length of query: 290
effective length of database: 5,391,079
effective search space: 1563412910
effective search space used: 1563412910
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)