TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0060.14
         (651 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC83437 weakly similar to PIR|D86384|D86384 unknown protein [imp...   195  5e-50
BG586266 similar to GP|7267666|em RNA-directed DNA polymerase-li...   157  2e-38
BF650289 weakly similar to GP|9049283|dbj| orf129a {Beta vulgari...   142  5e-34
BE248682 similar to GP|18568269|gb putative gag-pol polyprotein ...   134  8e-32
BG586267 weakly similar to PIR|A84888|A8 hypothetical protein At...    78  2e-23
TC90516                                                               100  1e-21
BG447966 weakly similar to PIR|G96509|G96 protein F27F5.21 [impo...    98  1e-20
BG587108 similar to PIR|G96509|G9 protein F27F5.21 [imported] - ...    65  4e-19
TC81386 similar to GP|10140689|gb|AAG13524.1 putative non-LTR re...    70  3e-12
BQ148771                                                               68  1e-11
BG647708 weakly similar to GP|13786450|gb| putative reverse tran...    65  6e-11
CB893203                                                               64  2e-10
AW736247 weakly similar to PIR|T14619|T146 reverse transcriptase...    58  1e-08
BF647389                                                               53  4e-07
TC91765 weakly similar to GP|19881779|gb|AAM01180.1 Putative ret...    40  2e-06
TC77455 similar to GP|22335695|dbj|BAC10549. nine-cis-epoxycarot...    46  4e-05
CB891696                                                               46  5e-05
BF006686                                                               40  0.004
TC80819 weakly similar to GP|10140689|gb|AAG13524.1 putative non...    39  0.006
TC83624 homologue to PIR|G84581|G84581 copia-like retroelement p...    39  0.006

>TC83437 weakly similar to PIR|D86384|D86384 unknown protein [imported] -
           Arabidopsis thaliana, partial (6%)
          Length = 951

 Score =  195 bits (495), Expect = 5e-50
 Identities = 122/333 (36%), Positives = 177/333 (52%), Gaps = 1/333 (0%)
 Frame = +2

Query: 238 VREFWRRGAWSRGCNASFIVLIPKVNSPQPLNEFRPISLIGCIYKVISKLLATRLSTVVG 297
           V EF R     +G N++FI LIPKV++PQ LN+FRPISL+G +YK++ KLLA RL  V+G
Sbjct: 11  VSEFHRNRKLFKGINSTFIALIPKVDNPQRLNDFRPISLVGSLYKILGKLLANRLRVVIG 190

Query: 298 KVIDERQFAFVGNRNMLDSVVVLNEVIHEVKRKKQPSIIFKVDYEKAYDTVDWSFLEYMM 357
            VI + Q AFV NR +L+ V +    +    R  +          K   T+    +  + 
Sbjct: 191 SVISDAQSAFVKNRQILEMVFL*QMRLWMRLRN*RKIFCCLRWILKRLITLSIGLIWILF 370

Query: 358 -GRMNFCSKWISWIMGCLRSASVSVLVNGSPTGEFKMERGLRQGDPLAPFLFLFVAEGLN 416
              M+F   W  WI  C+ +A+ SVLVNGSPT                           N
Sbjct: 371 *VGMSFLVLWRKWIKECVSTATTSVLVNGSPT---------------------------N 469

Query: 417 GLFQNSVRLSKFKGVKVGADTGLEVSLLQFADDTVFLGEATIQNLVSLKCILRCFELVSG 476
            L ++ V+   F     G    + VS LQFA+DT+ L      N+ +L+  L  F  +SG
Sbjct: 470 VLMKSLVQTQLFTRYSFGVVNPVVVSHLQFANDTLLLETKNWANIRALRAALVIF*AMSG 649

Query: 477 LKVNFHKSKLAAIAIETGVAHQFASFLNCKVMTIPFVYLGIPVGARASCLKTWEPVIKKM 536
           LKVNFHKS L  + I      + AS L+ KV  +PF+YLG+P+   +  L  WEP++ ++
Sbjct: 650 LKVNFHKSGLVCVNIAPSWLSEAASVLSWKVGKVPFLYLGMPIEGNSRRLSFWEPIVNRI 829

Query: 537 RNRLALWKQKLISFGGRICLIQSVLSALPLIFL 569
           + RL  W  + +SFGGR+ L++SVL++L +  L
Sbjct: 830 KARLTGWNSRFLSFGGRLVLLKSVLTSLSVYAL 928


>BG586266 similar to GP|7267666|em RNA-directed DNA polymerase-like protein
           {Arabidopsis thaliana}, partial (18%)
          Length = 789

 Score =  157 bits (396), Expect = 2e-38
 Identities = 83/222 (37%), Positives = 132/222 (59%), Gaps = 3/222 (1%)
 Frame = -3

Query: 268 LNEFRPISLIGCIYKVISKLLATRLSTVVGKVIDERQFAFVGNRNMLDSVVVLNEVIHEV 327
           ++E+R I+     YK+I+K+L+ R+  ++  +I   Q AFV  R + D+V++ ++++H +
Sbjct: 778 VSEYRTIAPCNTQYKIIAKILSKRMQPLLRSIISPSQSAFVPGRAISDNVLITHKILHYL 599

Query: 328 KR---KKQPSIIFKVDYEKAYDTVDWSFLEYMMGRMNFCSKWISWIMGCLRSASVSVLVN 384
           ++   KK  S+  K D  KAYD + W+FL  ++ R+ F   WISWIM C+ + S S L+N
Sbjct: 598 RQSGAKKHVSMAVKTDMTKAYDRIAWNFLREVLTRLGFHGIWISWIMECVSTVSYSFLIN 419

Query: 385 GSPTGEFKMERGLRQGDPLAPFLFLFVAEGLNGLFQNSVRLSKFKGVKVGADTGLEVSLL 444
           G P G     RGLRQGDPL+P+LF+   E L+GL Q ++R     GVKV  +    ++ L
Sbjct: 418 GGPQGRVLPSRGLRQGDPLSPYLFILCTEVLSGLCQQALRKGTLPGVKVARNCP-PINHL 242

Query: 445 QFADDTVFLGEATIQNLVSLKCILRCFELVSGLKVNFHKSKL 486
            FADDT+F G++   +   L  I+  +   SG  +N  KS +
Sbjct: 241 LFADDTMFFGKSNASSCAILLSIMDKYRAASGRCIN*TKSAI 116


>BF650289 weakly similar to GP|9049283|dbj| orf129a {Beta vulgaris}, partial
           (69%)
          Length = 616

 Score =  142 bits (357), Expect = 5e-34
 Identities = 67/200 (33%), Positives = 120/200 (59%), Gaps = 1/200 (0%)
 Frame = +3

Query: 190 VLIGPMDEVEIKDAVWACGGNKSPGPDGFNFRFIKQFWDVLKGDVIKAVREFWRRGAWSR 249
           +L      VE+K+A+++   +K+PG DG+N  F K  W+++   VI A+ +F++ G   +
Sbjct: 9   LLCSEFTAVEVKNALFSMDSSKAPGIDGYNVHFFKCSWNIIGDSVIDAILDFFKTGFMPK 188

Query: 250 GCNASFIVLIPKVNSPQPLNEFRPISLIGCIYKVISKLLATRLSTVVGKVIDERQFAFVG 309
             N +++ L+PK  +   +  FRPI+    IYK+ISK+L +R+  V+  V+ E Q AFV 
Sbjct: 189 IINCTYVTLLPKEVNVTSVKNFRPIACCSVIYKIISKILTSRMQGVLNSVVSENQSAFVK 368

Query: 310 NRNMLDSVVVLNEVIHEVKRKK-QPSIIFKVDYEKAYDTVDWSFLEYMMGRMNFCSKWIS 368
            R + D++++ +E++    RK   P  + K+D  KAYD+ +W F++++M  + F  K+++
Sbjct: 369 GRVIFDNIILSHELVKSYSRKGISPRCMVKIDLXKAYDSXEWPFIKHLMLELGFPYKFVN 548

Query: 369 WIMGCLRSASVSVLVNGSPT 388
           W+M  L +AS +   NG  T
Sbjct: 549 WVMAXLTTASYTFNXNGDLT 608


>BE248682 similar to GP|18568269|gb putative gag-pol polyprotein {Zea mays},
           partial (1%)
          Length = 441

 Score =  134 bits (338), Expect = 8e-32
 Identities = 68/132 (51%), Positives = 91/132 (68%)
 Frame = +3

Query: 390 EFKMERGLRQGDPLAPFLFLFVAEGLNGLFQNSVRLSKFKGVKVGADTGLEVSLLQFADD 449
           E  ++RGL+QGDPLAPFLFL VAEG++GL +N+V  + F+G  V    G  VS LQ+ADD
Sbjct: 9   EISVQRGLKQGDPLAPFLFLLVAEGISGLMKNAVNRNLFQGFDVKRG-GTRVSHLQYADD 185

Query: 450 TVFLGEATIQNLVSLKCILRCFELVSGLKVNFHKSKLAAIAIETGVAHQFASFLNCKVMT 509
           T+ +G  T+ NL +LK +L+ FE+ SGLKVNFHKS L  I +          FLNC+  +
Sbjct: 186 TLCIGMPTVDNLWTLKALLQGFEMASGLKVNFHKSSLIGINVPRDFMEAACRFLNCREES 365

Query: 510 IPFVYLGIPVGA 521
           IPF+YLG+P G+
Sbjct: 366 IPFIYLGLPGGS 401


>BG586267 weakly similar to PIR|A84888|A8 hypothetical protein At2g45230
           [imported] - Arabidopsis thaliana, partial (16%)
          Length = 794

 Score = 78.2 bits (191), Expect(2) = 2e-23
 Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 10/167 (5%)
 Frame = +3

Query: 100 HHESLL-CQKARSRWLAEGDQNSGFFHSTINWKRRTNSIVGLW----VEGVWEEDPSRVK 154
           H+E +   QK+R  WL  GD+N+ FFH+    +R  N I+ L      E   EED  R+ 
Sbjct: 117 HNEEIFWMQKSRLNWLRSGDRNTKFFHAVTKNRRAQNRILSLIDDDDKEWFVEEDLGRL- 293

Query: 155 AAVESFFEAKFKSD-----V*DRPRLEGVPFKTLSDSDNSVLIGPMDEVEIKDAVWACGG 209
              +S F+  + S+     + D   +  +    +++  N+ L+  +   E+++AV+    
Sbjct: 294 --ADSHFKLLYSSEDVGITLEDWNSIPAI----VTEEQNAQLMAQISREEVREAVFDINP 455

Query: 210 NKSPGPDGFNFRFIKQFWDVLKGDVIKAVREFWRRGAWSRGCNASFI 256
           +K PGPDG N  F +QFWD +  D+    +EF R G    G N + I
Sbjct: 456 HKCPGPDGMNVFFFQQFWDTMGDDLTSMAQEFLRTGKLEEGINKTNI 596



 Score = 49.3 bits (116), Expect(2) = 2e-23
 Identities = 25/62 (40%), Positives = 40/62 (64%)
 Frame = +1

Query: 258 LIPKVNSPQPLNEFRPISLIGCIYKVISKLLATRLSTVVGKVIDERQFAFVGNRNMLDSV 317
           L+PK    + L EFRPISL    YK++SK+L+ RL +V+  +I E Q AF   + + D++
Sbjct: 601 LVPKKLEAKRLVEFRPISLCNVAYKIVSKVLSKRLKSVLPWIITETQAAFGRRQLISDNI 780

Query: 318 VV 319
           ++
Sbjct: 781 LI 786


>TC90516 
          Length = 983

 Score =  100 bits (250), Expect = 1e-21
 Identities = 86/307 (28%), Positives = 142/307 (46%), Gaps = 9/307 (2%)
 Frame = -2

Query: 104 LLCQKARSRWLAEGDQNSG---------FFHSTINWKRRTNSIVGLWVEGVWEEDPSRVK 154
           L C ++++R  + G + SG         +F + +  +   NSI    VE  W +D ++ K
Sbjct: 814 LFC-RSKTRRCSNGQEQSG*EREGHNTTYFLACVKNRGMRNSISAPRVER-WMDDVAKNK 641

Query: 155 AAVESFFEAKFKSDV*DRPRLEGVPFKTLSDSDNSVLIGPMDEVEIKDAVWACGGNKSPG 214
            A+ +FF   F      RP +  + F  +S+ DN +L       +++  V +  GN+SP 
Sbjct: 640 QAIVNFFTHHFSDP*TYRPTMGDIDFFHISNLDNVLLSAQFLVSKMELVVSSLDGNESPR 461

Query: 215 PDGFNFRFIKQFWDVLKGDVIKAVREFWRRGAWSRGCNASFIVLIPKVNSPQPLNEFRPI 274
           PDGFN  F  +  ++LK D+     +F+      +  +  F+ LI KV  P  L +F  +
Sbjct: 460 PDGFNLNFFIRLRNMLKADIEIMFEQFYTPANLLKIFS*YFLTLISKVEYPILLGDFSLM 281

Query: 275 SLIGCIYKVISKLLATRLSTVVGKVIDERQFAFVGNRNMLDSVVVLNEVIHEVKRKKQPS 334
           S +G + K+++K+LA RL+ ++ K+I   Q  FV  R  +D VV +NE+           
Sbjct: 280 SFLGSL*KLMAKVLALRLAHIMEKIIFVNQSTFVRGRQHVDGVVAINEI----------- 134

Query: 335 IIFKVDYEKAYDTVDWSFLEYMMGRMNFCSKWISWIMGCLRSASVSVLVNGSPTGEFKME 394
           I+   D       VD S   Y                        ++LVN SPT E  ++
Sbjct: 133 IVLMGD-----GVVD*SVCVY---------------------K*PAILVNCSPT*EIDIQ 32

Query: 395 RGLRQGD 401
           +GL+QGD
Sbjct: 31  KGLKQGD 11


>BG447966 weakly similar to PIR|G96509|G96 protein F27F5.21 [imported] -
           Arabidopsis thaliana, partial (7%)
          Length = 687

 Score = 97.8 bits (242), Expect = 1e-20
 Identities = 66/210 (31%), Positives = 105/210 (49%), Gaps = 3/210 (1%)
 Frame = +2

Query: 113 WLAEGDQNSGFFHSTINWKRRTNSIVGLWVE-GVWEEDPSRVKAAVESFFEAKFKSD--V 169
           WL +GD+N+ FFHS  + +R+ N I  L  E G W +    V+  + ++F   F S    
Sbjct: 5   WLKDGDKNTKFFHSKASQRRKVNEIKKLKDETGNWCKGEENVERLLITYFNNLFTSSNPT 184

Query: 170 *DRPRLEGVPFKTLSDSDNSVLIGPMDEVEIKDAVWACGGNKSPGPDGFNFRFIKQFWDV 229
                 E V  K LS            E E+ +A+      K+PGPDG    F +++W +
Sbjct: 185 AIEETCEVVKGK-LSHEHIVWCEKEFTEEEVLEAINQMHPVKAPGPDGLPALFFQKYWHI 361

Query: 230 LKGDVIKAVREFWRRGAWSRGCNASFIVLIPKVNSPQPLNEFRPISLIGCIYKVISKLLA 289
           +  +V + V +       +   N +FIVLIPK  +P    ++RPISL   + K+I+K++A
Sbjct: 362 VGKEVQQMVLQVLNNSMETEELNKTFIVLIPKGKNPNTPKDYRPISLCNVVMKIITKVIA 541

Query: 290 TRLSTVVGKVIDERQFAFVGNRNMLDSVVV 319
            R+   +  VID  Q AFV  R + D+ ++
Sbjct: 542 NRVKQTLPDVIDVEQSAFVQGRLITDNALI 631


>BG587108 similar to PIR|G96509|G9 protein F27F5.21 [imported] - Arabidopsis
           thaliana, partial (17%)
          Length = 677

 Score = 65.5 bits (158), Expect(2) = 4e-19
 Identities = 35/87 (40%), Positives = 46/87 (52%)
 Frame = +3

Query: 222 FIKQFWDVLKGDVIKAVREFWRRGAWSRGCNASFIVLIPKVNSPQPLNEFRPISLIGCIY 281
           F +  W ++K D++K V  F   G      N + I LIPK   P  + E RPISL    Y
Sbjct: 411 FFQHSWHIIKMDLLKMVNSFLASGKLDTRLNTTNICLIPKKKRPTRMTELRPISLCNVGY 590

Query: 282 KVISKLLATRLSTVVGKVIDERQFAFV 308
           K+ISK+L  RL   +  +I E Q AFV
Sbjct: 591 KIISKVLCQRLKVCLPSLISETQSAFV 671



 Score = 47.8 bits (112), Expect(2) = 4e-19
 Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 9/120 (7%)
 Frame = +2

Query: 107 QKARSRWLAEGDQNSGFFHSTINWKRRTNSIVGLW-VEGVWEEDPSRVKAAVESFFEAKF 165
           QK+R+ W   GD N  F+H+    +   N IVGL+  +G W  +   V+     +FE  F
Sbjct: 59  QKSRNMWHISGDLNKKFYHALTKQRHARNRIVGLYDYDGNWITEEQGVEKVAVDYFEDLF 238

Query: 166 KSDV*DRPRLEGVPFKTLSDSDNSVLIGPMD--------EVEIKDAVWACGGNKSPGPDG 217
           +       R     F    D   S +   M+        E E++ A++     K+PGPDG
Sbjct: 239 Q-------RTTPTGFDGFLDEITSSITPQMNQRLLRLATEEEVRLALFIMHPEKAPGPDG 397


>TC81386 similar to GP|10140689|gb|AAG13524.1 putative non-LTR retroelement
           reverse transcriptase {Oryza sativa (japonica
           cultivar-group)}, partial (1%)
          Length = 798

 Score = 69.7 bits (169), Expect = 3e-12
 Identities = 37/137 (27%), Positives = 69/137 (50%)
 Frame = -1

Query: 1   FRVLNCWLDDPRITTVVTSTWKDMKVKGWGSYVLKEKLKGLRGRLKDWNKAVFGDLTTRR 60
           F+ +  W   P    ++   W + +V G   +VL +KLK L+  LK WNK  FG++ ++ 
Sbjct: 411 FKFMKMWSAHPDCINIIKQCWAN-QVVGCPMFVLNQKLKNLKEVLKVWNKNTFGNVHSQV 235

Query: 61  EEVVQKINILDVKEEETGLSQEEVATRESLLFDFWTVLRHHESLLCQKARSRWLAEGDQN 120
           +   ++++ + VK +  G S   +   ++   +  + L   E    +K++  W  EGD+N
Sbjct: 234 DNAYKELDDIQVKIDSIGYSDVLMDQEKAAQLNLESALNIEEVFWHEKSKVNWHCEGDRN 55

Query: 121 SGFFHSTINWKRRTNSI 137
           + FFH     KR ++ I
Sbjct: 54  TAFFHRVAKIKRTSSLI 4


>BQ148771 
          Length = 680

 Score = 68.2 bits (165), Expect = 1e-11
 Identities = 38/129 (29%), Positives = 68/129 (52%)
 Frame = -3

Query: 522 RASCLKTWEPVIKKMRNRLALWKQKLISFGGRICLIQSVLSALPLIFLSFFRIPACVVKV 581
           R S  K+   V  ++   LA WK   +S   R+ L +SV+ A+PL  +    IP   ++ 
Sbjct: 627 RKSTKKSRFSVYYQVHVMLANWKANHLSLARRVTLAKSVIEAVPLYPMMTTIIPKACIEE 448

Query: 582 CNRIMRDFLWGASDGGKRIAWVKWLDVCQPKDVGGLGIKDLDLFNRSLLGKWLWRWRTKK 641
             ++ R F+WG ++  +R   V W  + +PK + GLG++ LD+ N++ + K  W   +  
Sbjct: 447 IQKLQRKFVWGDTEVSRRYHAVGWETMSKPKTIYGLGLRRLDVMNKACIMKLGWSIYSGS 268

Query: 642 QALWCQVIR 650
            +L  +V+R
Sbjct: 267 NSLCTEVMR 241


>BG647708 weakly similar to GP|13786450|gb| putative reverse transcriptase
           {Oryza sativa}, partial (9%)
          Length = 708

 Score = 65.5 bits (158), Expect = 6e-11
 Identities = 33/94 (35%), Positives = 56/94 (59%)
 Frame = +1

Query: 394 ERGLRQGDPLAPFLFLFVAEGLNGLFQNSVRLSKFKGVKVGADTGLEVSLLQFADDTVFL 453
           E+GLRQGDPL+P+LF+  A  L+GL +         G++V A +  +++ L FADD++  
Sbjct: 7   EKGLRQGDPLSPYLFILCANVLSGLLKREGNKQNLHGIQV-ARSDPKITHLLFADDSLLF 183

Query: 454 GEATIQNLVSLKCILRCFELVSGLKVNFHKSKLA 487
             A +    ++  +L  ++  SG  VNF KS+++
Sbjct: 184 ARANLTEAATIMQVLHSYQSASGQLVNFEKSEVS 285


>CB893203 
          Length = 800

 Score = 63.5 bits (153), Expect = 2e-10
 Identities = 33/82 (40%), Positives = 42/82 (50%)
 Frame = -3

Query: 3   VLNCWLDDPRITTVVTSTWKDMKVKGWGSYVLKEKLKGLRGRLKDWNKAVFGDLTTRREE 62
           +L CW D P     V   W   +V  WG YVLKEK K +R  LKDW+     +L  R  +
Sbjct: 672 MLKCWADLPGYHLFVKDKWNSFQVSRWGGYVLKEK*KMVRNNLKDWHHNHTRNLDARIND 493

Query: 63  VVQKINILDVKEEETGLSQEEV 84
           + + I  LD K E+  L  EEV
Sbjct: 492 IRESIAYLDSKGEDLTLDTEEV 427


>AW736247 weakly similar to PIR|T14619|T146 reverse transcriptase - beet
           retrotransposon (fragment), partial (4%)
          Length = 305

 Score = 57.8 bits (138), Expect = 1e-08
 Identities = 24/56 (42%), Positives = 36/56 (63%), Gaps = 2/56 (3%)
 Frame = +1

Query: 197 EVEIKDAVWACGGNKS--PGPDGFNFRFIKQFWDVLKGDVIKAVREFWRRGAWSRG 250
           E E++ AVW C  + S  PGPDG NF F+K++W+++K D ++ V EF   G   +G
Sbjct: 127 EEEVRKAVWDCDSSHS*NPGPDGVNFTFVKEYWELIKVDFLRVVMEFHTNGKLGKG 294


>BF647389 
          Length = 404

 Score = 52.8 bits (125), Expect = 4e-07
 Identities = 35/126 (27%), Positives = 61/126 (47%)
 Frame = +2

Query: 510 IPFVYLGIPVGARASCLKTWEPVIKKMRNRLALWKQKLISFGGRICLIQSVLSALPLIFL 569
           +P  YLG+P+ ++   +      +KK+  R+     KL+S+ G + LI+ VL  +   + 
Sbjct: 32  LPSRYLGVPLSSKKLYVIQR---VKKIICRIEN*SSKLLSYAGSLQLIKIVLFGVQPYWS 202

Query: 570 SFFRIPACVVKVCNRIMRDFLWGASDGGKRIAWVKWLDVCQPKDVGGLGIKDLDLFNRSL 629
             F +P  V+K+     R FL     G  + A +    +C PK  GG  + DL + N++ 
Sbjct: 203 QVFVLP*KVIKLIQTTCRIFL*TGKSGTSKRALIAREHICLPKTAGGWNVIDLKVXNQTA 382

Query: 630 LGKWLW 635
           + K  W
Sbjct: 383 ICKLXW 400


>TC91765 weakly similar to GP|19881779|gb|AAM01180.1 Putative retroelement
           {Oryza sativa (japonica cultivar-group)}, partial (1%)
          Length = 625

 Score = 40.4 bits (93), Expect(2) = 2e-06
 Identities = 20/61 (32%), Positives = 30/61 (48%)
 Frame = +2

Query: 373 CLRSASVSVLVNGSPTGEFKMERGLRQGDPLAPFLFLFVAEGLNGLFQNSVRLSKFKGVK 432
           C+ S    VLVN          RGL+QGD L+P++F+   EGL+ L  ++       G  
Sbjct: 104 CVESNDYYVLVNNDAVDPIIPSRGLQQGDHLSPYIFIICVEGLSFLIPHAKERGDTHGTS 283

Query: 433 V 433
           +
Sbjct: 284 I 286



 Score = 29.3 bits (64), Expect(2) = 2e-06
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +1

Query: 343 KAYDTVDWSFLEYMMGRMNFCSKWISWI 370
           K Y+ VD  +L+ +M +M F ++WI W+
Sbjct: 13  KVYNRVD*DYLKEIMIKMGFNNRWIYWM 96


>TC77455 similar to GP|22335695|dbj|BAC10549. nine-cis-epoxycarotenoid
           dioxygenase1 {Pisum sativum}, partial (43%)
          Length = 1865

 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 19/41 (46%), Positives = 27/41 (65%)
 Frame = -3

Query: 609 CQPKDVGGLGIKDLDLFNRSLLGKWLWRWRTKKQALWCQVI 649
           C P+  GGLG++D+ L N SLL KW WR    + +LW +V+
Sbjct: 969 CLPRCKGGLGVRDIRLVNVSLLAKWWWRLLQDQSSLWKEVL 847


>CB891696 
          Length = 638

 Score = 45.8 bits (107), Expect = 5e-05
 Identities = 41/149 (27%), Positives = 69/149 (45%), Gaps = 6/149 (4%)
 Frame = +1

Query: 458 IQNLVSLKCILRCFELVSGLKVNFHKSKLAAIAIETGVAHQFASFLNCKVMTIPFVYLGI 517
           ++N++++K I+  FEL S L VNF KS L  + +          ++ CKV  + F YLGI
Sbjct: 4   VENILTMKTIVSYFELASSLWVNFLKSGLINLNVIGHF*GW*NIYIKCKVH*VIFKYLGI 183

Query: 518 PVGARASCLKTWEPVIKKMRNRLALWKQKLISFGGRICLIQSVLSALPL------IFLSF 571
            VG     +   E ++K + N L  W      +  +    Q+  S +        I+ S 
Sbjct: 184 LVGENPCRVNM*ELLLKLLTN*LGSW------WNTK*LWTQNGFSQIHAK*ISQNIYFSL 345

Query: 572 FRIPACVVKVCNRIMRDFLWGASDGGKRI 600
            +IP  V ++ +++   FL G     K+I
Sbjct: 346 MKIPVKV*ELISQLKTQFL*GNLKVTKKI 432


>BF006686 
          Length = 325

 Score = 39.7 bits (91), Expect = 0.004
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = +3

Query: 519 VGARASCLKTWEPVIKKMRNRLALWKQKLISFGGRICLI 557
           V  R   L  WEP+++ +   L  W  KL+SFGGRI L+
Sbjct: 207 VEGRGEILPMWEPLLEHVNKMLKSWGNKLLSFGGRIVLL 323


>TC80819 weakly similar to GP|10140689|gb|AAG13524.1 putative non-LTR
           retroelement reverse transcriptase {Oryza sativa
           (japonica cultivar-group)}, partial (2%)
          Length = 1262

 Score = 38.9 bits (89), Expect = 0.006
 Identities = 18/36 (50%), Positives = 23/36 (63%)
 Frame = +1

Query: 616 GLGIKDLDLFNRSLLGKWLWRWRTKKQALWCQVIRA 651
           GLG+     FN SLLGKW WR    K+ LW +V++A
Sbjct: 31  GLGV---GAFNLSLLGKWCWRLLVDKEGLWHRVLKA 129


>TC83624 homologue to PIR|G84581|G84581 copia-like retroelement pol
           polyprotein [imported] - Arabidopsis thaliana, partial
           (1%)
          Length = 831

 Score = 38.9 bits (89), Expect = 0.006
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = +1

Query: 481 FHKSKLAAIAIETGVAHQFASFLNCKVMTIPFVYLGIPVGARASCLKTWEPVIKKMR 537
           F +    A+ +E        +FL C V  +PF +LG+P+GA      T +PV+  ++
Sbjct: 256 FSRVNFMALNLEESFVEASPNFLLCNVNEVPFCFLGLPIGANPKRSSTRKPVLDSLQ 426


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.325    0.140    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,720,846
Number of Sequences: 36976
Number of extensions: 374646
Number of successful extensions: 2676
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 2603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2665
length of query: 651
length of database: 9,014,727
effective HSP length: 102
effective length of query: 549
effective length of database: 5,243,175
effective search space: 2878503075
effective search space used: 2878503075
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)