BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0058b.2
(1371 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F2... 236 5e-62
AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsi... 218 1e-56
BG587156 similar to PIR|G85055|G8 probable polyprotein [imported... 189 6e-48
BG644690 weakly similar to GP|18542179|gb putative pol protein {... 136 1e-42
BG587170 similar to PIR|F86470|F8 probable retroelement polyprot... 171 2e-42
BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2... 169 9e-42
CB893805 similar to GP|10177935|d copia-type polyprotein {Arabid... 166 4e-41
BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sati... 111 8e-35
TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative ret... 142 9e-34
AJ502495 weakly similar to GP|18071369|g putative gag-pol polypr... 125 9e-29
TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-relate... 77 2e-26
TC89912 weakly similar to PIR|B84512|B84512 probable retroelemen... 110 5e-24
BI262917 weakly similar to GP|19920130|g Putative retroelement {... 103 6e-22
BG586293 weakly similar to PIR|E84473|E84 probable retroelement ... 87 4e-17
BG648737 weakly similar to GP|21433|emb|CA ORF3 {Solanum tuberos... 84 5e-16
BG586273 weakly similar to PIR|F86470|F8 probable retroelement p... 80 4e-15
BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vu... 79 1e-14
BE239977 weakly similar to GP|23237899|db polyprotein-like {Oryz... 77 4e-14
BG453259 homologue to GP|21434|emb|CA ORF4 {Solanum tuberosum}, ... 76 1e-13
BE941052 weakly similar to PIR|B85188|B85 retrotransposon like p... 72 2e-12
>BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F20P5.25
[imported] - Arabidopsis thaliana, partial (10%)
Length = 744
Score = 236 bits (602), Expect = 5e-62
Identities = 115/241 (47%), Positives = 166/241 (68%), Gaps = 1/241 (0%)
Frame = +2
Query: 1004 KVCRLKKSLYGLKQSPRSWFGRFSDVVMEFGLRRSESDHTVFFKQTNKGCILLVVYVDDI 1063
KVC L+KS+YGLKQ+ R W+ + S+ ++ FG +S SD ++F K + L+VYVDDI
Sbjct: 17 KVCELQKSIYGLKQASRQWYSKLSESLISFGYLQSSSDFSLFTKFKDSSFTTLLVYVDDI 196
Query: 1064 VITGSDSEGIGNLKTFLQMKFQTKDLGILKYFLGIEVVYSKNGIMISQRKYVLDMLAETG 1123
V+ G+D I ++K FL +F+ KDLG L+YFLG+EV SK GI+++QRKY L++L ++G
Sbjct: 197 VLAGNDISEIQHVKCFLIDRFKIKDLGSLRYFLGLEVARSKQGILLNQRKYTLELLEDSG 376
Query: 1124 LMGSKPCETPMEPGMKLTAEGVP-FSDPQQYRRLVGKLNYLTVTRPDIAFPVSVVSQFMS 1182
+ K TP + +KL P ++D QYRRL+GKL YLT TRPDI+F V +SQF+S
Sbjct: 377 NLAVKSTLTPYDISLKLHNSDSPLYNDETQYRRLIGKLIYLTTTRPDISFAVQQLSQFVS 556
Query: 1183 SPTDAHWEALIRIVKYLKKAPGRGIVYRDHGHMRVEAFSDADWAGSPMDRKSTTGYCVFL 1242
P H++A IR+++YLK AP +G+ Y ++++ +F+D+DWA P RKS TGY VFL
Sbjct: 557 KPQQVHYQAAIRVLQYLKTAPAKGLFYSATSNLKLSSFADSDWATCPTTRKSVTGYWVFL 736
Query: 1243 G 1243
G
Sbjct: 737 G 739
>AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsis thaliana},
partial (9%)
Length = 675
Score = 218 bits (556), Expect = 1e-56
Identities = 104/198 (52%), Positives = 138/198 (69%)
Frame = +1
Query: 873 LSHAGWRQAMEEEMLALEHNATWDLVPLPAGKQVVGCKWVYTTKVNPDGSLARLKARLVA 932
LS W QAM+ E AL N TWDLVPLP K+ +GCKWVY K NPDGS+ + KARLVA
Sbjct: 82 LSDPRWLQAMKTEYKALIDNKTWDLVPLPPHKKAIGCKWVYRVKENPDGSVNKFKARLVA 261
Query: 933 KGYAQTYGVDYTDTFSPVAKLSSVRILISLAATNHWPLFQLDVKNAFLHGDLQDEVYMEQ 992
KG++QT G DYT+TFSPV K ++R+++++A T W + Q+D+ NAFL+G LQ+EVYM Q
Sbjct: 262 KGFSQTLGCDYTETFSPVIKPVTIRLILTIAITYKWEIQQIDINNAFLNGFLQEEVYMSQ 441
Query: 993 PPGFVAQGECGKVCRLKKSLYGLKQSPRSWFGRFSDVVMEFGLRRSESDHTVFFKQTNKG 1052
P GF A + VC+L KSLYGLKQ+PR+W+ + ++FG +S D ++ N
Sbjct: 442 PQGFEAANK-SLVCKLNKSLYGLKQAPRAWYEXLTSAQIQFGFTKSRCDPSLLIYNQNGA 618
Query: 1053 CILLVVYVDDIVITGSDS 1070
CI L +YVDDI+ITGS +
Sbjct: 619 CIYLXIYVDDILITGSSA 672
>BG587156 similar to PIR|G85055|G8 probable polyprotein [imported] -
Arabidopsis thaliana, partial (17%)
Length = 618
Score = 189 bits (480), Expect = 6e-48
Identities = 90/191 (47%), Positives = 128/191 (66%)
Frame = -1
Query: 855 SFVAALDSVSVPKSLSDALSHAGWRQAMEEEMLALEHNATWDLVPLPAGKQVVGCKWVYT 914
+F+ L+ +P+S +A+ W++++ E A+ N TW LP GK+ V +W++T
Sbjct: 591 AFMVNLNENHIPRSYEEAMEDKEWKESVGAEAGAMIKNDTWYESELPKGKKAVSSRWIFT 412
Query: 915 TKVNPDGSLARLKARLVAKGYAQTYGVDYTDTFSPVAKLSSVRILISLAATNHWPLFQLD 974
K DGS+ R K RLVA+G+ TYG DY +TF+PVAKL ++RI++SLA W L+Q+D
Sbjct: 411 IKYKADGSIERKKTRLVARGFTLTYGEDYIETFAPVAKLHTIRIVLSLAVNLGWGLWQMD 232
Query: 975 VKNAFLHGDLQDEVYMEQPPGFVAQGECGKVCRLKKSLYGLKQSPRSWFGRFSDVVMEFG 1034
VKNAFL G+L+DEVYM PPG + G V RLKK++YGLKQSPR+W+ + S + G
Sbjct: 231 VKNAFLQGELEDEVYMYPPPGLEHLVKRGNVLRLKKAIYGLKQSPRAWYNKLSTTLNGRG 52
Query: 1035 LRRSESDHTVF 1045
R+SE DHT+F
Sbjct: 51 FRKSELDHTLF 19
>BG644690 weakly similar to GP|18542179|gb putative pol protein {Zea mays},
partial (22%)
Length = 629
Score = 136 bits (343), Expect(2) = 1e-42
Identities = 64/141 (45%), Positives = 101/141 (71%)
Frame = -2
Query: 923 LARLKARLVAKGYAQTYGVDYTDTFSPVAKLSSVRILISLAATNHWPLFQLDVKNAFLHG 982
+ R K++LV +GY Q G+DY + FSPVA++ ++RILI+ AA + L+Q+DVK+AF++G
Sbjct: 424 ITRNKSKLVVQGYNQKEGIDYDEAFSPVARMEAIRILIAFAAFMGFKLYQMDVKSAFING 245
Query: 983 DLQDEVYMEQPPGFVAQGECGKVCRLKKSLYGLKQSPRSWFGRFSDVVMEFGLRRSESDH 1042
DL++EV+++QPPGF V RL K+LYGLKQ+PR+W+ R S +++ G +R + D+
Sbjct: 244 DLKEEVFVKQPPGFEDAEVPNHVFRLNKTLYGLKQAPRAWYERLSKFLLKNGFKRGKIDN 65
Query: 1043 TVFFKQTNKGCILLVVYVDDI 1063
T+F + +++ VYVDDI
Sbjct: 64 TLFLLKRE*ELLIIQVYVDDI 2
Score = 56.6 bits (135), Expect(2) = 1e-42
Identities = 26/63 (41%), Positives = 39/63 (61%)
Frame = -3
Query: 855 SFVAALDSVSVPKSLSDALSHAGWRQAMEEEMLALEHNATWDLVPLPAGKQVVGCKWVYT 914
SF A + S+ PK++ +AL A W +M+EE+ E + W LVP P GK V+G +WV+
Sbjct: 615 SFSAFISSIE-PKNVKEALRDADWINSMQEELHQFERSKVWYLVPRPEGKTVIGTRWVFR 439
Query: 915 TKV 917
K+
Sbjct: 438 NKL 430
>BG587170 similar to PIR|F86470|F8 probable retroelement polyprotein
[imported] - Arabidopsis thaliana, partial (13%)
Length = 718
Score = 171 bits (432), Expect = 2e-42
Identities = 98/244 (40%), Positives = 145/244 (59%), Gaps = 4/244 (1%)
Frame = -3
Query: 430 LSTQRIIGRGRESDGLYLLD--EGVSKASTAYRTSSV--SPFQLHCRLGHPSLGVLRKLC 485
+ + ++IG G LY+L+ + VS ++ +SS H RLGHP L +
Sbjct: 710 IESSQLIGEGVTKGDLYMLEKLDPVSNYKCSFTSSSSLNKDALWHARLGHPHGRALNLML 531
Query: 486 PQLESLSNFSCESCQFAKHHRSVYLPRLNKRAMSLFHIVHSDVWGPCPVTSKLGYKYFVT 545
P + N +CE+C KH ++V+ PR + + F ++++D+W P S+ +KYFVT
Sbjct: 530 PGVV-FENKNCEACILGKHCKNVF-PRTSTVYENCFDLIYTDLW-TAPSLSRDNHKYFVT 360
Query: 546 FVDDYSRATWLYLMKSRSELFTIFCNFCAEIRTQFNCPIHILRSDNAKEYFSAPFRTFMD 605
F+D+ S+ TWL L+ S+ + F NF A + ++ I ILRSDN EY S F++ +D
Sbjct: 359 FIDEKSKYTWLTLIPSKDRVIDAFKNFQAYVTNHYHAKIKILRSDNGGEYTSYAFKSHLD 180
Query: 606 KHGMIHQSSCIVTPQQNGVAERKNRHLMEVAQALMFQMKVPKCFWADAVLTAAYLINRMP 665
HG++HQ+SC TPQQNGVA+RKN+HLMEVA++LMFQ V TA YLIN +P
Sbjct: 179 HHGILHQTSCPYTPQQNGVAKRKNKHLMEVARSLMFQANVS---------TACYLINWIP 27
Query: 666 STVL 669
+ VL
Sbjct: 26 TKVL 15
>BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2O9.150 -
Arabidopsis thaliana, partial (11%)
Length = 732
Score = 169 bits (427), Expect = 9e-42
Identities = 85/218 (38%), Positives = 136/218 (61%), Gaps = 4/218 (1%)
Frame = +1
Query: 1098 IEVVYSKNGIMISQRKYVLDMLAETGLMGSKPCETPMEPGMKLTAE--GVPFSDPQQYRR 1155
+EV+ ++ GI I QRKYV D+L G+ S P+ P KL + GV D +Y++
Sbjct: 1 VEVIQNEEGIYICQRKYVTDLLERFGMEKSNLSRNPIAPRCKLIKDENGVKV-DATKYKQ 177
Query: 1156 LVGKLNYLTVTRPDIAFPVSVVSQFMSSPTDAHWEALIRIVKYLKKAPGRGIVYRDHGHM 1215
+VG L YL TRPD+ + +S++S+FM+ PT+ H A+ R+++YL GI+Y+ +G
Sbjct: 178 IVGCLMYLAATRPDLMYVLSLISRFMNCPTELHMHAVKRVLRYLNGTINLGIMYKRNGSE 357
Query: 1216 RVEAFSDADWAGSPMDRKSTTGYCVFLGGNLISWKSKKQNVVARSSAEAEYRAMAQTTC- 1274
++EA++D+D+AG DRKST+GY L +SW SKKQ VV S+ +AE+ A A C
Sbjct: 358 KLEAYTDSDYAGDLDDRKSTSGYVFMLSSGAVSWSSKKQPVVTLSTTKAEFIAAAFCACQ 537
Query: 1275 -MWVGQILSEMGIERISPMKLWCDNQAALHISSNPVFH 1311
+W+ ++L ++G + + ++CDN + + +S NPV H
Sbjct: 538 SVWMRRVLEKLGYTQSGSITMYCDNNSTIKLSKNPVLH 651
>CB893805 similar to GP|10177935|d copia-type polyprotein {Arabidopsis
thaliana}, partial (14%)
Length = 778
Score = 166 bits (421), Expect = 4e-41
Identities = 91/257 (35%), Positives = 144/257 (55%), Gaps = 7/257 (2%)
Frame = +3
Query: 860 LDSVSVPKSLSDALSHAGWRQAMEEEMLALEHNATWDLVPLPAGKQVVGCKWVYTTKVNP 919
L S P + +A+ WR +M EM A E N TW+L L +G + +G KW++ TK+N
Sbjct: 24 LTMTSDPTTFEEAVKSEKWRASMNNEMEATERNNTWELTDLRSGAKTIGLKWIFKTKLNE 203
Query: 920 DGSLARLKARLVAKGYAQTYGVDYTDTFSPVAKLSSVRILISLAATNHWPLFQLDVKNAF 979
+G + + KARLVAKGY+Q YGVDYT+ F+PVA+ ++R++I+LAA Q+
Sbjct: 204 NGEIEKYKARLVAKGYSQQYGVDYTEVFAPVARWDTIRMVIALAA-------QIKRDGVC 362
Query: 980 L------HGDLQDEVYMEQPPGFVAQGECGKVCRLKKSLYGLKQSPRSWFGRFSDVVMEF 1033
+ H +++ + R+K++LYGLKQ+PR+W+ R +
Sbjct: 363 IS*M*KAHSCMEN*MRKFLLINHRVM*RRVIS*RVKRALYGLKQAPRAWYSRIEAYFTKE 542
Query: 1034 GLRRSESDHTVFFKQTNKGCILLV-VYVDDIVITGSDSEGIGNLKTFLQMKFQTKDLGIL 1092
G + +HT+F K + G IL++ +YVDD++ G+D K ++ +F DLG +
Sbjct: 543 GFEKCPYEHTLFVKLSEGGKILIISLYVDDLIFIGNDENMFEEFKKSMKKEFNMSDLGKM 722
Query: 1093 KYFLGIEVVYSKNGIMI 1109
YFLG+EV ++ GI I
Sbjct: 723 HYFLGVEVTQNEKGIYI 773
>BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sativa (japonica
cultivar-group)}, partial (8%)
Length = 503
Score = 111 bits (278), Expect(2) = 8e-35
Identities = 59/118 (50%), Positives = 77/118 (65%), Gaps = 1/118 (0%)
Frame = +1
Query: 1017 QSPRSWFGRFSDVVMEFGLRRSESDHTVFFKQTNK-GCILLVVYVDDIVITGSDSEGIGN 1075
QSPR WF RF+ VV +FG + ++DH +F K ++ +L+VYVDDI +TG + I
Sbjct: 1 QSPRDWFDRFT*VVKKFGYIQCQTDHAMFIKHSSTVKKAILIVYVDDIFLTGDHGK*IKR 180
Query: 1076 LKTFLQMKFQTKDLGILKYFLGIEVVYSKNGIMISQRKYVLDMLAETGLMGSKPCETP 1133
LK L +F+ KDLG LKYFLG+EV K G ISQRKYVLD+L ET ++G K P
Sbjct: 181 LKNLLAEEFEIKDLGNLKYFLGMEVARWKKGSSISQRKYVLDLLKETRMIGCKTIRDP 354
Score = 55.5 bits (132), Expect(2) = 8e-35
Identities = 30/55 (54%), Positives = 38/55 (68%), Gaps = 1/55 (1%)
Frame = +2
Query: 1128 KPCETPMEPGMKL-TAEGVPFSDPQQYRRLVGKLNYLTVTRPDIAFPVSVVSQFM 1181
KP ETPM+ +KL T + D +Y+RLVGKL YL+ TRPDI+F V +SQFM
Sbjct: 338 KPSETPMDATVKLGTLDNGTLVDKGRYQRLVGKLIYLSHTRPDISFVVCTMSQFM 502
>TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative retroelement
{Oryza sativa} [Oryza sativa (japonica cultivar-group)],
partial (10%)
Length = 823
Score = 142 bits (358), Expect = 9e-34
Identities = 83/261 (31%), Positives = 132/261 (49%), Gaps = 4/261 (1%)
Frame = +1
Query: 496 CESCQFAKHHRSVYLPRLNKRAMSLFHIVHSDVWGPCPVTSKLGYKYFVTFVDDYSRATW 555
C+ F + + V R + +HSD+WGP VTS G +Y +T +DD+ R W
Sbjct: 22 CKHLLFFGNRKKVSFSTATHRTKGILDYIHSDLWGPSKVTSYGGRRYMMTIIDDFPRKVW 201
Query: 556 LYLMKSRSELFTIFCNFCAEIRTQFNCPIHILRSDNAKEYFSAPFRTFMDKHGMIHQSSC 615
+Y ++ ++E F F + + TQ + L +DN E+ S+ F F HG+ +
Sbjct: 202 VYFLRYKNETFPTFKKWRILVETQTGKNVKKLITDN*LEFCSSDFNEFCTNHGIARHKTI 381
Query: 616 IVTPQQNGVAERKNRHLMEVAQALMFQMKV--PKCFWADAVLTAAYLINRMPSTVLNGVI 673
PQQNGVAER R L+E A+ ++ + + W +A TA +L+NR P + L+ +
Sbjct: 382 PRNPQQNGVAERMIRTLLERARCMLSNAGL*N*RDLWVEAASTACHLVNRSPHSALDFKV 561
Query: 674 PYSVLFPSCSLFPLPPKVFGCTCFVLDVRPQVTKLDPKSLKCVFLGYSRTQKGYR--CFS 731
P + + + ++FGC + L KL P++ +C+FL Y+ KGYR C
Sbjct: 562 PEDIWSGNLVDYS-NLRIFGCPAYAL---VNDGKLAPRAGECIFLSYASESKGYRLWCSD 729
Query: 732 PALGRYLVSADVTFFEDCSFS 752
P + ++S DVTF ED S
Sbjct: 730 PKSQKLILSRDVTFNEDALLS 792
>AJ502495 weakly similar to GP|18071369|g putative gag-pol polyprotein {Oryza
sativa}, partial (9%)
Length = 542
Score = 125 bits (315), Expect = 9e-29
Identities = 64/134 (47%), Positives = 90/134 (66%), Gaps = 4/134 (2%)
Frame = +2
Query: 1223 ADWAGSPMDRKSTTGYCVFLGGNLISWKSKKQNVVARSSAEAEYRAMAQTTC----MWVG 1278
+DWAG RKST+GY LG ISW SKKQ VVA S+AEAEY +A T+C +W+
Sbjct: 2 SDWAGDTETRKSTSGYAFHLGTGAISWSSKKQPVVAFSTAEAEY--IASTSCATQTVWLR 175
Query: 1279 QILSEMGIERISPMKLWCDNQAALHISSNPVFHERTKHIEVDCHFIREKLQQNLISTSYV 1338
+IL M E+ +P K++CDN++A+ +S NPVFH R+KHI++ H IRE + + + Y
Sbjct: 176 RILEVMHHEQNTPTKIYCDNKSAIALSKNPVFHGRSKHIDIQFHKIRELIAEKEVVIEYC 355
Query: 1339 RTGDQLADVFTKAL 1352
T +++AD+FTK L
Sbjct: 356 PTEEKIADIFTKPL 397
>TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
(EC 3.4.23.-);, partial (7%)
Length = 705
Score = 77.0 bits (188), Expect(2) = 2e-26
Identities = 31/79 (39%), Positives = 54/79 (68%)
Frame = +3
Query: 1275 MWVGQILSEMGIERISPMKLWCDNQAALHISSNPVFHERTKHIEVDCHFIREKLQQNLIS 1334
+W+ +++ E+G ++ + ++CD+Q+ALHI+ NP FH RTKHI + HF+RE +++ +
Sbjct: 255 IWMQRLMEELGHKQ-EQITVYCDSQSALHIARNPAFHSRTKHIGIQYHFVREVVEEGSVD 431
Query: 1335 TSYVRTGDQLADVFTKALN 1353
+ T D LAD TK++N
Sbjct: 432 MQKIHTNDNLADAMTKSIN 488
Score = 62.0 bits (149), Expect(2) = 2e-26
Identities = 33/75 (44%), Positives = 44/75 (58%)
Frame = +1
Query: 1194 RIVKYLKKAPGRGIVYRDHGHMRVEAFSDADWAGSPMDRKSTTGYCVFLGGNLISWKSKK 1253
RI++Y+K G + + + V + D+D+AG RKSTTGY L G +SW SK
Sbjct: 7 RIMRYIKGTSGVAVCFGG-SELTVRGYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLSKL 183
Query: 1254 QNVVARSSAEAEYRA 1268
Q VVA S+ EAEY A
Sbjct: 184 QTVVALSTTEAEYMA 228
>TC89912 weakly similar to PIR|B84512|B84512 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(10%)
Length = 814
Score = 110 bits (274), Expect = 5e-24
Identities = 59/165 (35%), Positives = 101/165 (60%), Gaps = 4/165 (2%)
Frame = +1
Query: 1190 EALIRIVKYLKKAPGRGIVYRDHGHMR--VEAFSDADWAGSPMDRKSTTGYCVFLGGNLI 1247
+AL ++KYL ++ + Y +E + DAD+AG+ RKS +G+ L G I
Sbjct: 1 QALKWVLKYLNESLKSSLKYTKAAQEEDALEGYVDADYAGNVDTRKSLSGFVFTLYGTTI 180
Query: 1248 SWKSKKQNVVARSSAEAEYRAMAQTT--CMWVGQILSEMGIERISPMKLWCDNQAALHIS 1305
SWK+ +Q+VV S+ +AEY A + +W+ ++ E+GI + +K+ CD+Q+A+H++
Sbjct: 181 SWKANQQSVVTLSTTQAEYIAFVEGVKDAIWLKGMIGELGITQ-EYVKIHCDSQSAIHLA 357
Query: 1306 SNPVFHERTKHIEVDCHFIREKLQQNLISTSYVRTGDQLADVFTK 1350
++ V+HERTKHI++ HFIR+ ++ I + + + ADVFTK
Sbjct: 358 NHQVYHERTKHIDIRLHFIRDMIESKEIVVEKMASEENPADVFTK 492
>BI262917 weakly similar to GP|19920130|g Putative retroelement {Oryza
sativa} [Oryza sativa (japonica cultivar-group)],
partial (8%)
Length = 426
Score = 103 bits (256), Expect = 6e-22
Identities = 59/135 (43%), Positives = 80/135 (58%)
Frame = +1
Query: 598 APFRTFMDKHGMIHQSSCIVTPQQNGVAERKNRHLMEVAQALMFQMKVPKCFWADAVLTA 657
A F F++K + S TPQQNGVAER NR L+E +A++ + K FWA+AV TA
Sbjct: 25 ASF*HFVNKRVL*GNSXVAHTPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAVKTA 204
Query: 658 AYLINRMPSTVLNGVIPYSVLFPSCSLFPLPPKVFGCTCFVLDVRPQVTKLDPKSLKCVF 717
Y+INR PSTV++ P ++ + VFGC +V+ + TKLDPKS KC+F
Sbjct: 205 CYVINRSPSTVIDLKTPME-MWKGKPVDYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIF 381
Query: 718 LGYSRTQKGYRCFSP 732
LGY+ KGY + P
Sbjct: 382 LGYADNVKGYXLWDP 426
>BG586293 weakly similar to PIR|E84473|E84 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(7%)
Length = 763
Score = 87.0 bits (214), Expect = 4e-17
Identities = 40/89 (44%), Positives = 61/89 (67%)
Frame = +2
Query: 894 TWDLVPLPAGKQVVGCKWVYTTKVNPDGSLARLKARLVAKGYAQTYGVDYTDTFSPVAKL 953
T LV P G + +G +W+Y K N DG+L + KARLVAKGY + G+D+ + F+PV ++
Sbjct: 56 TLKLVKKPTGVKPIGLRWIYKIKRNEDGTLIKYKARLVAKGYVKQQGIDFDEVFAPVVRI 235
Query: 954 SSVRILISLAATNHWPLFQLDVKNAFLHG 982
++ +L++LAATN + +DVK AFL+G
Sbjct: 236 ETI*LLLALAATNGC*IHHIDVKIAFLNG 322
>BG648737 weakly similar to GP|21433|emb|CA ORF3 {Solanum tuberosum}, partial
(10%)
Length = 804
Score = 83.6 bits (205), Expect = 5e-16
Identities = 44/107 (41%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Frame = +3
Query: 805 DTQSLPSIPLVSSDPHDNLDLPIALRKGKRTC-SYPISSYVTSNKLSPASKSFVAALDSV 863
D + IP V D D I+LRK KR+C S+PI +++ +KLSP +FV+ LD +
Sbjct: 498 DNEICEPIPTVEFD-----DRLISLRKDKRSCTSHPICKFISYDKLSPHHLAFVSNLDKI 662
Query: 864 SVPKSLSDALSHAGWRQAMEEEMLALEHNATWDLVPLPAGKQVVGCK 910
+P S+ ++L++ W++A+ E+ ALE N TW+L LP+GK +GCK
Sbjct: 663 QIPNSVHESLTNP*WKKAILGEIHALEKNETWELSDLPSGKHPMGCK 803
Score = 32.3 bits (72), Expect = 1.3
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 727 YRCFSPALGRYLVSADVTFFEDCSF 751
Y+C+SP ++ S DVTFFED F
Sbjct: 3 YKCYSPITKKFYNSMDVTFFEDQPF 77
>BG586273 weakly similar to PIR|F86470|F8 probable retroelement polyprotein
[imported] - Arabidopsis thaliana, partial (7%)
Length = 705
Score = 80.5 bits (197), Expect = 4e-15
Identities = 44/95 (46%), Positives = 57/95 (59%), Gaps = 3/95 (3%)
Frame = -2
Query: 657 AAYLINRMPSTVLNGVIPYSVLF---PSCSLFPLPPKVFGCTCFVLDVRPQVTKLDPKSL 713
A YLINR+P+ VL P+ VL PS + +VFGC C+VL KL+ +S
Sbjct: 704 ACYLINRIPTRVLKDQAPFEVLNQRKPSLTYM----RVFGCLCYVLVPGELRNKLEARSR 537
Query: 714 KCVFLGYSRTQKGYRCFSPALGRYLVSADVTFFED 748
K +F+GYS TQKGY+C+ P R LVS DV F E+
Sbjct: 536 KAMFIGYSTTQKGYKCYDPEARRVLVSRDVKFIEE 432
>BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vulgaris},
partial (13%)
Length = 494
Score = 79.0 bits (193), Expect = 1e-14
Identities = 47/126 (37%), Positives = 68/126 (53%), Gaps = 5/126 (3%)
Frame = +1
Query: 1167 RPDIAFPVSVVSQFMSSPTDAHWEALIRIVKYLKKAPGRGIVYRDHGHMRVE---AFSDA 1223
RPDI + VSV+S+FM P H A RI++Y++ G+++ V +SD+
Sbjct: 121 RPDICYSVSVISKFMHDPRKPHLIAANRILRYVRGTMEYGLLFPYGAKSEVYELICYSDS 300
Query: 1224 DWAGSPMDRKSTTGYCVFLGGNLISWKSKKQNVVARSSAEAEYRA--MAQTTCMWVGQIL 1281
DW G DR+ST+GY ISW +KKQ + A SS EAEY A A +W+ ++
Sbjct: 301 DWCG---DRRSTSGYVFKFNDAAISWCTKKQPITALSSYEAEYIAGTFATFQALWLDSVI 471
Query: 1282 SEMGIE 1287
E+ E
Sbjct: 472 KELKCE 489
>BE239977 weakly similar to GP|23237899|db polyprotein-like {Oryza sativa
(japonica cultivar-group)}, partial (2%)
Length = 514
Score = 77.4 bits (189), Expect = 4e-14
Identities = 43/99 (43%), Positives = 55/99 (55%)
Frame = -2
Query: 687 LPPKVFGCTCFVLDVRPQVTKLDPKSLKCVFLGYSRTQKGYRCFSPALGRYLVSADVTFF 746
L P++FGCT FV +K D ++LKCVF+ YS TQKGYRC+ P +Y VS DVTF
Sbjct: 465 LTPRIFGCTSFVHIHSDGRSKFDHRALKCVFIRYSSTQKGYRCYHPPSRKYFVSRDVTFH 286
Query: 747 EDCSFSGWLPSSFPVCESEDTFLTYITTSPAPQTTTGTG 785
E S+ G SS ED L + + P+ TG
Sbjct: 285 EQESYFGQN*SSSGGKYKEDESLLLLDLTFGPEIEVETG 169
>BG453259 homologue to GP|21434|emb|CA ORF4 {Solanum tuberosum}, partial (5%)
Length = 657
Score = 75.9 bits (185), Expect = 1e-13
Identities = 55/150 (36%), Positives = 81/150 (53%), Gaps = 6/150 (4%)
Frame = -2
Query: 1195 IVKYLKKAPGRGIVYRDHGHMRVEAFSDADWAGSPMDRKSTTGYCVFLGGNLISWKSKKQ 1254
+++ L + + IV++ + +E + + AG +DR ST+GY +FLGGN++ K Q
Sbjct: 566 LIEGLXSSGTQMIVFKRE*KLSMEVYXNTVCAGWIVDRGSTSGY*MFLGGNMVE*K---Q 396
Query: 1255 NVVARSSAEAEYRAMAQTTCMWVGQILS----EMGIERISPMKLWCDNQAALHISSNPVF 1310
NVVAR + +Q + + L ++ I PM L+ +N I+ NPV
Sbjct: 395 NVVAR*VQRHNFELCSQGL*RVMDEELKIKLDDLIINYKDPMTLF*NNNFVSRIAHNPVQ 216
Query: 1311 HERTKHIEVDCHFIREKLQQNLI--STSYV 1338
H RTKHIE+D HFI EKL LI STS V
Sbjct: 215 HYRTKHIEIDQHFIIEKLYSGLIL*STSLV 126
>BE941052 weakly similar to PIR|B85188|B85 retrotransposon like protein
[imported] - Arabidopsis thaliana, partial (4%)
Length = 480
Score = 71.6 bits (174), Expect = 2e-12
Identities = 32/73 (43%), Positives = 48/73 (64%)
Frame = +2
Query: 1294 LWCDNQAALHISSNPVFHERTKHIEVDCHFIREKLQQNLISTSYVRTGDQLADVFTKALN 1353
L CD +A +++ NPV+H R KHI +D HF+R+ +QQ + +V T DQLAD TK L+
Sbjct: 23 LRCDYLSATYLTHNPVYHSRMKHISIDIHFVRDLVQQGKLKVQHVCTVDQLADCLTKPLS 202
Query: 1354 GVRNDFICNKLGM 1366
R+ + NK+G+
Sbjct: 203 KSRHQLLRNKIGV 241
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.321 0.135 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,826,938
Number of Sequences: 36976
Number of extensions: 715245
Number of successful extensions: 5182
Number of sequences better than 10.0: 167
Number of HSP's better than 10.0 without gapping: 4361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4937
length of query: 1371
length of database: 9,014,727
effective HSP length: 108
effective length of query: 1263
effective length of database: 5,021,319
effective search space: 6341925897
effective search space used: 6341925897
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)
Lotus: description of TM0058b.2