BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0057b.8
(558 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC86137 weakly similar to PIR|A96673|A96673 probable cytochrome ... 32 0.49
TC86135 similar to PIR|A96673|A96673 probable cytochrome P450 F1... 32 0.49
TC87215 homologue to SP|O65759|H2A_CICAR Histone H2A. [Chickpea ... 32 0.49
TC87216 homologue to SP|O65759|H2A_CICAR Histone H2A. [Chickpea ... 32 0.49
TC86786 similar to GP|8778315|gb|AAF79324.1| F14J16.29 {Arabidop... 31 1.1
TC86785 similar to GP|13876504|gb|AAK43480.1 hypothetical protei... 31 1.1
TC84294 homologue to GP|168765|gb|AAA33563.1|| plasma membrane H... 31 1.4
BQ136398 weakly similar to GP|15145286|gb| Hypothetical protein ... 30 1.9
CB891664 similar to GP|3341693|gb| unknown protein {Arabidopsis ... 30 1.9
TC77213 similar to PIR|T10861|T10861 phaseolin G-box binding pro... 30 2.4
TC86784 similar to GP|8778315|gb|AAF79324.1| F14J16.29 {Arabidop... 30 2.4
BQ137258 similar to GP|5917666|gb| extensin-like protein {Zea ma... 30 3.2
TC79702 MtN14 30 3.2
TC81858 similar to GP|18252179|gb|AAL61922.1 unknown protein {Ar... 30 3.2
TC83149 similar to GP|13561982|gb|AAK30594.1 flagelliform silk p... 29 4.2
BQ144306 weakly similar to GP|23093252|gb| CG13731-PA {Drosophil... 29 4.2
BQ751848 homologue to GP|22830599|db ORF1 {Oryza sativa (japonic... 29 4.2
TC91651 SP|P40389|UV22_SCHPO UV-induced protein uvi22. [Fission ... 29 5.4
TC83836 GP|21618075|gb|AAM67125.1 unknown {Arabidopsis thaliana}... 29 5.4
TC85251 homologue to PIR|JQ2128|JQ2128 metallothionein - soybean... 28 7.1
>TC86137 weakly similar to PIR|A96673|A96673 probable cytochrome P450
F13O11.25 [imported] - Arabidopsis thaliana, partial
(69%)
Length = 1695
Score = 32.3 bits (72), Expect = 0.49
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Frame = +1
Query: 49 LSVLAFPSRRITPATNCSAPFPTSEPPFPSLPNLYPLPLQTDTPSSSTIEESRKWFQE-- 106
LS L F S ++ ++ P S+PP+PSLP LY P + S + F +
Sbjct: 85 LSSLLFASSSLSEPSS-----PYSQPPYPSLPALYTSPSSQTSNCSKNQSPNLNLFSKLS 249
Query: 107 ----VVPALGILLLRLP 119
V+ +L I +L LP
Sbjct: 250 MPNMVLSSLSISVLDLP 300
>TC86135 similar to PIR|A96673|A96673 probable cytochrome P450 F13O11.25
[imported] - Arabidopsis thaliana, partial (62%)
Length = 1842
Score = 32.3 bits (72), Expect = 0.49
Identities = 19/56 (33%), Positives = 28/56 (49%), Gaps = 6/56 (10%)
Frame = +2
Query: 70 PTSEPPFPSLPNLYPLPLQTDTPSSSTIEESRKWFQE------VVPALGILLLRLP 119
P+S+PP+PSLP LY P + S + F + V+ +L I +L LP
Sbjct: 89 PSSQPPYPSLPALYTSPSSQTSNCSKNQSPNLNLFSKLSMPNMVLSSLSISVLDLP 256
>TC87215 homologue to SP|O65759|H2A_CICAR Histone H2A. [Chickpea Garbanzo]
{Cicer arietinum}, complete
Length = 723
Score = 32.3 bits (72), Expect = 0.49
Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 8/73 (10%)
Frame = -3
Query: 47 FLLSVLAFPSRRITPATNCS--------APFPTSEPPFPSLPNLYPLPLQTDTPSSSTIE 98
FLLS+ AFP+ T A S AP PT P+L NL LP P+ +E
Sbjct: 316 FLLSLAAFPANSKTSAARYSRTAER*TGAPAPTRSAYLPALRNLAILPTGN*RPAFEDLE 137
Query: 99 ESRKWFQEVVPAL 111
F +P L
Sbjct: 136 TDLAAFGLPLPPL 98
>TC87216 homologue to SP|O65759|H2A_CICAR Histone H2A. [Chickpea Garbanzo]
{Cicer arietinum}, complete
Length = 628
Score = 32.3 bits (72), Expect = 0.49
Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 8/73 (10%)
Frame = -2
Query: 47 FLLSVLAFPSRRITPATNCS--------APFPTSEPPFPSLPNLYPLPLQTDTPSSSTIE 98
FLLS+ AFP+ T A S AP PT P+L NL LP P+ +E
Sbjct: 327 FLLSLAAFPANSKTSAARYSRTAER*TGAPAPTRSAYLPALRNLAILPTGN*RPAFEDLE 148
Query: 99 ESRKWFQEVVPAL 111
F +P L
Sbjct: 147 TDLAAFGLPLPPL 109
>TC86786 similar to GP|8778315|gb|AAF79324.1| F14J16.29 {Arabidopsis
thaliana}, partial (32%)
Length = 707
Score = 31.2 bits (69), Expect = 1.1
Identities = 19/54 (35%), Positives = 27/54 (49%)
Frame = +1
Query: 68 PFPTSEPPFPSLPNLYPLPLQTDTPSSSTIEESRKWFQEVVPALGILLLRLPSL 121
P PT+ PP PS+PN+ Q + P TI K +P+L + +PSL
Sbjct: 211 PKPTTLPPLPSIPNM----PQGNLPPLPTIPSMPKLTMPPLPSLPTNIPTIPSL 360
>TC86785 similar to GP|13876504|gb|AAK43480.1 hypothetical protein
{Arabidopsis thaliana}, partial (8%)
Length = 663
Score = 31.2 bits (69), Expect = 1.1
Identities = 19/54 (35%), Positives = 27/54 (49%)
Frame = +3
Query: 68 PFPTSEPPFPSLPNLYPLPLQTDTPSSSTIEESRKWFQEVVPALGILLLRLPSL 121
P PT+ PP PS+PN+ Q + P TI K +P+L + +PSL
Sbjct: 183 PKPTTLPPLPSIPNM----PQGNLPPLPTIPSMPKLTMPPLPSLPTNIPTIPSL 332
>TC84294 homologue to GP|168765|gb|AAA33563.1|| plasma membrane H+ ATPase
{Neurospora crassa}, partial (29%)
Length = 815
Score = 30.8 bits (68), Expect = 1.4
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 15/89 (16%)
Frame = +2
Query: 38 SSISTPRDAFLLSVLAFPSRR---------------ITPATNCSAPFPTSEPPFPSLPNL 82
S +STPR + LL P+RR TPA + P S PS P+
Sbjct: 104 SPVSTPRTSCLLPAWPLPARRRVWTPSTRPS*SLCATTPAPSPFCPSTRSSSSSPSTPSP 283
Query: 83 YPLPLQTDTPSSSTIEESRKWFQEVVPAL 111
LP ++ P+ + SR V+P+L
Sbjct: 284 RRLPPSSNPPTVRRLPASR-----VLPSL 355
>BQ136398 weakly similar to GP|15145286|gb| Hypothetical protein C27H5.3
{Caenorhabditis elegans}, partial (10%)
Length = 856
Score = 30.4 bits (67), Expect = 1.9
Identities = 15/27 (55%), Positives = 16/27 (58%)
Frame = +1
Query: 70 PTSEPPFPSLPNLYPLPLQTDTPSSST 96
PT PPFP L+PLPL T P ST
Sbjct: 511 PTPSPPFP----LFPLPLPTPPPPFST 579
>CB891664 similar to GP|3341693|gb| unknown protein {Arabidopsis thaliana},
partial (26%)
Length = 580
Score = 30.4 bits (67), Expect = 1.9
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 50 SVLAFPSRRITPATN-CSAPFPTSEPPFPS 78
S L P RR P+ + CS P+PT PP PS
Sbjct: 63 SSLRSPHRRPPPSRSPCSTPYPTLHPPSPS 152
>TC77213 similar to PIR|T10861|T10861 phaseolin G-box binding protein PG1 -
kidney bean, partial (70%)
Length = 2391
Score = 30.0 bits (66), Expect = 2.4
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = -3
Query: 27 ENGKQTRLEIDSSISTPRDAFLLSVLAFPSRRITPATNCSAPFPTSEPPFPSLPNLYPL- 85
E+GK T E++ SI P LL + F +PATNC P + PFP + L+ L
Sbjct: 1384 EDGKTTP-EVNESI--PSSMLLLDIGDFLFLFSSPATNCD--*PEKKVPFPVI*ELFLLS 1220
Query: 86 PLQTDTPSSSTIEESR 101
P +P S IE +
Sbjct: 1219 PKLRISPDSGFIEPEK 1172
>TC86784 similar to GP|8778315|gb|AAF79324.1| F14J16.29 {Arabidopsis
thaliana}, partial (18%)
Length = 661
Score = 30.0 bits (66), Expect = 2.4
Identities = 30/113 (26%), Positives = 50/113 (43%), Gaps = 9/113 (7%)
Frame = +2
Query: 18 SSHFTSLLRENGKQTRLEIDSSISTPRDAFL---LSVLAFPSRRITPATNCSAPF----- 69
+S +T++L + + RL + SS S L +S ++ +R + T + P
Sbjct: 2 NSLYTNILLSSYQFIRLSMASSKSFIIALLLVVTMSSMSLEARHLLQTTQPNLPNIPNLP 181
Query: 70 -PTSEPPFPSLPNLYPLPLQTDTPSSSTIEESRKWFQEVVPALGILLLRLPSL 121
PT+ PP PS+PN+ Q + P TI K +P+ +PSL
Sbjct: 182 NPTTLPPLPSIPNM----PQGNLPPLPTIPSMPKLTMPPLPSFPTNFPTIPSL 328
>BQ137258 similar to GP|5917666|gb| extensin-like protein {Zea mays}, partial
(3%)
Length = 1053
Score = 29.6 bits (65), Expect = 3.2
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 11/98 (11%)
Frame = -2
Query: 6 CQSNICTVTCFLSSHFTSLLRENGKQTRLEIDSSISTPRDAFLLSV-----------LAF 54
C S+IC F+S + LR + + L +D ++S P + S+ L
Sbjct: 410 CLSSICA---FVSLVVRADLRYSALSSSLRLDFALSFPGLSLGGSLSCHSLAPSRPCLLI 240
Query: 55 PSRRITPATNCSAPFPTSEPPFPSLPNLYPLPLQTDTP 92
PS ++ C PT+ PP P LP+ PLP + P
Sbjct: 239 PSLPLSFTFCCFRVRPTAPPPQPLLPS--PLPRSSTAP 132
>TC79702 MtN14
Length = 973
Score = 29.6 bits (65), Expect = 3.2
Identities = 15/41 (36%), Positives = 24/41 (57%), Gaps = 2/41 (4%)
Frame = -1
Query: 156 FLSQELIAAL--LVCSFFCLFPVNERYGKHLQSINFDELFG 194
FL + L L L+C FC+F + + HL S++F++ FG
Sbjct: 334 FLDRFLCLGLFFLLCFLFCIFHRHNNFFYHLFSLSFNQRFG 212
>TC81858 similar to GP|18252179|gb|AAL61922.1 unknown protein {Arabidopsis
thaliana}, partial (9%)
Length = 748
Score = 29.6 bits (65), Expect = 3.2
Identities = 23/81 (28%), Positives = 37/81 (45%)
Frame = +1
Query: 16 FLSSHFTSLLRENGKQTRLEIDSSISTPRDAFLLSVLAFPSRRITPATNCSAPFPTSEPP 75
FLSS F S ++ ++ R+ + S F+ ++LA + P+T+ +A
Sbjct: 7 FLSSKFLSSKKKEIRKLRINSSTMSSNVAFFFVFALLATTAFGEAPSTSPTAA------- 165
Query: 76 FPSLPNLYPLPLQTDTPSSST 96
P + P P T TP SST
Sbjct: 166-PKASHAAPAPKATATPPSST 225
>TC83149 similar to GP|13561982|gb|AAK30594.1 flagelliform silk protein
{Argiope trifasciata}, partial (3%)
Length = 1177
Score = 29.3 bits (64), Expect = 4.2
Identities = 20/54 (37%), Positives = 24/54 (44%)
Frame = +3
Query: 39 SISTPRDAFLLSVLAFPSRRITPATNCSAPFPTSEPPFPSLPNLYPLPLQTDTP 92
S STPR + P TP+T+ +AP PT P P L P P TP
Sbjct: 303 SPSTPRPS--------P*TPATPSTSPTAPLPTPPPRTTLPPALTPRPPSPSTP 440
>BQ144306 weakly similar to GP|23093252|gb| CG13731-PA {Drosophila
melanogaster}, partial (4%)
Length = 1261
Score = 29.3 bits (64), Expect = 4.2
Identities = 15/29 (51%), Positives = 18/29 (61%), Gaps = 1/29 (3%)
Frame = -3
Query: 69 FPTSEPPFPSLPNL-YPLPLQTDTPSSST 96
FPT PP PS P+ PLP T TP+ +T
Sbjct: 515 FPTLPPPAPSSPHSPPPLPQTTPTPTPTT 429
>BQ751848 homologue to GP|22830599|db ORF1 {Oryza sativa (japonica
cultivar-group)}, partial (1%)
Length = 486
Score = 29.3 bits (64), Expect = 4.2
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 65 CSAPFPTSEPPFPSLPNLYPLPLQTDTPSSSTIEE 99
C P SEPP+PS P P+ + P S ++E
Sbjct: 156 CRRPRSQSEPPWPSRPGPPPIHVGVAAPFPSRVQE 260
>TC91651 SP|P40389|UV22_SCHPO UV-induced protein uvi22. [Fission yeast]
{Schizosaccharomyces pombe}, partial (3%)
Length = 655
Score = 28.9 bits (63), Expect = 5.4
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 466 GGDPEVKTIIQWLAASQALRPFIAYYTFRLEALHNIDKVAHWILS 510
GGD EV + + + P I+ +T L LH++D + H + S
Sbjct: 17 GGDEEVMSEVHLGCPPRFSGPHISRFTISLPLLHDVDHIKHILSS 151
>TC83836 GP|21618075|gb|AAM67125.1 unknown {Arabidopsis thaliana}, partial
(6%)
Length = 915
Score = 28.9 bits (63), Expect = 5.4
Identities = 17/43 (39%), Positives = 23/43 (52%), Gaps = 2/43 (4%)
Frame = +3
Query: 49 LSVLAFPSRRITPATNCSAP--FPTSEPPFPSLPNLYPLPLQT 89
LS + RR P ++ AP FPT PP P+ P + PL +T
Sbjct: 60 LSAITSIRRRSPPISS*LAPLLFPTPPPPPPTTPPVTPLRFRT 188
>TC85251 homologue to PIR|JQ2128|JQ2128 metallothionein - soybean, partial
(93%)
Length = 1554
Score = 28.5 bits (62), Expect = 7.1
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 11/46 (23%)
Frame = -2
Query: 55 PSRRITPATNCSAP-----------FPTSEPPFPSLPNLYPLPLQT 89
P+ +I PA++ P PT PP P P + P P+QT
Sbjct: 701 PAPKIAPASSPKVPPPQPPKSSPVSTPTLPPPLPPPPKISPTPVQT 564
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.321 0.138 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,469,238
Number of Sequences: 36976
Number of extensions: 302148
Number of successful extensions: 1974
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 1919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1961
length of query: 558
length of database: 9,014,727
effective HSP length: 101
effective length of query: 457
effective length of database: 5,280,151
effective search space: 2413029007
effective search space used: 2413029007
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0057b.8