BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0057b.6
(396 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG455782 167 7e-42
TC91686 similar to GP|22136246|gb|AAM91201.1 unknown protein {Ar... 33 0.15
TC84206 32 0.56
TC93321 similar to GP|4586576|dbj|BAA76420.1 multidrug resistanc... 32 0.56
AW696680 similar to GP|19774149|gb NBS-LRR-Toll resistance gene ... 32 0.56
TC89696 similar to GP|10177426|dbj|BAB10711. GATA-binding transc... 31 0.73
TC80744 similar to GP|4587575|gb|AAD25806.1| Belongs to PF|01121... 30 1.2
TC87925 similar to GP|13605495|gb|AAK32741.1 At1g65410/T8F5_19 {... 29 2.8
TC86616 similar to GP|7643796|gb|AAF65513.1| GTP-binding protein... 29 2.8
TC86744 similar to GP|15810647|gb|AAL07248.1 unknown protein {Ar... 29 2.8
AW560126 similar to GP|15292753|gb putative ABC transporter prot... 29 2.8
TC79363 similar to GP|12322790|gb|AAG51387.1 unknown protein; 10... 29 3.6
TC90900 weakly similar to PIR|D96753|D96753 Similar to disease r... 28 4.7
TC78098 similar to PIR|A84670|A84670 probable nucleotide-binding... 28 4.7
TC90235 similar to GP|9759497|dbj|BAB10747.1 gene_id:MDK4.6~pir|... 28 6.2
TC92377 similar to GP|19774149|gb|AAL99051.1 NBS-LRR-Toll resist... 28 6.2
TC77058 similar to GP|10176907|dbj|BAB10100. ABC transporter {Ar... 28 6.2
BQ752271 homologue to PIR|B85725|B85 probable fimbrial usher pro... 28 6.2
AL370807 weakly similar to PIR|G84487|G84 probable DNA replicati... 28 8.1
BF651093 homologue to PIR|D96753|D96 Similar to disease resistan... 28 8.1
>BG455782
Length = 534
Score = 167 bits (423), Expect = 7e-42
Identities = 79/97 (81%), Positives = 86/97 (88%)
Frame = +2
Query: 300 ISSSMVHDSPMDSNVPSLFAIPFKKKDENPRAQHGSYISALWKLRDQILSMKSPSFTRPV 359
+ SMVH SP+DS+ +LF IPFKKK+ENPRAQH SYISALWKLRDQILSMKSPSF RPV
Sbjct: 8 VPPSMVHGSPLDSDTLNLFTIPFKKKEENPRAQHESYISALWKLRDQILSMKSPSFRRPV 187
Query: 360 SEREWLKNSAKIWEQVKNSPTMLEYCRTLQQSGMFRR 396
SEREWLKNS KIWEQVK SPT+LEYCRTLQ SGM+RR
Sbjct: 188 SEREWLKNSXKIWEQVKKSPTILEYCRTLQHSGMYRR 298
>TC91686 similar to GP|22136246|gb|AAM91201.1 unknown protein {Arabidopsis
thaliana}, partial (26%)
Length = 669
Score = 33.5 bits (75), Expect = 0.15
Identities = 19/62 (30%), Positives = 32/62 (50%)
Frame = +1
Query: 69 FLTENTDFTVIGVIGPPGVGKSTIMNELYGFDSSSPGMLPPFATQSEENRAMARHCSTGI 128
+L + V+ ++GP GKST+MN L+ +S + F +S+ + + TGI
Sbjct: 88 WLIPGLSYAVVAIMGPQSSGKSTLMNHLF---HTSFREMDAFRGRSQTTKGIWIAKCTGI 258
Query: 129 EP 130
EP
Sbjct: 259 EP 264
>TC84206
Length = 680
Score = 31.6 bits (70), Expect = 0.56
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Frame = +3
Query: 209 HLMLTVDLLKHGIPDPSLLASSHSQSSSSGHEKDNKLSGREYMATPVFVHTKLHDQEFTP 268
H +++ + L HG+ + SS H K+ + +E + +P+ T H E
Sbjct: 285 HELISGEHLTHGLSQALGYQIKYEPSSDPSHVKEKHI--KESVTSPIEASTVSHLFELIK 458
Query: 269 KN---FVQLRKTLIQYFKPSSFVREHAEHKPE 297
+N +V T I+ +KP + EHK E
Sbjct: 459 ENKFNYVSPHSTDIEKWKPKTVEEFFLEHKDE 554
>TC93321 similar to GP|4586576|dbj|BAA76420.1 multidrug resistance protein
{Cicer arietinum}, partial (45%)
Length = 431
Score = 31.6 bits (70), Expect = 0.56
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = +2
Query: 47 PSVASLNLLSDSWDFHIDRFLPFLTENTDFTVIGVIGPPGVGKSTI---MNELYGFDSSS 103
P + NL +S D + + V+G+IGP G GKST+ MN L+ SSS
Sbjct: 98 PKIQIKNLRKESDDGKLQILKGITVDIPKGMVVGIIGPSGSGKSTLLRAMNRLWEPPSSS 277
>AW696680 similar to GP|19774149|gb NBS-LRR-Toll resistance gene analog
protein {Medicago sativa}, partial (96%)
Length = 641
Score = 31.6 bits (70), Expect = 0.56
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +2
Query: 62 HIDRF--LPFLTENTDFTVIGVIGPPGVGKSTIMNELYG 98
HID+ L L D V+G+ G G+GK+T+ LYG
Sbjct: 44 HIDKVANLLLLDSIDDVRVVGICGMGGIGKTTLATALYG 160
>TC89696 similar to GP|10177426|dbj|BAB10711. GATA-binding transcription
factor-like protein {Arabidopsis thaliana}, partial
(25%)
Length = 806
Score = 31.2 bits (69), Expect = 0.73
Identities = 17/46 (36%), Positives = 24/46 (51%)
Frame = +2
Query: 215 DLLKHGIPDPSLLASSHSQSSSSGHEKDNKLSGREYMATPVFVHTK 260
DLLKH + P L S+ S +S++ LSG +M PV +K
Sbjct: 320 DLLKHQMTSPMLENSTSSSNSNNSSNSITLLSGYNHMKFPVRARSK 457
>TC80744 similar to GP|4587575|gb|AAD25806.1| Belongs to PF|01121
Uncharacterized protein family UPF0038 containing
ATP/GTP binding domain. ESTs, partial (77%)
Length = 1203
Score = 30.4 bits (67), Expect = 1.2
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Frame = +3
Query: 55 LSDSWDFHIDRFLP----FLTENTDFTVIGVIGPPGVGKSTIMNEL 96
+ + +D + R +P L N F V G+ GPPG GKSTI +E+
Sbjct: 285 VDEIYDTLVKRIMPPASVSLNPNYKFFV-GLAGPPGAGKSTIAHEV 419
>TC87925 similar to GP|13605495|gb|AAK32741.1 At1g65410/T8F5_19 {Arabidopsis
thaliana}, partial (82%)
Length = 1699
Score = 29.3 bits (64), Expect = 2.8
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 79 IGVIGPPGVGKSTIMNELYGFDSSSPG 105
+G+IGP G GKSTI+ + G + G
Sbjct: 550 VGIIGPSGTGKSTILKIIAGLLAPDKG 630
>TC86616 similar to GP|7643796|gb|AAF65513.1| GTP-binding protein {Capsicum
annuum}, partial (57%)
Length = 886
Score = 29.3 bits (64), Expect = 2.8
Identities = 13/29 (44%), Positives = 17/29 (57%)
Frame = +2
Query: 68 PFLTENTDFTVIGVIGPPGVGKSTIMNEL 96
P L + IG++G P VGKST+ N L
Sbjct: 152 PILGRFSSHLKIGIVGLPNVGKSTLFNTL 238
>TC86744 similar to GP|15810647|gb|AAL07248.1 unknown protein {Arabidopsis
thaliana}, partial (96%)
Length = 1765
Score = 29.3 bits (64), Expect = 2.8
Identities = 15/28 (53%), Positives = 21/28 (74%)
Frame = -1
Query: 221 IPDPSLLASSHSQSSSSGHEKDNKLSGR 248
IP+P+ +AS+H SSSG K+NKLS +
Sbjct: 850 IPNPAAMASTH--FSSSGSLKNNKLSSK 773
>AW560126 similar to GP|15292753|gb putative ABC transporter protein
{Arabidopsis thaliana}, partial (17%)
Length = 727
Score = 29.3 bits (64), Expect = 2.8
Identities = 10/21 (47%), Positives = 16/21 (75%)
Frame = +3
Query: 78 VIGVIGPPGVGKSTIMNELYG 98
++ ++GP G GKST++N L G
Sbjct: 411 ILAILGPSGSGKSTLLNSLAG 473
>TC79363 similar to GP|12322790|gb|AAG51387.1 unknown protein; 108050-105786
{Arabidopsis thaliana}, partial (32%)
Length = 976
Score = 28.9 bits (63), Expect = 3.6
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = +1
Query: 81 VIGPPGVGKSTIMNE 95
VIGPPGVGK+T++ E
Sbjct: 811 VIGPPGVGKTTLIRE 855
>TC90900 weakly similar to PIR|D96753|D96753 Similar to disease resistance
proteins [imported] - Arabidopsis thaliana, partial (7%)
Length = 826
Score = 28.5 bits (62), Expect = 4.7
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +2
Query: 63 IDRFLPFLTENTDFTVIGVIGPPGVGKSTIMNELYGFDSS 102
++ L +++ + V+G+ G G+GK+T+ + LY SS
Sbjct: 176 LESLLKLSSDDDELRVVGIWGMAGIGKTTLASVLYDRISS 295
>TC78098 similar to PIR|A84670|A84670 probable nucleotide-binding protein
[imported] - Arabidopsis thaliana, partial (40%)
Length = 1102
Score = 28.5 bits (62), Expect = 4.7
Identities = 11/29 (37%), Positives = 19/29 (64%)
Frame = +3
Query: 70 LTENTDFTVIGVIGPPGVGKSTIMNELYG 98
++ ++ V+G +G P VGKS+ +N L G
Sbjct: 1014 VSSSSSHVVVGFVGYPNVGKSSTINALVG 1100
>TC90235 similar to GP|9759497|dbj|BAB10747.1
gene_id:MDK4.6~pir||T05759~strong similarity to unknown
protein {Arabidopsis thaliana}, partial (56%)
Length = 815
Score = 28.1 bits (61), Expect = 6.2
Identities = 14/54 (25%), Positives = 27/54 (49%)
Frame = -3
Query: 75 DFTVIGVIGPPGVGKSTIMNELYGFDSSSPGMLPPFATQSEENRAMARHCSTGI 128
D + + GPP + S + +++ S++ LP F Q ++ AMA C + +
Sbjct: 297 DENISTITGPPRLCSSVVTSDVMLPPSAALSRLPLFPKQVQKRGAMALFCQSAV 136
>TC92377 similar to GP|19774149|gb|AAL99051.1 NBS-LRR-Toll resistance gene
analog protein {Medicago sativa}, partial (57%)
Length = 945
Score = 28.1 bits (61), Expect = 6.2
Identities = 13/29 (44%), Positives = 19/29 (64%), Gaps = 1/29 (3%)
Frame = +1
Query: 70 LTENTDFT-VIGVIGPPGVGKSTIMNELY 97
L E+TD V+G+ G G+GK+T+ LY
Sbjct: 235 LLESTDIIQVVGIYGMGGIGKTTLATALY 321
>TC77058 similar to GP|10176907|dbj|BAB10100. ABC transporter {Arabidopsis
thaliana}, partial (95%)
Length = 2396
Score = 28.1 bits (61), Expect = 6.2
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Frame = +3
Query: 72 ENTDFTV-----IGVIGPPGVGKSTIMNELYGFDSSSPGML 107
+N DF V I ++GP G GKST++ + G S GM+
Sbjct: 1320 KNIDFGVDLDSRIALVGPNGAGKSTLLKLMTGDLFPSDGMV 1442
>BQ752271 homologue to PIR|B85725|B85 probable fimbrial usher protein Z2203
[imported] - Escherichia coli (strain O157:H7), partial
(29%)
Length = 796
Score = 28.1 bits (61), Expect = 6.2
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Frame = -2
Query: 336 YISALWKLRDQILSMKSPSFTRPVSERE----WLKNSAKIWEQVKNSPTMLEYCRTLQQS 391
++SA WKLR I +SP V++R W+K +W + L ++S
Sbjct: 612 HLSAAWKLRYDIFQCQSPKLLEHVTQRPANIIWIK--CAVW*YYDFAELQLFQ*YMAKRS 439
Query: 392 GMFRR 396
G F R
Sbjct: 438 GSFTR 424
>AL370807 weakly similar to PIR|G84487|G84 probable DNA replication licensing
factor mcm5 [imported] - Arabidopsis thaliana, partial
(16%)
Length = 432
Score = 27.7 bits (60), Expect = 8.1
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -3
Query: 290 EHAEHKPEEHISSSMVHDSPMDSNVPSLFAIPFKKKDENPRAQHG 334
E +EH E+H+ P SN P F+ ++E R Q G
Sbjct: 421 EESEHHQEQHLPYHQYLQQPSSSNSPKPAPPQFRTEEEYRREQIG 287
>BF651093 homologue to PIR|D96753|D96 Similar to disease resistance proteins
[imported] - Arabidopsis thaliana, partial (1%)
Length = 511
Score = 27.7 bits (60), Expect = 8.1
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Frame = +1
Query: 41 QHRSRLPSVASLNLLSDSWDFHIDRF-------LPFLTENTDFTVIGVIGPPGVGKSTIM 93
+H + + A+L + FHI+ + L + ++G+ G G+GKSTI
Sbjct: 160 EHITHVVKCATLIVSKKRASFHIESIHSRAQDVIQLLKXSKCPLLVGIWGMTGIGKSTIA 339
Query: 94 NELY 97
N +Y
Sbjct: 340 NVIY 351
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.316 0.132 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,083,221
Number of Sequences: 36976
Number of extensions: 173117
Number of successful extensions: 1019
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of query: 396
length of database: 9,014,727
effective HSP length: 98
effective length of query: 298
effective length of database: 5,391,079
effective search space: 1606541542
effective search space used: 1606541542
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Lotus: description of TM0057b.6