BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0051a.1
(226 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BM813055 65 2e-11
TC87179 similar to PIR|T45627|T45627 replication factor A-like p... 35 0.030
TC90756 similar to PIR|T41394|T41394 hypothetical serine-rich pr... 32 0.26
AJ498486 31 0.34
TC78324 similar to GP|8567798|gb|AAF76370.1| unknown protein {Ar... 31 0.34
BQ144402 homologue to GP|9453857|dbj| EBNA-1 {Cynomolgus Epstein... 30 0.75
TC89064 similar to GP|17381038|gb|AAL36331.1 putative cyclophyli... 30 0.98
BG583511 similar to PIR|C96703|C96 hypothetical protein T23K23.1... 28 2.2
TC87518 weakly similar to PIR|E96714|E96714 probable DNA-binding... 28 2.9
TC79769 homologue to GP|7158882|gb|AAF37579.1| heat shock transc... 27 4.9
TC78151 similar to GP|22655006|gb|AAM98094.1 At1g76400/F15M4_10 ... 27 8.3
>BM813055
Length = 549
Score = 65.1 bits (157), Expect = 2e-11
Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 3/142 (2%)
Frame = +3
Query: 34 IIYATIKKIESTNDWYYHDC-ECNSAAYSDGAQYYCEKCNKHVTPTIRYKLLLNVADDTA 92
I+ ATI IES WYY C +C + + YC KCN R+KL + V D+T
Sbjct: 75 IVLATICGIESEYSWYYQACTKCAGRVRTVAGRLYCGKCNTGRNAVPRFKLHVQVMDNTG 254
Query: 93 SATFTVFYREGCYLMNKKGNEILEKMEKIGSMEHPPQEIVDLVHKEFLFKVE--GKNICG 150
S +F +F R +N+ ++++ S P ++ V K LFKVE N+
Sbjct: 255 STSFILFDRNVSSYVNRTVQDMIDAQPNNSS--DYPSDLDSFVGKRMLFKVEVSDGNLLH 428
Query: 151 RWFNPAFNVLKICKDQQIISKF 172
W N + V + ++ +I++F
Sbjct: 429 NWRN--YAVKRTTAEEDVINQF 488
>TC87179 similar to PIR|T45627|T45627 replication factor A-like protein -
Arabidopsis thaliana, partial (84%)
Length = 2245
Score = 34.7 bits (78), Expect = 0.030
Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 3/103 (2%)
Frame = +2
Query: 28 QQRTIFIIYATIKKIESTNDWYYHDCE-CNSAAYSD-GAQYYCEKCNKH-VTPTIRYKLL 84
++ F I I I++ +Y C+ CN D A Y+CE C K+ RY ++
Sbjct: 1577 EKPAFFSIRGNISFIKADQAMWYRACKTCNKKVTEDMDAGYWCESCQKNDAECNFRYIMV 1756
Query: 85 LNVADDTASATFTVFYREGCYLMNKKGNEILEKMEKIGSMEHP 127
V+D + A + F E ++ E L+ ++ E+P
Sbjct: 1757 AKVSDASGEAFVSTFNEEAEKIIGCPAEE-LDNLKSQDGEENP 1882
>TC90756 similar to PIR|T41394|T41394 hypothetical serine-rich protein -
fission yeast (Schizosaccharomyces pombe), partial (7%)
Length = 1430
Score = 31.6 bits (70), Expect = 0.26
Identities = 13/41 (31%), Positives = 23/41 (55%), Gaps = 1/41 (2%)
Frame = -1
Query: 34 IIYATIKKIESTNDWYYHDC-ECNSAAYSDGAQYYCEKCNK 73
+++ATI IE+ + WYY C +C + +C +CN+
Sbjct: 653 LLFATICDIEAEHWWYYEACTKCAGRVTIVAGKMFCGRCNQ 531
>AJ498486
Length = 467
Score = 31.2 bits (69), Expect = 0.34
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = +1
Query: 35 IYATIKKIESTNDWYYHDCECNSAAYSDGAQYYCEKCNKHVTPTIRYKLLLNVADDTASA 94
+ ATI + E++ +WY+ C +C VT R+KL + V DDT S
Sbjct: 85 VLATICEPETSLEWYFRSCT---------------QCASLVTVVPRFKLHVIVMDDTGST 219
Query: 95 T 95
T
Sbjct: 220 T 222
>TC78324 similar to GP|8567798|gb|AAF76370.1| unknown protein {Arabidopsis
thaliana}, complete
Length = 1108
Score = 31.2 bits (69), Expect = 0.34
Identities = 22/66 (33%), Positives = 33/66 (49%), Gaps = 1/66 (1%)
Frame = +1
Query: 153 FNPAFNVLKICKDQQIISKFKTKTITKSVK-RNTPPPILEDSNTPIKRRSDEGSITEVVG 211
FN FN + K +I F+T VK + PPP +ED+N I +R D ++ E +
Sbjct: 112 FNFNFNFQRSYK---LIKSFRTMKRVFGVKAKKEPPPSIEDANERITKRGD--TVDEKIK 276
Query: 212 SNDAEM 217
D E+
Sbjct: 277 KLDVEL 294
>BQ144402 homologue to GP|9453857|dbj| EBNA-1 {Cynomolgus Epstein-Barr Virus
TsB-B6}, partial (3%)
Length = 1233
Score = 30.0 bits (66), Expect = 0.75
Identities = 15/40 (37%), Positives = 22/40 (54%), Gaps = 2/40 (5%)
Frame = -2
Query: 31 TIFI-IYATIKKIESTND-WYYHDCECNSAAYSDGAQYYC 68
TIF+ + I K+ +D W++ C NS +DG YYC
Sbjct: 566 TIFVNLGGIISKLYRVSDCWFFSFCGVNSVNKTDGRYYYC 447
>TC89064 similar to GP|17381038|gb|AAL36331.1 putative cyclophylin protein
{Arabidopsis thaliana}, partial (30%)
Length = 1125
Score = 29.6 bits (65), Expect = 0.98
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Frame = +2
Query: 84 LLNVADDTASATFTVFYREGCYLMNK--------KGNEILEKMEKIGSMEHPPQEIVDLV 135
+ N +T + F + ++ +L K KG EIL+KME++G+ + P + + +V
Sbjct: 647 MANSGPNTNGSQFFIIFKRQAHLDGKHVVFGKVTKGIEILKKMEQLGTADGKPTQPIKIV 826
>BG583511 similar to PIR|C96703|C96 hypothetical protein T23K23.13 [imported]
- Arabidopsis thaliana, partial (29%)
Length = 781
Score = 28.5 bits (62), Expect = 2.2
Identities = 15/36 (41%), Positives = 25/36 (68%)
Frame = +2
Query: 105 YLMNKKGNEILEKMEKIGSMEHPPQEIVDLVHKEFL 140
Y+++++GNE L+K+ KIGS P++ LV EF+
Sbjct: 77 YIVSRQGNETLDKVLKIGS---SPKKKSMLVVSEFI 175
>TC87518 weakly similar to PIR|E96714|E96714 probable DNA-binding protein
T6L1.19 [imported] - Arabidopsis thaliana, partial (41%)
Length = 1337
Score = 28.1 bits (61), Expect = 2.9
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 177 ITKSVKRNTPPPILEDSNTPIKRRSDEGSITEVV 210
++ S +N PIL D +T I + GS TEVV
Sbjct: 500 VSPSFPKNVQNPILSDPSTTIPKGCTPGSSTEVV 601
>TC79769 homologue to GP|7158882|gb|AAF37579.1| heat shock transcription
factor {Medicago sativa}, complete
Length = 1979
Score = 27.3 bits (59), Expect = 4.9
Identities = 21/85 (24%), Positives = 43/85 (49%)
Frame = -1
Query: 107 MNKKGNEILEKMEKIGSMEHPPQEIVDLVHKEFLFKVEGKNICGRWFNPAFNVLKICKDQ 166
+N K ++ +I ++ P ++ ++ K+ +++ KN +FNP N+ K K
Sbjct: 584 LNSKTQNLINP--QIFKIKQTPNHLIYILEKKP--QIKNKNKKKLFFNPK*NLDKTPKKS 417
Query: 167 QIISKFKTKTITKSVKRNTPPPILE 191
II++ TIT S +R P+++
Sbjct: 416 LIINQ*S*TTIT*SQRRTLHNPLIK 342
>TC78151 similar to GP|22655006|gb|AAM98094.1 At1g76400/F15M4_10 {Arabidopsis
thaliana}, partial (88%)
Length = 2171
Score = 26.6 bits (57), Expect = 8.3
Identities = 20/79 (25%), Positives = 31/79 (38%)
Frame = +1
Query: 137 KEFLFKVEGKNICGRWFNPAFNVLKICKDQQIISKFKTKTITKSVKRNTPPPILEDSNTP 196
++FLF V+GK F N L I ++ K +K + + P P+ E T
Sbjct: 1087 QDFLFGVDGKRFLNISFGSPINELVI---DTLVVKVVLPEGSKDISPSVPFPVKERHETK 1257
Query: 197 IKRRSDEGSITEVVGSNDA 215
G V+ N+A
Sbjct: 1258 FSHLDIAGRPVVVLEKNNA 1314
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.318 0.134 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,939,036
Number of Sequences: 36976
Number of extensions: 119421
Number of successful extensions: 595
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of query: 226
length of database: 9,014,727
effective HSP length: 93
effective length of query: 133
effective length of database: 5,575,959
effective search space: 741602547
effective search space used: 741602547
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Lotus: description of TM0051a.1