TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0048.6
         (1124 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BE248606 homologue to SP|P15001|PHY Phytochrome A. [Garden pea] ...   238  7e-63
AW691215 homologue to GP|6502525|gb phytochrome B {Pisum sativum...   144  2e-34
CB065321 similar to GP|17980438|gb bacteriophytochrome 1 {Pseudo...   102  8e-22
BG452759 similar to GP|6502525|gb| phytochrome B {Pisum sativum}...    62  1e-09
TC87230 similar to SP|Q06215|PPO_VICFA Polyphenol oxidase A1  ch...    31  2.4
TC84821 weakly similar to GP|17065212|gb|AAL32760.1 Unknown prot...    31  2.4
TC79296 weakly similar to GP|14279169|gb|AAK58515.1 beta-1 3-glu...    29  9.0
TC83902 similar to SP|O81974|C7D8_SOYBN Cytochrome P450 71D8 (EC...    29  9.0

>BE248606 homologue to SP|P15001|PHY Phytochrome A. [Garden pea] {Pisum
            sativum}, partial (12%)
          Length = 449

 Score =  238 bits (608), Expect = 7e-63
 Identities = 121/147 (82%), Positives = 134/147 (90%)
 Frame = +1

Query: 856  KKLDVEGLVTGVFCFLQLASPELQQALHIQHLSEQTALKRLKALTYMKRQIRNPLSGIVF 915
            +K+D EGLVTGVFCFLQLASPELQQALHIQ LSEQTALKRLK LTYM+RQIRNPLSGIVF
Sbjct: 7    EKIDAEGLVTGVFCFLQLASPELQQALHIQRLSEQTALKRLKVLTYMRRQIRNPLSGIVF 186

Query: 916  SRKTLEGTDLGIEQKRLVHTSAQCQRQLSKILDDSDLDSIMDGYLDLEMAEFTLQDVLIT 975
            S K LE T+LG EQKR+V+TS+QCQRQLSKILDDSDLDSI+DGYLDLEMAEFTL +VL+T
Sbjct: 187  SSKMLENTELGTEQKRIVNTSSQCQRQLSKILDDSDLDSIIDGYLDLEMAEFTLHEVLVT 366

Query: 976  SLSQIMARSSARGIRIVNDVAEEIMVE 1002
            SLSQ+M RS+ R IRIVNDVAE I +E
Sbjct: 367  SLSQVMNRSNTRSIRIVNDVAEHIAME 447


>AW691215 homologue to GP|6502525|gb phytochrome B {Pisum sativum}, partial
           (15%)
          Length = 554

 Score =  144 bits (363), Expect = 2e-34
 Identities = 84/176 (47%), Positives = 118/176 (66%), Gaps = 5/176 (2%)
 Frame = +2

Query: 599 IDTRLSDLKIEGMQELEAVTSEMVRLIETATVPILAVDIDGLVNGWNIKIAELTGLPVGE 658
           + T +++L+++G+ EL +V  EMVRLIETAT PI AVD++G +NGWN K++ELTGL V +
Sbjct: 32  VHTHMAELELQGVDELSSVAREMVRLIETATAPIFAVDVNGRINGWNAKVSELTGLLVED 211

Query: 659 AIGKHLL-TLVEDCSTDRVKKMLDLALSGEEEKNVQFEIKTHGSKMESGPISLVVNACAS 717
           A+GK LL  LV   S + V K+L  AL GEE+KNV+ +++T G   ++  + +VVNAC+S
Sbjct: 212 AMGKSLLHDLVYKESQETVDKLLSHALKGEEDKNVEIKMRTFGPGNQNKAVFIVVNACSS 391

Query: 718 RDLRE-NVVGVCFVAQDITAQKTVMDKF---TRIEGDYKAIVQNPNPLIPPIFGTD 769
           + L +     V  + QD+T QK VMDKF   TR    Y     +PN LIPPIF +D
Sbjct: 392 KVLYK*YSWSVL*LVQDVTGQKVVMDKFH*HTR*LQGY--CT*DPNALIPPIFASD 553



 Score = 29.6 bits (65), Expect = 6.9
 Identities = 15/38 (39%), Positives = 21/38 (54%)
 Frame = +2

Query: 764 PIFGTDEFGWCCEWNPAMTKLTGWKREEVMDKMLLGEV 801
           PIF  D  G    WN  +++LTG   E+ M K LL ++
Sbjct: 128 PIFAVDVNGRINGWNAKVSELTGLLVEDAMGKSLLHDL 241


>CB065321 similar to GP|17980438|gb bacteriophytochrome 1 {Pseudomonas
           putida}, partial (29%)
          Length = 659

 Score =  102 bits (254), Expect = 8e-22
 Identities = 65/207 (31%), Positives = 113/207 (54%), Gaps = 4/207 (1%)
 Frame = +2

Query: 170 IIHRVTGSLIIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQE 229
           + HR    LI +FEP +     +T  G    Y L    ++ L    + ++E+L    V++
Sbjct: 107 LAHRHDQVLIAEFEPSR-LGSELTEQG--DYYPLVRGFVSSLHH--AETLEQLLQQSVEQ 271

Query: 230 VFELTGYDRVMAYKFHEDDHGEVIAEITKPGLEPYLGLHYPATDIPQASRFLFMKNKVRM 289
           +  +TG+ RV AY+F  + +G+V+AE+   G   YLGLH+PA+DIP+ +R L+  N++R+
Sbjct: 272 IRRITGFGRVKAYRFDAEGNGQVLAEVADAGYPRYLGLHFPASDIPRQARELYRINRIRV 451

Query: 290 IVDCHAKQVKVLIDEK----LPFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVND 345
           I D + +   ++         P D++   + LR+    HLQYM NM ++AS+ ++++V  
Sbjct: 452 IEDANYQPSPLVPGNNPRTGKPLDMSF--AALRSVSPVHLQYMRNMGTLASMSLSIMV-- 619

Query: 346 NDEDGDGSDSVQPQKRKRLWGLVVCHN 372
              DG+            LWGL++CH+
Sbjct: 620 ---DGE------------LWGLILCHH 655


>BG452759 similar to GP|6502525|gb| phytochrome B {Pisum sativum}, partial
           (7%)
          Length = 676

 Score = 62.4 bits (150), Expect = 1e-09
 Identities = 25/65 (38%), Positives = 44/65 (67%)
 Frame = +1

Query: 846 KYVECLLSVSKKLDVEGLVTGVFCFLQLASPELQQALHIQHLSEQTALKRLKALTYMKRQ 905
           K+V   L+ + +++++G + G FCFLQ+ SPELQQAL +    + +   R+K L Y+ ++
Sbjct: 403 KFVXTFLTANXRVNMDGQIIGAFCFLQIVSPELQQALTVXRQQDSSCFARMKXLXYICQE 582

Query: 906 IRNPL 910
           ++NPL
Sbjct: 583 VKNPL 597


>TC87230 similar to SP|Q06215|PPO_VICFA Polyphenol oxidase A1  chloroplast
            precursor (EC 1.10.3.1) (PPO) (Catechol oxidase). [Broad
            bean], partial (79%)
          Length = 1778

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 307  PFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNDNDEDGD 351
            PF+    GS +  PHS H Q M N++S     +  ++ D   D D
Sbjct: 1644 PFNTEFAGSFVNVPHSLHEQTMKNINSSCRFGLTDLLGDLGVDDD 1778


>TC84821 weakly similar to GP|17065212|gb|AAL32760.1 Unknown protein
           {Arabidopsis thaliana}, partial (31%)
          Length = 534

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
 Frame = -2

Query: 139 SALQKALGFAEVTL-LNPILVHCKTSGKPFYAI 170
           ++L+K LGFA + L +NP+   C+TS K F+ I
Sbjct: 146 NSLKKNLGFACINLFINPVSPSCQTSSKSFHTI 48


>TC79296 weakly similar to GP|14279169|gb|AAK58515.1 beta-1 3-glucanase-like
            protein {Olea europaea}, partial (90%)
          Length = 1710

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 18/39 (46%), Positives = 22/39 (56%)
 Frame = -3

Query: 860  VEGLVTGVFCFLQLASPELQQALHIQHLSEQTALKRLKA 898
            V GLV G FC+L LA P       I +  E++ LKR KA
Sbjct: 1183 VTGLVDGGFCWLDLAKP-------ISYDMERSVLKRPKA 1088


>TC83902 similar to SP|O81974|C7D8_SOYBN Cytochrome P450 71D8 (EC 1.14.-.-)
            (P450 CP7). [Soybean] {Glycine max}, partial (41%)
          Length = 900

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = -2

Query: 973  LITSLSQIMARSSARGIRIVNDVAEEIMVEILYGDSLRLQQVLADFLLISI 1023
            L  SLS   A S   G  I++D+A  I+V+++   +    Q+ A  LL+ I
Sbjct: 329  LNASLSSACAFSLTLGFFIISDIAHSIVVDVVSVPATNTSQITALMLLVVI 177


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.319    0.135    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,197,786
Number of Sequences: 36976
Number of extensions: 399568
Number of successful extensions: 1919
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1915
length of query: 1124
length of database: 9,014,727
effective HSP length: 106
effective length of query: 1018
effective length of database: 5,095,271
effective search space: 5186985878
effective search space used: 5186985878
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)