TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0046a.3
         (160 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC90270 similar to PIR|B86418|B86418 hypothetical protein AAG126...   267  1e-72
TC87163 similar to PIR|T07661|T07661 maturation protein PM3 - so...   103  4e-23
TC78454 homologue to GP|15809944|gb|AAL06899.1 AT5g21070/T10F18_...    30  0.32
TC77928 similar to GP|14042498|dbj|BAB55272. unnamed protein pro...    29  0.72
TC87855 similar to GP|15081801|gb|AAK82555.1 AT5g41350/MYC6_6 {A...    28  1.6
BQ143960 weakly similar to SP|P21997|SSGP_ Sulfated surface glyc...    27  2.7
TC85784 similar to GP|15131688|emb|CAC48323. 2-Cys peroxiredoxin...    27  3.6
AW697233 similar to PIR|T46230|T462 NAC2-like protein - Arabidop...    27  4.6
TC92444 homologue to GP|18254413|gb|AAL66754.1 putative copia-li...    26  6.1
TC85783 homologue to GP|15131688|emb|CAC48323. 2-Cys peroxiredox...    26  6.1
BQ141705                                                               26  7.9
CA921615 similar to PIR|T48619|T48 tRNA synthase-like protein - ...    26  7.9

>TC90270 similar to PIR|B86418|B86418 hypothetical protein AAG12626.1
           [imported] - Arabidopsis thaliana, partial (97%)
          Length = 789

 Score =  267 bits (683), Expect = 1e-72
 Identities = 132/160 (82%), Positives = 143/160 (88%)
 Frame = +1

Query: 1   MANEQMKPIATLLLGLNFCMYVIVLGIGGWAMNRAIDQGFIIGPELQLPAHFSPIFFPMG 60
           MANEQMKPIATLLL LNFCMYVIV+ IGGWAMNRAID GF I P   LPAHFSPI+FPMG
Sbjct: 76  MANEQMKPIATLLLALNFCMYVIVISIGGWAMNRAIDHGFEISPRFDLPAHFSPIYFPMG 255

Query: 61  NASTGFFVTFALIAGVVGAASAISGINHIRSWTAESLPSAASVATMAWTLTLLAMGFAWK 120
           NA+TGFFVTFALIAGVVG  S ISG+NHIRSWT+ESLPSAASVA +AW LT+LAMGF  K
Sbjct: 256 NAATGFFVTFALIAGVVGIGSLISGLNHIRSWTSESLPSAASVAAIAWALTVLAMGFGCK 435

Query: 121 EVELRIRNARLKTMEAFLIILSATQLFYIAAIHGAAAYRR 160
           E++L IRN+RLKTMEAFLIIL+ATQLFYIAAIHGAAA RR
Sbjct: 436 EIQLNIRNSRLKTMEAFLIILTATQLFYIAAIHGAAAIRR 555


>TC87163 similar to PIR|T07661|T07661 maturation protein PM3 - soybean,
           partial (93%)
          Length = 865

 Score =  103 bits (256), Expect = 4e-23
 Identities = 61/142 (42%), Positives = 83/142 (57%), Gaps = 1/142 (0%)
 Frame = +1

Query: 13  LLGLNFCMYVIVLGIGGWAMNRAIDQGFIIGPELQLPAHFSPIFFPMGNASTGFFVTFAL 72
           LL LN  MY IVLG   W +NR     FI G        + P F   GN +T FF+TF++
Sbjct: 154 LLFLNLVMYFIVLGFASWCLNR-----FINGQT------YHPSFG--GNGATMFFLTFSI 294

Query: 73  IAGVVGAASAISGINHIRSWTAESLPSAASVATMAWTLTLLAMGFAWKEVEL-RIRNARL 131
           +A V+G  S   G NH+R W ++SL SA + + +AW +T LAMG A K++ +   R  RL
Sbjct: 295 LAAVLGIVSKFMGANHLRFWRSDSLASAGATSVIAWAVTALAMGLACKQIHIGGHRGWRL 474

Query: 132 KTMEAFLIILSATQLFYIAAIH 153
           K +EAF+IIL+ TQL  +   H
Sbjct: 475 KMVEAFIIILTFTQLLCLLLTH 540


>TC78454 homologue to GP|15809944|gb|AAL06899.1 AT5g21070/T10F18_100
           {Arabidopsis thaliana}, partial (92%)
          Length = 1062

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 27/102 (26%), Positives = 49/102 (47%), Gaps = 8/102 (7%)
 Frame = +2

Query: 4   EQMKPIATLLLGLNFCMYVIV--LGIGGWA------MNRAIDQGFIIGPELQLPAHFSPI 55
           E +  +A+LLL     MY+I+  +G GG +      M +    G I+ P L   A   P+
Sbjct: 392 ETVHKLASLLLVFLGGMYIILFLMGKGGHSHSHNQPMEKMAVAGLILVPALSPCATTLPV 571

Query: 56  FFPMGNASTGFFVTFALIAGVVGAASAISGINHIRSWTAESL 97
           F  +GN+S+   +  A+I  ++   S ++ +  +  + A  L
Sbjct: 572 FLAVGNSSS--MMVLAIIVLLLSTISVMTSLVALSFYGASQL 691


>TC77928 similar to GP|14042498|dbj|BAB55272. unnamed protein product {Homo
           sapiens}, partial (4%)
          Length = 715

 Score = 29.3 bits (64), Expect = 0.72
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +2

Query: 11  TLLLGLNFCMYVIVLGIGGWAMNRAIDQGFIIG 43
           T+LLG  FC  VIVLGI G  +   + + F +G
Sbjct: 464 TILLGFLFCATVIVLGIAGCGI--LLAESFFVG 556


>TC87855 similar to GP|15081801|gb|AAK82555.1 AT5g41350/MYC6_6 {Arabidopsis
           thaliana}, partial (48%)
          Length = 1194

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 102 SVATMAWTLTLLAMGFAWKEVELRIRNARLK 132
           S+  +A T TLLA    WKEV+L +   RL+
Sbjct: 788 SLLNVAMTFTLLAFWSGWKEVKLALFVIRLR 880


>BQ143960 weakly similar to SP|P21997|SSGP_ Sulfated surface glycoprotein
          185 (SSG 185). {Volvox carteri}, partial (13%)
          Length = 1023

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 44 PELQLPAHFSPIFFPMGNASTGFFVTFALI 73
          P    P HFSPIFF        FF  F+++
Sbjct: 63 PPPSFPPHFSPIFFSPLTHFLSFFTYFSIL 152


>TC85784 similar to GP|15131688|emb|CAC48323. 2-Cys peroxiredoxin {Pisum
           sativum}, partial (86%)
          Length = 1114

 Score = 26.9 bits (58), Expect = 3.6
 Identities = 12/32 (37%), Positives = 17/32 (52%)
 Frame = -2

Query: 52  FSPIFFPMGNASTGFFVTFALIAGVVGAASAI 83
           FSP F P G  S+GF  T+     V+  +S +
Sbjct: 885 FSPGFHPAGQTSSGFSCTYCKACSVLFVSSTL 790


>AW697233 similar to PIR|T46230|T462 NAC2-like protein - Arabidopsis
           thaliana, partial (4%)
          Length = 851

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 27  IGGWAMNRAIDQGFIIGPELQLPAHFS 53
           + GW+ NR  + G I+G  L+   H+S
Sbjct: 260 VNGWSKNRDAEWGVIVGEGLERCVHWS 340


>TC92444 homologue to GP|18254413|gb|AAL66754.1 putative copia-like
           retrotransposon Hopscotch polyprotein {Zea mays},
           partial (1%)
          Length = 917

 Score = 26.2 bits (56), Expect = 6.1
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = -3

Query: 66  FFVTFALIAGVVGAASAISG--INHIRSWTAESLPSAASVATMAWTLTLLAMGFAWKEVE 123
           F++ F  +  V  +ASA +G  +  + SWT  +  +A+S +   W++T     F+W  V 
Sbjct: 876 FYLEFWEVVIVDLSASATTGRSLGVLGSWTTTATSAASSSSGGVWSVTT----FSWSTVS 709

Query: 124 LRI 126
             I
Sbjct: 708 WAI 700


>TC85783 homologue to GP|15131688|emb|CAC48323. 2-Cys peroxiredoxin {Pisum
           sativum}, partial (91%)
          Length = 1136

 Score = 26.2 bits (56), Expect = 6.1
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
 Frame = -2

Query: 52  FSPIFFPMGNASTGFFVTFALIAGVVGAASAISGINH---IRSWTAESL 97
           FSP F P G  S+GF  T+     V+  +S +  I     +  W   SL
Sbjct: 793 FSPGFHPAGQTSSGFSCTYCKAWRVLFVSSTLLPIPRLLMVECWITPSL 647


>BQ141705 
          Length = 740

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 10/45 (22%), Positives = 19/45 (42%)
 Frame = +2

Query: 86  INHIRSWTAESLPSAASVATMAWTLTLLAMGFAWKEVELRIRNAR 130
           + H+  WTA  +     +  + WTL + +    W     +I+  R
Sbjct: 155 LTHLMGWTAVPMAEPKGL*ELRWTLIMCSYAVVWWNTLTQIQMLR 289


>CA921615 similar to PIR|T48619|T48 tRNA synthase-like protein - Arabidopsis
           thaliana, partial (25%)
          Length = 803

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 10/47 (21%), Positives = 22/47 (46%)
 Frame = +3

Query: 8   PIATLLLGLNFCMYVIVLGIGGWAMNRAIDQGFIIGPELQLPAHFSP 54
           P+  + L + FC+   +  +  W +   + +  ++ P L    +FSP
Sbjct: 273 PLEQITLKIKFCLSSKLRSMSNWKIEIRLGESSMLSPLLAFSYNFSP 413


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.328    0.138    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,761,198
Number of Sequences: 36976
Number of extensions: 59012
Number of successful extensions: 392
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of query: 160
length of database: 9,014,727
effective HSP length: 88
effective length of query: 72
effective length of database: 5,760,839
effective search space: 414780408
effective search space used: 414780408
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 54 (25.4 bits)