TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0044b.1
         (221 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC86712 similar to GP|17528972|gb|AAL38696.1 putative RNA-bindin...    30  0.56
TC87324 homologue to PIR|E86217|E86217 protein T27G7.10 [importe...    28  3.6
TC78060 similar to PIR|G96669|G96669 protein F1N19.23 [imported]...    28  3.6
TC78945 similar to PIR|E96546|E96546 probable electron transport...    28  3.6
BF004365 weakly similar to GP|21539547|gb| unknown protein {Arab...    27  4.8
AW686208 similar to GP|15292697|gb putative RNA-binding protein ...    27  4.8
TC81239 weakly similar to PIR|G86367|G86367 protein F28C11.3 [im...    27  6.2
BF003861 similar to GP|1223582|emb| PAC {Arabidopsis thaliana}, ...    27  6.2
AW697076 similar to GP|16226661|gb| At2g28910/F8N16.20 {Arabidop...    27  6.2
BI309193 similar to GP|1223582|emb| PAC {Arabidopsis thaliana}, ...    27  6.2
TC84259 weakly similar to PIR|T43257|T43257 beta-1 3 exoglucanas...    27  8.1
TC76982 similar to PIR|T12198|T12198 sucrose transport protein -...    27  8.1
TC90415 similar to GP|21615421|emb|CAD33930. arabinogalactan pro...    27  8.1

>TC86712 similar to GP|17528972|gb|AAL38696.1 putative RNA-binding protein
           {Arabidopsis thaliana}, partial (51%)
          Length = 2144

 Score = 30.4 bits (67), Expect = 0.56
 Identities = 30/92 (32%), Positives = 39/92 (41%)
 Frame = +3

Query: 129 LFVDASVSQLEGVCSENTHFKGARDTHLKDMPRTKNLNLPPANRSSHGSRIPPRHRASPT 188
           +F D SV+  E V  E     G      K +PR        +N SSHGS  P     +P 
Sbjct: 324 VFADPSVA--ERVVMEKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAP-----TPI 482

Query: 189 HSQCVFVWHSEHEVQTATVTQFKNAFKKDNFG 220
            ++ +FV        T T + FKN F  D FG
Sbjct: 483 RTKKIFVGGL---ASTVTESDFKNYF--DQFG 563


>TC87324 homologue to PIR|E86217|E86217 protein T27G7.10 [imported] -
            Arabidopsis thaliana, partial (37%)
          Length = 1897

 Score = 27.7 bits (60), Expect = 3.6
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -3

Query: 165  LNLPPANRSSHGSRIPPRHRASPTHSQCVFVWHSE 199
            LN+P  N  SH SRI    +++  H  C    H +
Sbjct: 1046 LNVPEQNAQSHPSRIHVHEQSAEDHCYCKIPLHGQ 942


>TC78060 similar to PIR|G96669|G96669 protein F1N19.23 [imported] -
           Arabidopsis thaliana, partial (89%)
          Length = 1642

 Score = 27.7 bits (60), Expect = 3.6
 Identities = 13/38 (34%), Positives = 19/38 (49%)
 Frame = +3

Query: 146 THFKGARDTHLKDMPRTKNLNLPPANRSSHGSRIPPRH 183
           +H    R T ++   R K++N    N  SHG+R  P H
Sbjct: 252 SHLTRQRTTRIRRTRRRKHVNRSLGNIHSHGTRNSPTH 365


>TC78945 similar to PIR|E96546|E96546 probable electron transport flavoprotein
            [imported] - Arabidopsis thaliana, partial (74%)
          Length = 1300

 Score = 27.7 bits (60), Expect = 3.6
 Identities = 19/57 (33%), Positives = 24/57 (41%)
 Frame = -3

Query: 27   NIIPKELQISNRQYVLCFTCSEFNIFLCTRSSILKERSLRIHVIYRMNQRRKHNGDP 83
            N I K+  +SN        C   NI+ CT     +E S    V  R+N  R HN  P
Sbjct: 1145 NCISKDDTLSN--------CYTINIYACTHFIFSQEASPTTLVAPRINLLRVHNQQP 999


>BF004365 weakly similar to GP|21539547|gb| unknown protein {Arabidopsis
           thaliana}, partial (6%)
          Length = 649

 Score = 27.3 bits (59), Expect = 4.8
 Identities = 11/24 (45%), Positives = 16/24 (65%)
 Frame = -1

Query: 42  LCFTCSEFNIFLCTRSSILKERSL 65
           LC++   F+  LCTR SI+  RS+
Sbjct: 604 LCYSLCTFSAILCTRDSIMA*RSM 533


>AW686208 similar to GP|15292697|gb putative RNA-binding protein {Arabidopsis
           thaliana}, partial (27%)
          Length = 543

 Score = 27.3 bits (59), Expect = 4.8
 Identities = 22/64 (34%), Positives = 29/64 (44%)
 Frame = +3

Query: 157 KDMPRTKNLNLPPANRSSHGSRIPPRHRASPTHSQCVFVWHSEHEVQTATVTQFKNAFKK 216
           K +PR        +N SSHGS  P     +P  ++ +FV        T T + FKN F  
Sbjct: 348 KAVPRDDQNVFTRSNSSSHGSPAP-----TPIRTKKIFVGGL---ASTVTESDFKNYF-- 497

Query: 217 DNFG 220
           D FG
Sbjct: 498 DQFG 509


>TC81239 weakly similar to PIR|G86367|G86367 protein F28C11.3 [imported] -
           Arabidopsis thaliana, partial (18%)
          Length = 1002

 Score = 26.9 bits (58), Expect = 6.2
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 154 THLKDMPRTKNLNLPPANRSSHGSRIPPRHRA 185
           T+L    +  +L+LP  ++S+HGS   P+H A
Sbjct: 460 TYLNHGTKLFSLHLPT*DKSNHGSLFYPKHHA 555


>BF003861 similar to GP|1223582|emb| PAC {Arabidopsis thaliana}, partial
           (15%)
          Length = 480

 Score = 26.9 bits (58), Expect = 6.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 14  KFAFLHGVSDAQLNIIPKELQISNRQYVLCFTC 46
           K  + HG +  Q  +I K  + S  + V CF+C
Sbjct: 387 KSKYKHGTNSYQFKLIAKSSRASTWRIVCCFSC 289


>AW697076 similar to GP|16226661|gb| At2g28910/F8N16.20 {Arabidopsis
           thaliana}, partial (21%)
          Length = 783

 Score = 26.9 bits (58), Expect = 6.2
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
 Frame = -2

Query: 36  SNRQYVLCFTCSEF-----NIFLCTRSSILKERSLRIHVIYRMNQRRKHNGDPANTATPQ 90
           S+R  +    CSE      N+F+C   + +   S R HV++ +     H   P     P 
Sbjct: 653 SSRVRIRSLICSEHDLSHVNLFVCASRADVSRASPRHHVLFSIRLSLHHPSPPITRHPPI 474

Query: 91  P 91
           P
Sbjct: 473 P 471


>BI309193 similar to GP|1223582|emb| PAC {Arabidopsis thaliana}, partial
           (31%)
          Length = 631

 Score = 26.9 bits (58), Expect = 6.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 14  KFAFLHGVSDAQLNIIPKELQISNRQYVLCFTC 46
           K  + HG +  Q  +I K  + S  + V CF+C
Sbjct: 197 KSKYKHGTNSYQFKLIAKSSRASTWRIVCCFSC 295


>TC84259 weakly similar to PIR|T43257|T43257 beta-1 3 exoglucanase (EC
           3.2.1.-) precursor - fungus (Trichoderma harzianum),
           partial (8%)
          Length = 788

 Score = 26.6 bits (57), Expect = 8.1
 Identities = 17/45 (37%), Positives = 23/45 (50%), Gaps = 8/45 (17%)
 Frame = -2

Query: 72  RMNQRRK---HNGDPANTATPQPSGVAATPIATFY-----CQPPK 108
           R   RR+    +G PA  A P PS  AATP+  ++     C PP+
Sbjct: 520 RSTARRRTQPRSGSPARAA-PTPSRTAATPLRPWHSPAGPCSPPQ 389


>TC76982 similar to PIR|T12198|T12198 sucrose transport protein - fava bean,
           partial (40%)
          Length = 1085

 Score = 26.6 bits (57), Expect = 8.1
 Identities = 11/17 (64%), Positives = 12/17 (69%)
 Frame = -3

Query: 160 PRTKNLNLPPANRSSHG 176
           P TK   LPP NR+SHG
Sbjct: 567 PTTKAGRLPPPNRASHG 517


>TC90415 similar to GP|21615421|emb|CAD33930. arabinogalactan protein {Cicer
           arietinum}, complete
          Length = 421

 Score = 26.6 bits (57), Expect = 8.1
 Identities = 13/41 (31%), Positives = 22/41 (52%), Gaps = 5/41 (12%)
 Frame = +1

Query: 36  SNRQYVLCF--TCSEFNIFLCTRS---SILKERSLRIHVIY 71
           S++ Y+ C+   CS +N FLC  S   S L   ++++   Y
Sbjct: 166 SSKSYIRCYYSLCSNYNCFLCCSSFWTSFLNLSTMKLQYAY 288


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.323    0.135    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,209,204
Number of Sequences: 36976
Number of extensions: 136881
Number of successful extensions: 907
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of query: 221
length of database: 9,014,727
effective HSP length: 92
effective length of query: 129
effective length of database: 5,612,935
effective search space: 724068615
effective search space used: 724068615
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)