BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0043b.1
(188 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BQ137719 42 1e-04
BQ137238 33 0.086
TC80014 weakly similar to GP|21536784|gb|AAM61116.1 unknown {Ara... 29 0.95
BE240089 29 1.2
TC81146 similar to GP|13543783|gb|AAH06040.1 Unknown (protein fo... 28 2.1
TC85909 similar to GP|13277342|emb|CAC34417. Germin-like protein... 28 2.1
BG582163 similar to GP|14326582|gb| At1g67850/F12A21_2 {Arabidop... 27 3.6
BF636815 weakly similar to GP|21593423|gb unknown {Arabidopsis t... 27 3.6
TC91327 similar to GP|22597168|gb|AAN03471.1 unknown protein {Gl... 27 3.6
TC89727 similar to GP|7453540|gb|AAF62871.1| Solh protein {Mus m... 27 3.6
TC81195 similar to GP|15810597|gb|AAL07186.1 unknown protein {Ar... 27 3.6
TC88887 weakly similar to GP|6523547|emb|CAB62280.1 hydroxyproli... 27 4.7
TC86948 similar to GP|13194796|gb|AAK15560.1 unknown protein {Ar... 27 4.7
TC88824 similar to PIR|T47552|T47552 hypothetical protein F8J2.1... 27 4.7
BQ150994 similar to GP|22122173|dbj preproneuropeptide B {Homo s... 27 6.1
TC89698 similar to GP|11967861|emb|CAC19488. putative serine car... 27 6.1
BF641536 27 6.1
TC87220 similar to GP|9758584|dbj|BAB09197.1 gb|AAC80623.1~gene_... 26 8.0
TC86867 similar to GP|9294199|dbj|BAB02101.1 gb|AAF04893.1~gene_... 26 8.0
BQ137028 similar to GP|4914334|gb|A F14N23.20 {Arabidopsis thali... 26 8.0
>BQ137719
Length = 469
Score = 42.4 bits (98), Expect = 1e-04
Identities = 22/76 (28%), Positives = 43/76 (55%), Gaps = 2/76 (2%)
Frame = +2
Query: 27 MTQLSQVWTSLLLRNIWPSLHVTSLPVTKENLLYSILEGHSVDIAAVMSNAIADAIQRDA 86
+T L++VW +LR + P +V+ L + K NLL +IL+G V++ ++++ + +
Sbjct: 29 LTPLAKVWAMFVLRTLLPCSNVSDLTILKANLLTAILKGEPVNVGRLLADDLWVTANCSS 208
Query: 87 PVMIL--PSIITDLCK 100
P + S+I LC+
Sbjct: 209 PSSYINHASLIRKLCE 256
>BQ137238
Length = 1023
Score = 32.7 bits (73), Expect = 0.086
Identities = 17/48 (35%), Positives = 26/48 (53%), Gaps = 3/48 (6%)
Frame = +2
Query: 140 RKKKEPKHPPAPQGP---QPSQMELLMASMQRLETTHGEMREENRAQY 184
+KK P+HPP P +P+Q LL S+QR T H E + + ++
Sbjct: 293 KKKHGPEHPPTPPNTTHLEPTQTPLL--SIQRRHTKHDEYKSQQHREH 430
>TC80014 weakly similar to GP|21536784|gb|AAM61116.1 unknown {Arabidopsis
thaliana}, partial (25%)
Length = 1587
Score = 29.3 bits (64), Expect = 0.95
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Frame = +3
Query: 36 SLLLRNIWPSLHVT------SLPVTKENLLYSILEGHSVDIAAVMSNAIA 79
S+L+ +WPS HVT SL +TK L S+ G + + +VM + IA
Sbjct: 579 SMLVLLLWPSAHVTLGQPSGSLLITKTVCLLSVAYG--ISLCSVMDSFIA 722
>BE240089
Length = 424
Score = 28.9 bits (63), Expect = 1.2
Identities = 19/58 (32%), Positives = 27/58 (45%)
Frame = +3
Query: 116 SEIDAWYVQIFCQEKSKEELLKEIRKKKEPKHPPAPQGPQPSQMELLMASMQRLETTH 173
S I WY +F +E S++EL I + + PP P M S++RLE H
Sbjct: 63 SAISFWYGLMFGRESSRKELSHLIEELRSGNPPPPPHS*TS------MNSLRRLE*LH 218
>TC81146 similar to GP|13543783|gb|AAH06040.1 Unknown (protein for MGC:7642)
{Mus musculus}, partial (77%)
Length = 1023
Score = 28.1 bits (61), Expect = 2.1
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +1
Query: 128 QEKSKEELLKEIRKKKEPKHPPAPQGPQPSQ 158
+E KEE KE KK+E K AP P P Q
Sbjct: 622 EEGKKEEGKKEDGKKEEEKKKEAPPPPDPIQ 714
>TC85909 similar to GP|13277342|emb|CAC34417. Germin-like protein {Pisum
sativum}, partial (95%)
Length = 1551
Score = 28.1 bits (61), Expect = 2.1
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 122 YVQIFCQEKSKEELLKEIRKKKEPKHPPAPQGPQ 155
YV F ++K K++ K+ +KKK+ K+ GPQ
Sbjct: 807 YVLYFLEKKKKKKKKKKKKKKKKKKNLEGGPGPQ 908
>BG582163 similar to GP|14326582|gb| At1g67850/F12A21_2 {Arabidopsis
thaliana}, partial (10%)
Length = 738
Score = 27.3 bits (59), Expect = 3.6
Identities = 25/111 (22%), Positives = 49/111 (43%), Gaps = 6/111 (5%)
Frame = -2
Query: 45 SLHVTSLPVTKENLLYSILEGHSVDIAAVMSNAIADAIQRDAPVMILPSIITDLCKFHNV 104
S+ TS+ ++ + + S + DI I + R + ++ ++ +L V
Sbjct: 566 SMEDTSIEGSRRDEIVSFVVNVGYDIPIKKPKTIPTKVVRTSLILSFGFLLVELRVL--V 393
Query: 105 PILS------GHQEALKSEIDAWYVQIFCQEKSKEELLKEIRKKKEPKHPP 149
PI+S H+ L++ + +++ KSK LLKE + K P + P
Sbjct: 392 PIMSKLF*LYDHKTMLRANLYYLASEMYPPYKSKRCLLKENKA*KSPNNTP 240
>BF636815 weakly similar to GP|21593423|gb unknown {Arabidopsis thaliana},
partial (56%)
Length = 620
Score = 27.3 bits (59), Expect = 3.6
Identities = 12/38 (31%), Positives = 18/38 (46%)
Frame = -1
Query: 127 CQEKSKEELLKEIRKKKEPKHPPAPQGPQPSQMELLMA 164
CQ+ S + + +P PP P P PS LL++
Sbjct: 332 CQKLSSLDQPNHLPHPNQPPPPPPPSPPPPSSSRLLIS 219
>TC91327 similar to GP|22597168|gb|AAN03471.1 unknown protein {Glycine max},
partial (70%)
Length = 738
Score = 27.3 bits (59), Expect = 3.6
Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Frame = +1
Query: 129 EKSKE-ELLKEIRKKKEPKHP---PAPQGPQP 156
EK KE E KE K KEP+ P PAP P+P
Sbjct: 400 EKPKEPEKPKEPEKPKEPEKPKEKPAPPPPEP 495
>TC89727 similar to GP|7453540|gb|AAF62871.1| Solh protein {Mus musculus},
partial (1%)
Length = 1333
Score = 27.3 bits (59), Expect = 3.6
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +2
Query: 140 RKKKEPKHPPAPQGPQPSQMELLMASMQRLETTH 173
R+ + P P P+ P+P+Q+ + +++RLET +
Sbjct: 584 RRGEMPLLAPIPRHPRPTQLGPIRPTVERLETIY 685
>TC81195 similar to GP|15810597|gb|AAL07186.1 unknown protein {Arabidopsis
thaliana}, partial (50%)
Length = 788
Score = 27.3 bits (59), Expect = 3.6
Identities = 11/31 (35%), Positives = 19/31 (60%)
Frame = +3
Query: 128 QEKSKEELLKEIRKKKEPKHPPAPQGPQPSQ 158
+EK E+ LK+ +KKE + PP + +P +
Sbjct: 165 EEKKPEQPLKKEEEKKETEKPPTEEEKKPEE 257
>TC88887 weakly similar to GP|6523547|emb|CAB62280.1 hydroxyproline-rich
glycoprotein DZ-HRGP {Volvox carteri f. nagariensis},
partial (18%)
Length = 1681
Score = 26.9 bits (58), Expect = 4.7
Identities = 11/24 (45%), Positives = 13/24 (53%)
Frame = +2
Query: 145 PKHPPAPQGPQPSQMELLMASMQR 168
P PP P GP P L +A M+R
Sbjct: 1046 PPGPPGPPGPPPKPPRLAVAPMKR 1117
>TC86948 similar to GP|13194796|gb|AAK15560.1 unknown protein {Arabidopsis
thaliana}, partial (78%)
Length = 802
Score = 26.9 bits (58), Expect = 4.7
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +2
Query: 102 HNVPILSGHQEALKSEIDAWYVQIFCQEKSKEELLKEI 139
+N +S E +KS+ + ++ CQ KSK ELLKEI
Sbjct: 68 NNAKTMSLVTEEIKSKSEVYHGDEMCQVKSK-ELLKEI 178
>TC88824 similar to PIR|T47552|T47552 hypothetical protein F8J2.120 -
Arabidopsis thaliana, partial (69%)
Length = 1309
Score = 26.9 bits (58), Expect = 4.7
Identities = 13/32 (40%), Positives = 18/32 (55%)
Frame = +1
Query: 129 EKSKEELLKEIRKKKEPKHPPAPQGPQPSQME 160
EK+ E KEIRK + + P+ P P +ME
Sbjct: 1 EKTN*ERAKEIRK*RRQQQNALPRNPTPPKME 96
>BQ150994 similar to GP|22122173|dbj preproneuropeptide B {Homo sapiens},
partial (15%)
Length = 1036
Score = 26.6 bits (57), Expect = 6.1
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +3
Query: 129 EKSKEELLKEIRKKK--EPKHPPAPQGPQP 156
E+ +E KE R+K+ K P P GP+P
Sbjct: 342 EREREGTKKEARRKRARRKKETPTPDGPRP 431
>TC89698 similar to GP|11967861|emb|CAC19488. putative serine
carboxypeptidase {Pisum sativum}, partial (85%)
Length = 1333
Score = 26.6 bits (57), Expect = 6.1
Identities = 15/61 (24%), Positives = 24/61 (38%)
Frame = +2
Query: 76 NAIADAIQRDAPVMILPSIITDLCKFHNVPILSGHQEALKSEIDAWYVQIFCQEKSKEEL 135
NA+AD + D + L +I +CK N+ + YV + K +E
Sbjct: 905 NAVADEVNEDLAFINLYNIYAPVCKNDNLTAKPKKYSIVNDPCGESYVSAYLNRKDVQEA 1084
Query: 136 L 136
L
Sbjct: 1085L 1087
>BF641536
Length = 645
Score = 26.6 bits (57), Expect = 6.1
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 122 YVQIFCQEKSKEELLKEIRKKKEPK 146
Y +I + K KEE+ KE+ KK+ PK
Sbjct: 301 YKEIDYEGK*KEEITKEVIKKRNPK 227
>TC87220 similar to GP|9758584|dbj|BAB09197.1
gb|AAC80623.1~gene_id:MBD2.15~similar to unknown protein
{Arabidopsis thaliana}, partial (17%)
Length = 2008
Score = 26.2 bits (56), Expect = 8.0
Identities = 17/46 (36%), Positives = 21/46 (44%), Gaps = 4/46 (8%)
Frame = +3
Query: 131 SKEELLKEIRKKKEPKHP----PAPQGPQPSQMELLMASMQRLETT 172
S ++LKE KK P P PQ QPSQ AS Q + +
Sbjct: 861 SLRDILKEQGKKTSSAVPAIPVPTPQKSQPSQANWSSASSQSISAS 998
>TC86867 similar to GP|9294199|dbj|BAB02101.1
gb|AAF04893.1~gene_id:MXC7.13~similar to unknown protein
{Arabidopsis thaliana}, partial (38%)
Length = 1557
Score = 26.2 bits (56), Expect = 8.0
Identities = 37/162 (22%), Positives = 75/162 (45%), Gaps = 9/162 (5%)
Frame = +1
Query: 4 RKAVCVEGLNEEEELTGGIPRRHMTQLSQVWTSLLLRNIWPSLHVTSLPVTKENLLYSIL 63
R+A + EE+ GG R+ + + + + ++ L +N + V P+ +N +S
Sbjct: 502 RRATILTRPTFEEDNKGGHGRKSVNKKNVLSSNTLKQNQLKTPLVPRKPLKPDNKKHSD- 678
Query: 64 EGHSVDIAAVMSNAIADAIQRDAPVMILPSIITD-----LCKFHNVPILSGHQEALKSEI 118
E S +A+ + ++ R A V PS + +F++ L Q+A+++E
Sbjct: 679 EDDSCSVASGTATSVKSFKSR-ATVASAPSFRSTERAQRRKEFYSK--LEEKQQAMEAEK 849
Query: 119 DAWYVQIFCQEKSKEELLKEIRKKKEPKHPPAP----QGPQP 156
+ + ++ KEE +K++R+ + K P P +GP P
Sbjct: 850 NQNEAR---SKEEKEEAIKQLRRSLKFKASPMPSFYHEGPPP 966
>BQ137028 similar to GP|4914334|gb|A F14N23.20 {Arabidopsis thaliana},
partial (7%)
Length = 687
Score = 26.2 bits (56), Expect = 8.0
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 142 KKEPKHPPAPQGPQP 156
K+EP+ PP+P PQP
Sbjct: 421 KEEPQSPPSPPQPQP 465
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.317 0.132 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,187,038
Number of Sequences: 36976
Number of extensions: 89080
Number of successful extensions: 679
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of query: 188
length of database: 9,014,727
effective HSP length: 91
effective length of query: 97
effective length of database: 5,649,911
effective search space: 548041367
effective search space used: 548041367
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Lotus: description of TM0043b.1